wiki:jazz/BioCluster_Setup

Cluster for Bioinformatics

sudo apt-get -y install gcc g++ make autoconf build-essential

JDK 6

sudo apt-get -y install sun-java6-jdk

GNU R

sudo apt-get -y install r-base
sudo apt-get -y install `apt-cache search --names-only "^r-cran" | awk '{ print $1 }' | grep -v "r-cran-rjava" | grep -v "r-cran-rmpi" `

GNU R BioConductor

if [ ! -e biocLite.R ]; then
  sudo wget http://www.bioconductor.org/biocLite.R
fi
if [ ! -e BioConductor.R ]; then
  cat > BioConductor.R << EOF
source(file="$(pwd)/biocLite.R")
biocLite()

mpiBLAST

Last modified 15 years ago Last modified on Jul 7, 2009, 9:12:55 PM

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