Changes between Initial Version and Version 1 of R-MPI_Problem

Timestamp:

Apr 1, 2008, 3:30:55 PM (18 years ago)

Author:

rock

Comment:

--

R-MPI_Problem

@@ +1 @@
+ * run in kerrighed, meet out of memory error message
+   * Enable Kerrighed USE_REMOTE_MEMORY
+{{{
+$ R
+# justRMA original limit: 145 CELs
+setwd("/home/mnt/chris_rmpi/cel_data_mixed")
+rm(list=ls())
+dir()
+library(affy)
+CELNames<-dir(".", "[.]CEL")
+CELNames<-CELNames[1:305]
+data <- justRMA(filenames=CELNames)
+
+$ dmesg
+
+}}}
+
+   * Don't enable Kerrighed USE_REMOTE_MEMORY
+{{{
+$ dmesg
+Out of memory: kill process 37159 (avahi-daemon) score 630 or a child
+Killed process 37159 (avahi-daemon)
+518032 pages of RAM
+288656 pages of HIGHMEM
+5714 reserved pages
+92 pages shared
+0 pages swap cached
+0 pages dirty
+0 pages writeback
+0 pages mapped
+5771 pages slab
+592 pages pagetables
+}}}