50 | | |
51 | | }}} |
| 49 | }}} |
| 50 | 1. 指令 |
| 51 | {{{ |
| 52 | kinase.tfa |
| 53 | }}} |
| 54 | 畫面 |
| 55 | {{{ |
| 56 | Sequence format is Pearson |
| 57 | Sequences assumed to be PROTEIN |
| 58 | |
| 59 | |
| 60 | Sequence 1: KAPA_MOUSE 350 aa |
| 61 | Sequence 2: KDCA_DROME 354 aa |
| 62 | Sequence 3: ARK1_HUMAN 689 aa |
| 63 | Sequence 4: KGP2_DROME 1088 aa |
| 64 | Sequence 5: YPK2_YEAST 677 aa |
| 65 | Sequence 6: VIP_MELGA 444 aa |
| 66 | Sequence 7: K6A3_HUMAN 740 aa |
| 67 | Sequence 8: DMK_HUMAN 639 aa |
| 68 | Sequence 9: KPBG_RABIT 386 aa |
| 69 | Sequence 10: KCC1_YEAST 446 aa |
| 70 | Sequence 11: PIM1_HUMAN 313 aa |
| 71 | Sequence 12: KRAF_DROME 781 aa |
| 72 | Sequence 13: TRKB_HUMAN 822 aa |
| 73 | Sequence 14: INSR_HUMAN 1382 aa |
| 74 | Sequence 15: KPRO_MAIZE 817 aa |
| 75 | Sequence 16: DAF1_CAEEL 669 aa |
| 76 | |
| 77 | |
| 78 | |
| 79 | ************************************************************** |
| 80 | ******** CLUSTAL 2.0.11 Multiple Sequence Alignments ******** |
| 81 | ************************************************************** |
| 82 | |
| 83 | |
| 84 | 1. Sequence Input From Disc |
| 85 | 2. Multiple Alignments |
| 86 | 3. Profile / Structure Alignments |
| 87 | 4. Phylogenetic trees |
| 88 | |
| 89 | S. Execute a system command |
| 90 | H. HELP |
| 91 | X. EXIT (leave program) |
| 92 | |
| 93 | |
| 94 | Your choice: |
| 95 | }}} |
| 96 | 1. 指令 |
| 97 | {{{ |
| 98 | 2 |
| 99 | }}} |
| 100 | 畫面 |
| 101 | {{{ |
| 102 | |
| 103 | ****** MULTIPLE ALIGNMENT MENU ****** |
| 104 | |
| 105 | |
| 106 | 1. Do complete multiple alignment now Slow/Accurate |
| 107 | 2. Produce guide tree file only |
| 108 | 3. Do alignment using old guide tree file |
| 109 | |
| 110 | 4. Toggle Slow/Fast pairwise alignments = SLOW |
| 111 | |
| 112 | 5. Pairwise alignment parameters |
| 113 | 6. Multiple alignment parameters |
| 114 | |
| 115 | 7. Reset gaps before alignment? = OFF |
| 116 | 8. Toggle screen display = ON |
| 117 | 9. Output format options |
| 118 | I. Iteration = NONE |
| 119 | |
| 120 | S. Execute a system command |
| 121 | H. HELP |
| 122 | or press [RETURN] to go back to main menu |
| 123 | |
| 124 | |
| 125 | Your choice: |
| 126 | }}} |
| 127 | 1. 指令 |
| 128 | {{{ |
| 129 | 1 |
| 130 | }}} |
| 131 | 畫面 |
| 132 | {{{ |
| 133 | Enter a name for the CLUSTAL output file [kinase.aln]: |
| 134 | }}} |
| 135 | 1. 指令 |
| 136 | {{{ |
| 137 | 按 Enter |
| 138 | }}} |
| 139 | 畫面 |
| 140 | {{{ |
| 141 | Start of Pairwise alignments |
| 142 | Aligning... |
| 143 | |
| 144 | Sequences (1:2) Aligned. Score: 45 |
| 145 | Sequences (1:3) Aligned. Score: 26 |
| 146 | Sequences (1:4) Aligned. Score: 36 |
| 147 | ............ |
| 148 | Sequences (14:16) Aligned. Score: 11 |
| 149 | Sequences (15:16) Aligned. Score: 11 |
| 150 | Enter name for new GUIDE TREE file [kinase.dnd]: |
| 151 | }}} |
| 152 | 1. 指令 |
| 153 | {{{ |
| 154 | 按 Enter |
| 155 | }}} |
| 156 | 畫面 |
| 157 | {{{ |
| 158 | |
| 159 | There are 15 groups |
| 160 | Start of Multiple Alignment |
| 161 | |
| 162 | Aligning... |
| 163 | Group 1: Delayed |
| 164 | Group 2: Sequences: 2 Score:5585 |
| 165 | Group 3: Sequences: 2 Score:6757 |
| 166 | Group 4: Sequences: 4 Score:4840 |
| 167 | Group 5: Sequences: 5 Score:4243 |
| 168 | Group 6: Delayed |
| 169 | Group 7: Delayed |
| 170 | Group 8: Delayed |
| 171 | Group 9: Delayed |
| 172 | Group 10: Delayed |
| 173 | Group 11: Delayed |
