【Schedular】

1. 2009-09-09 測試資料。
2. 2009-09-04 15:30 跟陽明視訊開會。
3. 2009-09-11 第一階段軟體安裝。
4. 2009-09-16 系統測試、種子學員∼教學大綱。
5. 2009-XX-XX openPBS torque 教學。

【Environment】

• OS:Ubuntu 8.04.3 LTS

【Software list】

PART 1 : Bioinformatics related Software / Applications

1. AutoFACT
   • 缺資料庫。
2. BLAST
   • 測試完成。已安裝版本：1:2.2.17.20070822-3。
3. SIM4
   • 測試完成。
4. Clustal
   • 測試完成。
5. PipMaker
   • 已安裝。
6. Phylip
   • 測試完成。
7. Eland
   • 未找到安裝資訊。
8. Velvet
   • 測試完成。
9. Bowtie
   • 測試完成。
10. SOAP
    • 測試完成。

PART 2 : Cluster Management related Software

1. OpenPBS : torque - Ubuntu 套件:
2. ​DRBL - 無碟開機系統
3. ​Lustre - 硬碟合併機制
4. Ganglia - 叢集監控系統(CPU/RAM/DISK/排程) - Debian 套件: ​ganglia-monitor, ​gmetad, ​ganglia-webfrontend
5. ​Nagios - 網路狀態監控與事件通報系統(Ex.發簡訊SMS) - Debian 套件: ​nagios3
6. VNC - 遠端桌面 - 需要 ​vnc-java, ​vnc-reflector, some kind of message queue (MQ)
7. LDAP - 統一帳號管理機制
8. Web Server - ​lighttpd 或 ​apache2
9. zterm - Java SSH Client

【Database list】

1. Human dbEST database
2. Human UniGene database
3. Protein interaction database
4. Gene ontology database
5. Homologene database

【Reference】

• ​http://www.bioinformatics.org/
• ​http://biowulf.nih.gov/

【Recent Changes】

Mar 11, 2011

• biocluster (diff)

Jan 12, 2011

• biocluster/Velvet (diff)

Aug 22, 2010

• biocluster/10-05-28 (diff)

May 24, 2010

• biocluster/10-05-24

May 17, 2010

• biocluster/10-05-17 (diff)

Dec 10, 2009

• biocluster/AutoFACT (diff)

Nov 30, 2009

• biocluster/SOAP (diff)
• biocluster/Bowtie (diff)
• biocluster/Clustal (diff)

Nov 18, 2009

• biocluster/wwwblast (diff)

Nov 11, 2009

• biocluster/BLAST (diff)

Sep 16, 2009

• biocluster/教學大綱 (diff)

Sep 15, 2009

• biocluster/Phylip (diff)
• biocluster/SIM4 (diff)

Sep 12, 2009

• biocluster/Eland (diff)

Sep 4, 2009

• biocluster/PipMaker (diff)