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實作十 Lab10

~$ wget http://nchc.dl.sourceforge.net/project/cloudburst-bio/cloudburst/CloudBurst-1.1.0/CloudBurst-1.1.0.tgz
~$ tar zxvf CloudBurst-1.1.0.tgz
~$ cd CloudBurst-1.1.0
~/CloudBurst-1.1.0$ wget "http://nchc.dl.sourceforge.net/project/cloudburst-bio/cloudburst-data/CloudBurst-sample-data/CloudBurst-small-sample.tgz"
~/CloudBurst-1.1.0$ tar zxvf CloudBurst-small-sample.tgz
~/CloudBurst-1.1.0$ hadoop fs -mkdir cloudburst
~/CloudBurst-1.1.0$ hadoop fs -put CloudBurst-small-sample/100k.br cloudburst/ 
~/CloudBurst-1.1.0$ hadoop fs -put CloudBurst-small-sample/s_suis.br cloudburst/ 
~/CloudBurst-1.1.0$ hadoop fs -lsr
 - jazz supergroup          0 2010-04-30 10:55 /user/jazz/cloudburst
 2 jazz supergroup    4493593 2010-04-30 10:55 /user/jazz/cloudburst/100k.br
 2 jazz supergroup     579773 2010-04-30 10:55 /user/jazz/cloudburst/s_suis.br
~/CloudBurst-1.0.1$ hadoop jar CloudBurst.jar /user/$(whoami)/cloudburst/s_suis.br /user/$(whoami)/cloudburst/100k.br results 36 3 0 1 240 48 24 24 128 16 2 >& cloudburst.err
~/CloudBurst-1.0.1$ tail -n 1 cloudburst.err
g time:  102.68
~/CloudBurst-1.0.1$ hadoop fs -get results .
~/CloudBurst-1.0.1$ java -jar PrintAlignments.jar results | sort -nk4 > 100k.3.txt
Printing results