= Cluster for Bioinformatics =

[[PageOutline]]


{{{
sudo apt-get -y install gcc g++ make autoconf build-essential
}}}

== JDK 6 ==

{{{
sudo apt-get -y install sun-java6-jdk
}}}

== GNU R ==

{{{
sudo apt-get -y install r-base
sudo apt-get -y install `apt-cache search --names-only "^r-cran" | awk '{ print $1 }' | grep -v "r-cran-rjava" | grep -v "r-cran-rmpi" `
}}}

== GNU R !BioConductor ==

{{{
if [ ! -e biocLite.R ]; then
  sudo wget http://www.bioconductor.org/biocLite.R
fi
if [ ! -e BioConductor.R ]; then
  cat > BioConductor.R << EOF
source(file="$(pwd)/biocLite.R")
biocLite()
}}}

== mpiBLAST ==

 * source: http://www.mpiblast.org/
{{{
sudo apt-get install libncbi6-dev libncbi6
}}}