Changes between Version 1 and Version 2 of YMU110509/Lab10

Timestamp:

Jun 20, 2011, 1:33:09 PM (13 years ago)

Author:

jazz

Comment:

--

YMU110509/Lab10

@@ -11 +11 @@
 
 {{{
-jazz@hadoop:~$ wget http://nchc.dl.sourceforge.net/project/cloudburst-bio/cloudburst/CloudBurst-1.1.0/CloudBurst-1.1.0.tgz
-jazz@hadoop:~$ tar zxvf CloudBurst-1.1.0.tgz
-jazz@hadoop:~$ cd CloudBurst-1.1.0
-jazz@hadoop:~/CloudBurst-1.1.0$ wget "http://nchc.dl.sourceforge.net/project/cloudburst-bio/cloudburst-data/CloudBurst-sample-data/CloudBurst-small-sample.tgz"
-jazz@hadoop:~/CloudBurst-1.1.0$ tar zxvf CloudBurst-small-sample.tgz
-jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -mkdir cloudburst
-jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -put CloudBurst-small-sample/100k.br cloudburst/
-jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -put CloudBurst-small-sample/s_suis.br cloudburst/
-jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -lsr
-drwxr-xr-x   - jazz supergroup          0 2010-04-30 10:55 /user/jazz/cloudburst
--rw-r--r--   2 jazz supergroup    4493593 2010-04-30 10:55 /user/jazz/cloudburst/100k.br
--rw-r--r--   2 jazz supergroup     579773 2010-04-30 10:55 /user/jazz/cloudburst/s_suis.br
-jazz@hadoop:~/CloudBurst-1.1.0$ hadoop jar CloudBurst.jar /user/$(whoami)/cloudburst/s_suis.br /user/$(whoami)/cloudburst/100k.br results 36 3 0 1 240 48 24 24 128 16 2 >& cloudburst.err
-jazz@hadoop:~/CloudBurst-1.0$ tail -n 1 cloudburst.err
-Total Running time:  102.68
-jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -get results .
-jazz@hadoop:~/CloudBurst-1.1.0$ java -jar PrintAlignments.jar results | sort -nk4 > 100k.3.txt
+~$ wget http://nchc.dl.sourceforge.net/project/cloudburst-bio/cloudburst/CloudBurst-1.1.0/CloudBurst-1.1.0.tgz
+~$ tar zxvf CloudBurst-1.1.0.tgz
+~$ cd CloudBurst-1.1.0
+~/CloudBurst-1.1.0$ wget "http://nchc.dl.sourceforge.net/project/cloudburst-bio/cloudburst-data/CloudBurst-sample-data/CloudBurst-small-sample.tgz"
+~/CloudBurst-1.1.0$ tar zxvf CloudBurst-small-sample.tgz
+~/CloudBurst-1.1.0$ hadoop fs -mkdir cloudburst
+~/CloudBurst-1.1.0$ hadoop fs -put CloudBurst-small-sample/100k.br cloudburst/ 
+~/CloudBurst-1.1.0$ hadoop fs -put CloudBurst-small-sample/s_suis.br cloudburst/ 
+~/CloudBurst-1.1.0$ hadoop fs -lsr
+ - jazz supergroup          0 2010-04-30 10:55 /user/jazz/cloudburst
+ 2 jazz supergroup    4493593 2010-04-30 10:55 /user/jazz/cloudburst/100k.br
+ 2 jazz supergroup     579773 2010-04-30 10:55 /user/jazz/cloudburst/s_suis.br
+~/CloudBurst-1.0.1$ hadoop jar CloudBurst.jar /user/$(whoami)/cloudburst/s_suis.br /user/$(whoami)/cloudburst/100k.br results 36 3 0 1 240 48 24 24 128 16 2 >& cloudburst.err
+~/CloudBurst-1.0.1$ tail -n 1 cloudburst.err
+g time:  102.68
+~/CloudBurst-1.0.1$ hadoop fs -get results .
+~/CloudBurst-1.0.1$ java -jar PrintAlignments.jar results | sort -nk4 > 100k.3.txt
 Printing results
 }}}