• Install R/BioConductor :

  root@client-01:~# apt-get install make gcc g++ gfortran libc6-dev zlib1g-dev libgfortran1-dev
  root@client-01:~# apt-get install build-essential g77
  root@client-01:~# apt-get install refblas3 refblas3-dev
  root@client-01:~# apt-get install r-base-core r-base-dev r-bioc-repostools r-recommended
  

• Then switch into R command line mode after you finish the installation of R above

  > source("http://www.bioconductor.org/biocLite.R")
  > biocLite()
  

• affy affydata affyPLM annaffy annotate Biobase Biostrings Dyndoc gcrma
  genefilter geneplotter hgu95av2 limma marray matchprobes multtest ROC vsn xtable affyQCReport
  will be installed by default.

• If you just need to install some specified packages, you could issue the commands in R command line like this:

  > biocLite(c("pkg1", "pkg2"))