* Install R/BioConductor : {{{ root@client-01:~# apt-get install make gcc g++ gfortran libc6-dev zlib1g-dev libgfortran1-dev root@client-01:~# apt-get install build-essential g77 root@client-01:~# apt-get install refblas3 refblas3-dev root@client-01:~# apt-get install r-base-core r-base-dev r-bioc-repostools r-recommended }}} * Then switch into R command line mode after you finish the installation of R above {{{ > source("http://www.bioconductor.org/biocLite.R") > biocLite() }}} * affy affydata affyPLM annaffy annotate Biobase Biostrings Dyndoc gcrma [[BR]] genefilter geneplotter hgu95av2 limma marray matchprobes multtest ROC vsn xtable affyQCReport[[BR]] will be installed by default. * If you just need to install some specified packages, you could issue the commands in R command line like this: {{{ > biocLite(c("pkg1", "pkg2")) }}}