​http://www.clustal.org/

以 ClustalW 為主。

【安裝】

   wget http://www.clustal.org/download/current/clustalw-2.0.11-linux-i386-libcppstatic.tar.gz
   tar zxvf clustalw-2.0.11-linux-i386-libcppstatic.tar.gz

【測試】

1. 指令：

   clustalw2
   

   畫面：

    **************************************************************
    ******** CLUSTAL 2.0.11 Multiple Sequence Alignments  ********
    **************************************************************
   
   
        1. Sequence Input From Disc
        2. Multiple Alignments
        3. Profile / Structure Alignments
        4. Phylogenetic trees
   
        S. Execute a system command
        H. HELP
        X. EXIT (leave program)
   
   
   Your choice: 
   
   

2. 指令

   1
   

   畫面

   Sequences should all be in 1 file.
   
   7 formats accepted: 
   NBRF/PIR, EMBL/SwissProt, Pearson (Fasta), GDE, Clustal, GCG/MSF,                  RSF.
   
   
   Enter the name of the sequence file :