Changes between Initial Version and Version 1 of jazz/BioCluster_Setup

Timestamp:

Jul 7, 2009, 9:12:36 PM (15 years ago)

Author:

jazz

Comment:

--

jazz/BioCluster_Setup

@@ +1 @@
+= Cluster for Bioinformatics =
+
+[[PageOutline]]
+
+
+{{{
+sudo apt-get -y install gcc g++ make autoconf build-essential
+}}}
+
+== JDK 6 ==
+
+{{{
+sudo apt-get -y install sun-java6-jdk
+}}}
+
+=== GNU R ==
+
+{{{
+sudo apt-get -y install r-base
+sudo apt-get -y install `apt-cache search --names-only "^r-cran" | awk '{ print $1 }' | grep -v "r-cran-rjava" | grep -v "r-cran-rmpi" `
+}}}
+
+== GNU R BioConductor ==
+
+{{{
+if [ ! -e biocLite.R ]; then
+  sudo wget http://www.bioconductor.org/biocLite.R
+fi
+if [ ! -e BioConductor.R ]; then
+  cat > BioConductor.R << EOF
+source(file="$(pwd)/biocLite.R")
+biocLite()
+}}}
+
+== mpiBLAST ==
+
+ * source: http://www.mpiblast.org/
+{{{
+sudo apt-get install libncbi6-dev libncbi6
+}}}