Changes between Version 2 and Version 3 of jazz/velvet


Ignore:
Timestamp:
May 13, 2011, 11:06:45 PM (13 years ago)
Author:
jazz
Comment:

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  • jazz/velvet

    v2 v3  
    164164 * 範例：ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data/NA19240/sequence_read/
    165165 * <參考> [http://www.ncbi.nlm.nih.gov/books/NBK47540/#SRA_Download_Guid_B.3_Installing_the_Too 5 Converting SRA format data into FASTQ]
    166  * <下載> [http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software NCBI SRA SDK （Software Development Kit）]
     166 * <下載> [http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software NCBI SRA SDK （Software Development Kit）] - 2011-04-29, version 2.0.1 release
     167 * <編譯>
     168{{{
     169~$ sudo apt-get install build-essential libxml2-dev libbz2-dev zlib1g-dev
     170~$ wget http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sra_sdk-2.0.1.tar.gz
     171~$ tar zxvf sra_sdk-2.0.1.tar.gz
     172~$ cd sra_sdk-2.0.1
     173~/sra_sdk-2.0.1$ make ; cd ..
     174~$ wget ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByExp/sra/SRX/SRX036/SRX036906/SRR089345/SRR089345.sra
     175}}}