Changes between Initial Version and Version 1 of YMU110509/Lab10

Timestamp:

Jun 20, 2011, 12:18:47 PM (13 years ago)

Author:

jazz

Comment:

--

YMU110509/Lab10

@@ +1 @@
+[[PageOutline]]
+
+◢ <[wiki:YMU110509/Lab9 實作九]> | <[wiki:YMU110509 回課程大綱]> ▲ | ◣
+
+= 實作十 Lab10 =
+
+{{{
+#!html
+<div style="text-align: center;"><big style="font-weight: bold;"><big><br/></big></big></div>
+}}}
+
+{{{
+jazz@hadoop:~$ wget http://nchc.dl.sourceforge.net/project/cloudburst-bio/cloudburst/CloudBurst-1.1.0/CloudBurst-1.1.0.tgz
+jazz@hadoop:~$ tar zxvf CloudBurst-1.1.0.tgz
+jazz@hadoop:~$ cd CloudBurst-1.1.0
+jazz@hadoop:~/CloudBurst-1.1.0$ wget "http://nchc.dl.sourceforge.net/project/cloudburst-bio/cloudburst-data/CloudBurst-sample-data/CloudBurst-small-sample.tgz"
+jazz@hadoop:~/CloudBurst-1.1.0$ tar zxvf CloudBurst-small-sample.tgz
+jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -mkdir cloudburst
+jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -put CloudBurst-small-sample/100k.br cloudburst/
+jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -put CloudBurst-small-sample/s_suis.br cloudburst/
+jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -lsr
+drwxr-xr-x   - jazz supergroup          0 2010-04-30 10:55 /user/jazz/cloudburst
+-rw-r--r--   2 jazz supergroup    4493593 2010-04-30 10:55 /user/jazz/cloudburst/100k.br
+-rw-r--r--   2 jazz supergroup     579773 2010-04-30 10:55 /user/jazz/cloudburst/s_suis.br
+jazz@hadoop:~/CloudBurst-1.1.0$ hadoop jar CloudBurst.jar /user/$(whoami)/cloudburst/s_suis.br /user/$(whoami)/cloudburst/100k.br results 36 3 0 1 240 48 24 24 128 16 2 >& cloudburst.err
+jazz@hadoop:~/CloudBurst-1.0$ tail -n 1 cloudburst.err
+Total Running time:  102.68
+jazz@hadoop:~/CloudBurst-1.1.0$ hadoop fs -get results .
+jazz@hadoop:~/CloudBurst-1.1.0$ java -jar PrintAlignments.jar results | sort -nk4 > 100k.3.txt
+Printing results
+}}}