| | 1 | * Install R/BioConductor : |
| | 2 | {{{ |
| | 3 | root@client-01:~# apt-get install build-essential g77 |
| | 4 | root@client-01:~# apt-get install refblas3 refblas3-dev |
| | 5 | root@client-01:~# apt-get install r-base-core r-base-dev r-bioc-repostools r-recommended |
| | 6 | }}} |
| | 7 | |
| | 8 | * Then switch into R command line mode after you finish the installation of R above |
| | 9 | {{{ |
| | 10 | > source("http://www.bioconductor.org/biocLite.R") |
| | 11 | > biocLite() |
| | 12 | }}} |
| | 13 | |
| | 14 | * affy affydata affyPLM annaffy annotate Biobase Biostrings Dyndoc gcrma [[BR]] |
| | 15 | genefilter geneplotter hgu95av2 limma marray matchprobes multtest ROC vsn xtable affyQCReport[[BR]] |
| | 16 | will be installed by default. |
| | 17 | |
| | 18 | * If you just need to install some specified packages, you could issue the commands in R command line like this: |
| | 19 | {{{ |
| | 20 | > biocLite(c("pkg1", "pkg2")) |
| | 21 | }}} |
