wiki:jazz/mpich2_deb

Version 7 (modified by jazz, 16 years ago) (diff)

--

Rebuild mpich2 Debain package

There are ​Debian package provided by Zach Lowry for MPICH2 version 1.0.3. We want to build 1.0.7 package with 1.0.3 package rules. Here is the procedures:

Extract 1.0.3 debian package rules

  • Donwload 1.0.3 debian package source files 
    root@r-mpi:~# wget http://www.cs.mtsu.edu/~zach/debian/current/mpich2_1.0.3-2.dsc
root@r-mpi:~# wget http://www.cs.mtsu.edu/~zach/debian/current/mpich2_1.0.3-2.diff.gz
root@r-mpi:~# wget http://www.cs.mtsu.edu/~zach/debian/current/mpich2_1.0.3.orig.tar.gz
  • We will need dpkg-source command, so first check if you had installed dpkg-dev 
    root@r-mpi:~# apt-get install dpkg-dev
  • Extract 1.0.3 debian package source 
    root@r-mpi:~# dpkg-source -x mpich2_1.0.3-2.dsc
gpg: Signature made Mon 28 Nov 2005 07:49:49 PM PST using DSA key ID 1CE6894E
gpg: Can't check signature: public key not found
dpkg-source: extracting mpich2 in mpich2-1.0.3
dpkg-source: unpacking mpich2_1.0.3.orig.tar.gz
dpkg-source: applying ./mpich2_1.0.3-2.diff.gz

Configure 1.0.7 source tar ball

  • Download 1.0.7 source tar ball from office website 
    root@r-mpi:~# wget http://www.mcs.anl.gov/research/projects/mpich2/downloads/tarballs/mpich2-1.0.7.tar.gz
root@r-mpi:~# tar zxvf mpich2-1.0.7.tar.gz
  • Copy debian folder from 1.0.3 
    root@r-mpi:~# cd mpich2-1.0.7
root@r-mpi:~/mpich2-1.0.7# cp -aRp ../mpich2-1.0.3/debian/ .
  • We will need dch command, so first check if you had installed devscripts 
    root@r-mpi:~/mpich2-1.0.7# apt-get install devscripts
  • modified debian/control 
    root@r-mpi:~/mpich2-1.0.7# vi debian/control

    • debian/control

      old new  
      2424Architecture: any
      2525Section: devel
      2626Priority: extra
      27 Depends: ${shlibs:Depends}, python2.3, python2.3-xml
       27Depends: ${shlibs:Depends}, python, python-xml
      2828Conflicts: mpd
      2929Recommends: mpich2-doc (= ${Source-Version}), ssh
      3030Description: Process control for MPICH2
  • update debian/changelog 
    root@r-mpi:~/mpich2-1.0.7# export DEBFULLNAME="Jazz Yao-Tsung Wang"
root@r-mpi:~/mpich2-1.0.7# export DEBEMAIL="XXX@NCHC.ORG.TW"
root@r-mpi:~/mpich2-1.0.7# dch -i

    • debian/changelog

      old new  
      11
      2 mpich2 (1.0.3-3) unstable; urgency=low
       2mpich2 (1.0.7-1) unstable; urgency=low
       3
       4  * New upstream release
       5
       6 -- Jazz Yao-Tsung Wang <XXX@NCHC.ORG.TW>  Thu, 12 Jun 2008 13:11:50 -0700
      37
      48mpich2 (1.0.3-2) unstable; urgency=low
  • remove old patches 
    root@r-mpi:~/mpich2-1.0.7# rm -rf debian/patches/
  • use dpkg-checkbuilddeps to know which packages is not yet installed for building new packages. 
    root@r-mpi:~/mpich2-1.0.7# dpkg-checkbuilddeps
  • If there are errors after dpkg-checkbuilddeps, you can install packages which is needed for build mpich2 packages 
    root@r-mpi:~/mpich2-1.0.7# apt-get install gcc g++ debhelper cdbs libg2c0 linux-kernel-headers python g77 txt2man libxt6 libxt-dev x-dev
  • use cdbs-edit-patches to create new patches 
    root@r-mpi:~/mpich2-1.0.7# cdbs-edit-patch 01_Makefile.in
  • cdbs-edit-patches will create a temperate folder for you to edit patches. You will need to patch following files.
    • Makefile.in 
      root@r-mpi:/tmp/cdbs-new-patch.aj3114/mpich2-1.0.7.new# vi Makefile.in

      • Makefile.in

        old new  
        185185       if [ ! -d ${DESTDIR}${exec_prefix} ] ; then $(MKDIR_P) ${DESTDIR}${exec_prefix} ; fi
        186186       if [ ! -d ${DESTDIR}${libdir} ] ; then $(MKDIR_P) ${DESTDIR}${libdir} ; fi
        187187       ${MAKE} install-local
         188       ${MAKE} install-examples
        188189       $(INSTALL_DATA) src/include/mpi.h ${DESTDIR}${includedir}/mpi.h
        189190       $(INSTALL_DATA) lib/lib${MPILIBNAME}.a ${DESTDIR}${libdir}/lib${MPILIBNAME}.a
        190191       if [ ! -d ${DESTDIR}${docdir} ] ; then $(MKDIR_P) ${DESTDIR}${docdir} ; fi
        … …  
        479480# documentation)
        480481install-examples:
        481482       if [ ! -d ${DESTDIR}${exec_prefix}/examples ] ; then \
        482            $(MKDIR_P) ${DESTDIR}${exec_prefix}/examples ; \
         483           $(MKDIR_P) ${DESTDIR}${exec_prefix}/share/mpich2/examples ; \
        483484       fi
        484        $(INSTALL_PROGRAM) examples/cpi ${DESTDIR}${exec_prefix}/examples/cpi
         485       $(INSTALL_PROGRAM) examples/cpi ${DESTDIR}${exec_prefix}/share/mpich2/examples/cpi
        485486
        486487install-devdocs:
        487488       (cd doc && $(MAKE) install-devdocs)
    • Fixed $(PREFIX) problem: replace $(PREFIX) with $(prefix) 
      root@r-mpi:/tmp/cdbs-new-patch.aj3114/mpich2-1.0.7.new# for i in $(grep "(PREFIX)" `find . -name "Makefile.in"` | awk '{ print $1 }' | uniq | sed 's#:##'); do mv $i $i.org; cat $i.org | sed 's#(PREFIX)#(prefix)#g' > $i ; rm $i.org; done

