Changes between Version 7 and Version 8 of biocluster/Phylip

Timestamp:

Sep 15, 2009, 4:47:52 PM (15 years ago)

Author:

wade

Comment:

--

biocluster/Phylip

@@ -16 +16 @@
 }}}
 
-= 【測試】 =
- 1. 複製 HCV.phy  並將其重新命名為 infile。
+= 【測試一】 =
+ 1. 指令：
    {{{
 cp HCV.phy infile
+seqboot
    }}}
- 1. 畫面：
+   畫面：
    {{{
 Bootstrapping algorithm, version 3.69
@@ -41 +42 @@
   Y to accept these or type the letter for one to change
    }}}
-   輸入
+ 1. 指令：
    {{{
 y 
    }}}
- 1. 畫面：
+   畫面：
    {{{
 Random number seed (must be odd)?   
    }}}
-   輸入
+ 1. 指令
    {{{
 5
    }}}
- 1. 畫面：
+   畫面：
    {{{
 completed replicate number   10
@@ -71 +72 @@
    }}}
    輸出：outfile
+
+= 【測試二】 =
+ 1. 指令：
+    {{{
+mv outfile infile
+dnapars
+    }}}
+    畫面：
+    {{{
+DNA parsimony algorithm, version 3.69
+
+Setting for this run:
+  U                 Search for best tree?  Yes
+  S                        Search option?  More thorough search
+  V              Number of trees to save?  10000
+  J   Randomize input order of sequences?  No. Use input order
+  O                        Outgroup root?  No, use as outgroup species  1
+  T              Use Threshold parsimony?  No, use ordinary parsimony
+  N           Use Transversion parsimony?  No, count all steps
+  W                       Sites weighted?  No
+  M           Analyze multiple data sets?  No
+  I          Input sequences interleaved?  Yes
+  0   Terminal type (IBM PC, ANSI, none)?  ANSI
+  1    Print out the data at start of run  No
+  2  Print indications of progress of run  Yes
+  3                        Print out tree  Yes
+  4          Print out steps in each site  No
+  5  Print sequences at all nodes of tree  No
+  6       Write out trees onto tree file?  Yes
+
+  Y to accept these or type the letter for one to change
+    }}}
+ 1. 指令：
+    {{{
+Y
+    }}}
+    畫面：