2009-04-13

• [陽明] 安裝 ​R ape 套件，剛開始的錯誤訊息是找不到 stdio.h, stdlib.h, math.h 這些，所以必須裝 libc6-dev 才會有這些檔案。另外，編譯過程中有遇到一些錯誤(找不到 -lgfortran 跟 -llapack)，是因為相依 gfortran 跟 liblapack-dev。

  libc6-dev: /usr/include/bits/stdio.h
  libc6-dev: /usr/include/stdlib.h
  libc6-dev: /usr/include/math.h
  
  liblapack-dev: /usr/lib/liblapack.a
  
  gfortran-4.3: /usr/lib/gcc/x86_64-linux-gnu/4.3/libgfortran.a
  

  # apt-get install libc6-dev gfortran liblapack-dev
  # wget http://cran.r-project.org/src/contrib/gee_4.13-13.tar.gz
  # R CMD INSTALL gee_4.13-13.tar.gz
  # wget http://cran.r-project.org/src/contrib/nlme_3.1-90.tar.gz
  # R CMD INSTALL nlme_3.1-90.tar.gz
  # wget http://cran.r-project.org/src/contrib/lattice_0.17-22.tar.gz
  # R CMD INSTALL lattice_0.17-22.tar.gz
  # wget http://cran.r-project.org/src/contrib/ape_2.3.tar.gz
  # R CMD INSTALL ape_2.3.tar.gz
  

• ​FirePHP - 搭配 Server-Side 的語法，可以在 Firefox 的 FirePHP 擴充套件上顯示 DEBUG Log 資訊。

Parallel : MPI Bindings

• 在 ​MPI 的維基百科 有列舉不同語言的實作
• C/C++/Fortran
  • ​mpiP - Lightweight, Scalable MPI Profiling
• C#
  • ​MPI.NET - High-Performance C# Library for Message Passing
  • ​PureMpi.NET - a completely managed implementation of the message passing interface.
• Python
  • ​mpi4py - MPI for Python - Python bindings for MPI
  • ​Pypar - parallel programming with Python
  • ​pyMPI - Putting the py in MPI
  • ​Scientific Python 中有 MPI 模組
    • ​python-mpi 是 Scientific Python 在 Debian 中 MPI 模組的套件名稱
  • ​Boost.MPI provides an alternative MPI interface from the Python programming language via the boost.mpi module. - 這個 Boost 是整合 C++ 跟 Python 的函式庫
  • ​On-Demand MPI Cluster with Python and EC2 (part 1 of 3)
  • ​MPI Cluster with Python and Amazon EC2 (part 2 of 3)
• Java
  • ​mpiJava - an object-oriented Java interface to the standard Message Passing Interface (MPI).
  • ​MPJ Express - Java for High Performance Computing
• Perl
  • ​Parallel::MPI
  • ​Parallel::MPI::Simple - ​作者的網站
• Ruby
  • ​MPI Ruby - a Ruby binding of MPI.
• OCaml
  • ​OCamlMPI provides Caml bindings for a large subset of MPI functions.
• Octave
  • ​MPI Toolbox for Octave (MPITB)
• Matlab
  • ​MatlabMPI - Parallel Programming with MatlabMPI
  • ​pMatlab - Parallel Matlab Toolbox

Bioinformatics HPC

• ​Biomedical HPC Leadership Summit 2008

• ​National Resource for Biomedical Supercomputing (NSBRC)

• ​BioComputing Hypertext Coursebook
• [​http://www.bioinformatik.de/cgi-bin/browse/Catalog/Research_and_Education/Online_Courses_and_Tutorials/
• ​Biocomputing Course Resource List : Course Syllabi

eyeOS

• ​h3oSSH - eyeOS 上的 SSH Client - ​下載
• ​massAccount - eyeOS 的大量帳號管理工具
• ​eyeOS 中文語系檔