【Schedular】

1. 2009-09-09 測試資料。
2. 2009-09-04 13:30 跟陽明視訊開會。
3. 2009-09-11 第一階段軟體安裝。
4. 2009-09-14 系統測試、種子學員。

【Environment】

• OS:Ubuntu 8.04.3 LTS

【Software list】

PART 1 : Bioinformatics related Software / Applications

1. AutoFACT
2. BLAST
3. SIM4
   • 已安裝。
4. Clustal
   • 已安裝。
5. PipMaker
   • 提供 sample 及 結果 供測試。
   • 設定較複雜。
6. Phylip
7. Eland
8. Velvet
   • 提供 sample 及 結果 供測試。
   • doc 建議使用 64 BITS CPU。
9. Bowtie
   • 提供 sample 及 結果 供測試。
   • BINARY FILE。
10. SOAP

Part 2 : Cluster Management related Software

1. OpenPBS : torque
2. ​DRBL - 無碟開機系統
3. ​Lustre - 硬碟合併機制
4. Ganglia - 叢集監控系統(CPU/RAM/DISK/排程)
5. VNC - 遠端桌面 - 需要 ​vnc-java, ​vnc-reflector, some kind of message queue (MQ)
6. LDAP - 統一帳號管理機制
7. Web Server - ​lighttpd 或 ​apache2
8. zterm - Java SSH Client

【Database list】

1. Human dbEST database
2. Human UniGene database
3. Protein interaction database
4. Gene ontology database
5. Homologene database

【Recent Changes】

Mar 11, 2011

• biocluster (diff)

Jan 12, 2011

• biocluster/Velvet (diff)

Aug 22, 2010

• biocluster/10-05-28 (diff)

May 24, 2010

• biocluster/10-05-24

May 17, 2010

• biocluster/10-05-17 (diff)

Dec 10, 2009

• biocluster/AutoFACT (diff)

Nov 30, 2009

• biocluster/SOAP (diff)
• biocluster/Bowtie (diff)
• biocluster/Clustal (diff)

Nov 18, 2009

• biocluster/wwwblast (diff)

Nov 11, 2009

• biocluster/BLAST (diff)

Sep 16, 2009

• biocluster/教學大綱 (diff)

Sep 15, 2009

• biocluster/Phylip (diff)
• biocluster/SIM4 (diff)

Sep 12, 2009

• biocluster/Eland (diff)

Sep 4, 2009

• biocluster/PipMaker (diff)