Changes between Version 4 and Version 5 of jazz/11-05-04


Ignore:
Timestamp:
May 4, 2011, 2:31:38 AM (13 years ago)
Author:
jazz
Comment:

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  • jazz/11-05-04

    v4 v5  
    1919{{{
    2020~/velvet_1.1.03$ sudo apt-get install valgrind
    21 ~/velvet_1.1.03$ valgrind -v --leak-check=full --show-reachable=yes ./velveth output 17 -fasta -short data/test_long.fa 2> velveth.log
    22 ~/velvet_1.1.03$ valgrind -v --leak-check=full --show-reachable=yes ./velvetg output/ -exp_cov 3 -min_contig_lgth 100 2> velvetg.log
     21~/velvet_1.1.03$ valgrind --tool=massif ./velveth output 17 -fasta -short data/test_long.fa
     22~/velvet_1.1.03$ ms_print massif.out.10571
     23~/velvet_1.1.03$ valgrind --tool=massif ./velvetg output/ -exp_cov 3 -min_contig_lgth 100
     24~/velvet_1.1.03$ ms_print massif.out.10561
     25~/velvet_1.1.03$ valgrind -v --leak-check=full --show-reachable=yes --read-var-info=yes ./velveth output 17 -fasta -short data/test_long.fa 2> velveth.log
     26~/velvet_1.1.03$ valgrind -v --leak-check=full --show-reachable=yes --read-var-info=yes ./velvetg output/ -exp_cov 3 -min_contig_lgth 100 2> velvetg.log
    2327}}}
    2428 * 使用 gprof 進行 profile 分析