Cluster for Bioinformatics
sudo apt-get -y install gcc g++ make autoconf build-essential
JDK 6
sudo apt-get -y install sun-java6-jdk
GNU R
sudo apt-get -y install r-base sudo apt-get -y install `apt-cache search --names-only "^r-cran" | awk '{ print $1 }' | grep -v "r-cran-rjava" | grep -v "r-cran-rmpi" `
GNU R BioConductor
if [ ! -e biocLite.R ]; then sudo wget http://www.bioconductor.org/biocLite.R fi if [ ! -e BioConductor.R ]; then cat > BioConductor.R << EOF source(file="$(pwd)/biocLite.R") biocLite()
mpiBLAST
- source: http://www.mpiblast.org/
sudo apt-get install libncbi6-dev libncbi6
Last modified 15 years ago
Last modified on Jul 7, 2009, 9:12:55 PM
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- BioCluster_Setup.sh (5.1 KB) - added by jazz 15 years ago.
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