| 174 | Group 12: Delayed |
| 175 | Group 13: Delayed |
| 176 | Group 14: Delayed |
| 177 | Group 15: Delayed |
| 178 | Alignment Score -1627 |
| 179 | |
| 180 | |
| 181 | |
| 182 | Consensus length = 1608 |
| 183 | |
| 184 | CLUSTAL-Alignment file created [kinase.aln] |
| 185 | |
| 186 | |
| 187 | CLUSTAL 2.0.11 multiple sequence alignment |
| 188 | |
| 189 | |
| 190 | KAPA_MOUSE ------------------------------------------------------------ |
| 191 | KDCA_DROME ------------------------------------------------------------ |
| 192 | YPK2_YEAST ------------------------------------------------------------ |
| 193 | VIP_MELGA ------------------------------------------------------------ |
| 194 | K6A3_HUMAN ------------------------------------------------------------ |
| 195 | PIM1_HUMAN ------------------------------------------------------------ |
| 196 | KGP2_DROME MRFCFDRLCFATKRPAQNSNSNAPHSSTTVDAPPRPADVDVATVPVATTAPPPQQPVSNL |
| 197 | DMK_HUMAN ------------------------------------------------------------ |
| 198 | KPBG_RABIT ------------------------------------------------------------ |
| 199 | KCC1_YEAST ------------------------------------------------------------ |
| 200 | ARK1_HUMAN ------------------------------------------------------------ |
| 201 | INSR_HUMAN ------------------------MGTGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCP |
| 202 | TRKB_HUMAN ------------------------------------------------------------ |
| 203 | KPRO_MAIZE ------------------------------------------------------------ |
| 204 | KRAF_DROME ------------------------------------------------------------ |
| 205 | DAF1_CAEEL ------------------------------------------------------------ |
| 206 | |
| 207 | |
| 208 | KAPA_MOUSE ------------------------------------------------------------ |
| 209 | |
| 210 | Press [RETURN] to continue or X to stop: |
| 211 | }}} |
| 212 | 1. 指令 |
| 213 | {{{ |
| 214 | x |
| 215 | }}} |
| 216 | 畫面 |
| 217 | {{{ |
| 218 | ****** MULTIPLE ALIGNMENT MENU ****** |
| 219 | |
| 220 | |
| 221 | 1. Do complete multiple alignment now Slow/Accurate |
| 222 | 2. Produce guide tree file only |
| 223 | 3. Do alignment using old guide tree file |
| 224 | |
| 225 | 4. Toggle Slow/Fast pairwise alignments = SLOW |
| 226 | |
| 227 | 5. Pairwise alignment parameters |
| 228 | 6. Multiple alignment parameters |
| 229 | |
| 230 | 7. Reset gaps before alignment? = OFF |
| 231 | 8. Toggle screen display = ON |
| 232 | 9. Output format options |
| 233 | I. Iteration = NONE |
| 234 | |
| 235 | S. Execute a system command |
| 236 | H. HELP |
| 237 | or press [RETURN] to go back to main menu |
| 238 | |
| 239 | |
| 240 | Your choice: |
| 241 | }}} |
| 242 | 1. 指令 |
| 243 | {{{ |
| 244 | 按 Enter |
| 245 | }}} |
| 246 | 畫面 |
| 247 | {{{ |
| 248 | ************************************************************** |
| 249 | ******** CLUSTAL 2.0.11 Multiple Sequence Alignments ******** |
| 250 | ************************************************************** |
| 251 | |
| 252 | |
| 253 | 1. Sequence Input From Disc |
| 254 | 2. Multiple Alignments |
| 255 | 3. Profile / Structure Alignments |
| 256 | 4. Phylogenetic trees |
| 257 | |
| 258 | S. Execute a system command |
| 259 | H. HELP |
| 260 | X. EXIT (leave program) |
| 261 | |
| 262 | |
| 263 | Your choice: |
| 264 | }}} |
| 265 | 1. 指令: |
| 266 | {{{ |
| 267 | x |
| 268 | }}} |
| 269 | 輸出檔案: kinase.aln 、 kinase.dnd 。 |