SOAP

• 軟體來源：​http://soap.genomics.org.cn/soap1/

【說明】

【安裝】

   wget http://soap.genomics.org.cn/soap1/soap_1.11.tar.gz
   tar zxvf sim4.tar.gz

【路徑】

   /opt/soap1

【測試】

   soap -a soap_test_reads.txt -d reference.fasta -o output.txt -s 10 -r 0

【結果】

• output.txt

   Load in 1 db seqs, total size 4743 bp. 0 secs passed
   total_kmers: 1048576
   Create seed table. 0 secs passed
   Single read alignment:
   Query: soap_test_reads.txt  Reference: reference.fasta  Output: output.txt
   104 reads finished. 0 secs passed
   Total number of aligned reads: 6 (5.8%)
   Done.
   Finished at Tue Sep 15 15:15:19 2009
   Total time consumed:  0 secs