• run in kerrighed, meet out of memory error message
  • Enable Kerrighed USE_REMOTE_MEMORY

    $ R
    # justRMA original limit: 145 CELs
    setwd("/home/mnt/chris_rmpi/cel_data_mixed")
    rm(list=ls())
    dir()
    library(affy)
    CELNames<-dir(".", "[.]CEL")
    CELNames<-CELNames[1:305]
    data <- justRMA(filenames=CELNames)
    
    $ dmesg
    
    

• Don't enable Kerrighed USE_REMOTE_MEMORY

  $ dmesg
  Out of memory: kill process 37159 (avahi-daemon) score 630 or a child
  Killed process 37159 (avahi-daemon)
  518032 pages of RAM
  288656 pages of HIGHMEM
  5714 reserved pages
  92 pages shared
  0 pages swap cached
  0 pages dirty
  0 pages writeback
  0 pages mapped
  5771 pages slab
  592 pages pagetables