SOAP
【說明】
【安裝】
wget http://soap.genomics.org.cn/soap1/soap_1.11.tar.gz tar zxvf soap_1.11.tar.gz
【路徑】
/opt/soap1
【測試】
soap -a soap_test_reads.txt -d reference.fasta -o output.txt -s 10 -r 0
【結果】
- 輸出檔案:output.txt
1379_372_66_F3 TTCTCAGTCAGTCTTCATGGCAGCA hhhhhhhhhhhhhhhhhhhhhhhhh 1 a 25 + scaffold00001 2326 0 1380_574_1082_F3 TCCTCCACCGCACCTCCTCTCTCTC hhhhhhhhhhhhhhhhhhhhhhhhh 1 a 25 + scaffold00001 503 0 1380_770_1324_F3 AAGAGGAGAGAGCCGAGAGACGACT hhhhhhhhhhhhhhhhhhhhhhhhh 1 a 25 - scaffold00001 379 0 1380_1073_552_F3 CACCCAGACTGCGTTCCTTCAACAC hhhhhhhhhhhhhhhhhhhhhhhhh 1 a 25 + scaffold00001 844 0 1380_1389_821_F3 TTTCACATGCACACGTCAACACCCA hhhhhhhhhhhhhhhhhhhhhhhhh 1 a 25 - scaffold00001 4305 2 A->0T40 A->1T40 1380_1879_1685_F3 TCCGAAATATCCTGCGGATCTTATT hhhhhhhhhhhhhhhhhhhhhhhhh 1 a 25 + scaffold00001 2082 1 T->2C40
Load in 1 db seqs, total size 4743 bp. 0 secs passed total_kmers: 1048576 Create seed table. 0 secs passed Single read alignment: Query: soap_test_reads.txt Reference: reference.fasta Output: output.txt 104 reads finished. 0 secs passed Total number of aligned reads: 6 (5.8%) Done. Finished at Tue Sep 15 15:15:19 2009 Total time consumed: 0 secs
Last modified 15 years ago
Last modified on Nov 30, 2009, 2:47:58 PM
Attachments (1)
- soap_test.zip (4.0 KB) - added by wade 15 years ago.
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