Cluster for Bioinformatics

sudo apt-get -y install gcc g++ make autoconf build-essential

JDK 6

sudo apt-get -y install sun-java6-jdk

GNU R ==

sudo apt-get -y install r-base
sudo apt-get -y install `apt-cache search --names-only "^r-cran" | awk '{ print $1 }' | grep -v "r-cran-rjava" | grep -v "r-cran-rmpi" `

GNU R BioConductor?

if [ ! -e biocLite.R ]; then
  sudo wget http://www.bioconductor.org/biocLite.R
fi
if [ ! -e BioConductor.R ]; then
  cat > BioConductor.R << EOF
source(file="$(pwd)/biocLite.R")
biocLite()

mpiBLAST

• source: ​http://www.mpiblast.org/

  sudo apt-get install libncbi6-dev libncbi6