      • ./src/mpe2/src/slog2sdk/trace_sample/Makefile.in

        old new  
        77       cd src && $(MAKE)
        88
        99install:
        10        @if [ -n "$(PREFIX)" ] ; then \
        11             ./sbin/install-package -prefix=$(PREFIX) ; \
         10       @if [ -n "$(prefix)" ] ; then \
         11            ./sbin/install-package -prefix=$(prefix) ; \
        1212        else \
        1313            ./sbin/install-package ; \
        1414        fi

      • ./src/mpe2/src/slog2sdk/trace_rlog/Makefile.in

        old new  
        77       cd src && $(MAKE)
        88
        99install:
        10        @if [ -n "$(PREFIX)" ] ; then \
        11             ./sbin/install-package -prefix=$(PREFIX) ; \
         10       @if [ -n "$(prefix)" ] ; then \
         11            ./sbin/install-package -prefix=$(prefix) ; \
        1212        else \
        1313            ./sbin/install-package ; \
        1414        fi

      • ./src/mpe2/src/slog2sdk/Makefile.in

        old new  
        1515         done
        1616
        1717install:
        18        @if [ -n "$(PREFIX)" ] ; then \
        19             ./sbin/install-package -prefix=$(PREFIX) ; \
         18       @if [ -n "$(prefix)" ] ; then \
         19            ./sbin/install-package -prefix=$(prefix) ; \
        2020        else \
        2121            ./sbin/install-package ; \
        2222        fi

      • ./src/mpe2/Makefile.in

        old new  
        7070
        7171########  Installing
        7272install: FORCE_TARGET
        73        @if [ -n "$(PREFIX)" ] ; then \
        74             ./sbin/mpeinstall -prefix=$(PREFIX) -dmode="" ; \
         73       @if [ -n "$(prefix)" ] ; then \
         74            ./sbin/mpeinstall -prefix=$(prefix) -dmode="" ; \
        7575        else \
        7676            ./sbin/mpeinstall -dmode="" ; \
        7777        fi
        7878
        7979installcheck:
        80        @if [ -n "$(PREFIX)" ] ; then \
        81             ./sbin/mpecheckinstall -prefix=$(PREFIX) ; \
         80       @if [ -n "$(prefix)" ] ; then \
         81            ./sbin/mpecheckinstall -prefix=$(prefix) ; \
        8282        else \
        8383            ./sbin/mpecheckinstall ; \
        8484        fi
        8585
        8686installcheck-all:
        87        @if [ -n "$(PREFIX)" ] ; then \
         87       @if [ -n "$(prefix)" ] ; then \
        8888            if [ -n "$(MPERUN)" ] ; then \
        89                 ./sbin/mpecheckinstall -prefix=$(PREFIX) -run="$(MPERUN)" ; \
         89                ./sbin/mpecheckinstall -prefix=$(prefix) -run="$(MPERUN)" ; \
        9090            else \
        91                 ./sbin/mpecheckinstall -prefix=$(PREFIX) -run ; \
         91                ./sbin/mpecheckinstall -prefix=$(prefix) -run ; \
        9292            fi ; \
        9393        else \
        9494            if [ -n "$(MPERUN)" ] ; then \

      • ./src/mpi/romio/Makefile.in

        old new  
        134134
        135135install:
        136136       $(MAKE) clean
        137        @./util/romioinstall -prefix=$(PREFIX)
         137       @./util/romioinstall -prefix=$(prefix)
        138138
        139139# LAM added uninstall target
        140140uninstall:
        141        @./util/romioinstall -prefix=$(PREFIX) -uninstall
         141       @./util/romioinstall -prefix=$(prefix) -uninstall
        142142
        143143# FIXME: To avoid problems with noisy make programs, these should be accessed
        144144# through entries in localdefs .
  • type exit to finish cdbs-edit-patch. You can use exit 1 to skip creating patches if there is something wrong. 
    root@r-mpi:/tmp/cdbs-new-patch.aj3114/mpich2-1.0.7.new# exit
root@r-mpi:~/mpich2-1.0.7# cat debian/patches/01_Makefile.in.patch

Build New debian packages

  • Use dpkg-buildpackage command to build your new packages. 
    root@r-mpi:~/mpich2-1.0.7# dpkg-buildpackage
root@r-mpi:~/mpich2-1.0.7# ls ../*.deb
../libmpich2-1.0_1.0.7-1_i386.deb      ../mpich2_1.0.7-1_i386.deb      ../mpich2-mpd_1.0.7-1_i386.deb
../libmpich2-1.0-dev_1.0.7-1_i386.deb  ../mpich2-doc_1.0.7-1_i386.deb  ../mpich2-mpe_1.0.7-1_i386.deb