= 2011-05-04 =

== Bioinformatics ==

 * [wiki:biocluster/Velvet Velvet 安裝紀錄(2009-11-11)]
 * 測試 Velvet 1.1.03 (支援 OpenMP）
 * 系統：Debian Squeeze
{{{
~$ sudo apt-get update; sudo apt-get upgrade; sudo apt-get dist-upgrade
~$ sudo apt-get install build-essential 
~$ wget http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.1.03.tgz
~$ tar zxvf velvet_1.1.03.tgz
~$ cd velvet_1.1.03
~/velvet_1.1.03$ cat Makefile | sed "s#^CFLAG.*#CFLAGS = -Wall -pg#" > 
~/velvet_1.1.03$ mv Makefile.new Makefile
~/velvet_1.1.03$ make
~/velvet_1.1.03$ ./velveth output 17 -fasta -short data/test_long.fa
~/velvet_1.1.03$ du -sh gmon.out 
56K	gmon.out
~/velvet_1.1.03$ ./velvetg output/ -exp_cov 3 -min_contig_lgth 100
~/velvet_1.1.03$ du -sh gmon.out 
152K	gmon.out
}}}