wiki:jazz/BioCluster_Setup

Version 1 (modified by jazz, 15 years ago) (diff)

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Cluster for Bioinformatics

sudo apt-get -y install gcc g++ make autoconf build-essential

JDK 6

sudo apt-get -y install sun-java6-jdk

GNU R ==

sudo apt-get -y install r-base
sudo apt-get -y install `apt-cache search --names-only "^r-cran" | awk '{ print $1 }' | grep -v "r-cran-rjava" | grep -v "r-cran-rmpi" `

GNU R BioConductor?

if [ ! -e biocLite.R ]; then
  sudo wget http://www.bioconductor.org/biocLite.R
fi
if [ ! -e BioConductor.R ]; then
  cat > BioConductor.R << EOF
source(file="$(pwd)/biocLite.R")
biocLite()

mpiBLAST

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