= 2009-04-13 =

 * [陽明] 安裝 [http://cran.r-project.org/web/packages/ape/ R ape 套件]，剛開始的錯誤訊息是找不到 stdio.h, stdlib.h, math.h 這些，所以必須裝 libc6-dev 才會有這些檔案。另外，編譯過程中有遇到一些錯誤(找不到 -lgfortran 跟 -llapack)，是因為相依 gfortran 跟 liblapack-dev。
{{{
libc6-dev: /usr/include/bits/stdio.h
libc6-dev: /usr/include/stdlib.h
libc6-dev: /usr/include/math.h

liblapack-dev: /usr/lib/liblapack.a

gfortran-4.3: /usr/lib/gcc/x86_64-linux-gnu/4.3/libgfortran.a
}}}
   * [備忘] 安裝步驟:
{{{
# apt-get install libc6-dev gfortran liblapack-dev
# wget http://cran.r-project.org/src/contrib/gee_4.13-13.tar.gz
# R CMD INSTALL gee_4.13-13.tar.gz
# wget http://cran.r-project.org/src/contrib/nlme_3.1-90.tar.gz
# R CMD INSTALL nlme_3.1-90.tar.gz
# wget http://cran.r-project.org/src/contrib/lattice_0.17-22.tar.gz
# R CMD INSTALL lattice_0.17-22.tar.gz
# wget http://cran.r-project.org/src/contrib/ape_2.3.tar.gz
# R CMD INSTALL ape_2.3.tar.gz
}}}

 * [http://www.firephp.org/HQ/Use.html FirePHP] - 搭配 Server-Side 的語法，可以在 Firefox 的 FirePHP 擴充套件上顯示 DEBUG Log 資訊。

 * 曾跟 Cloudera 的 Christophe 提過翻譯[http://www.cloudera.com/hadoop-training-basic 錄影]的字幕，不過不確定 [http://vimeo.com/ Vimeo] 是否有支援，需要評估一下。另外，除了 YouTube 以外，還有很多支援字幕的網站，如: [http://dotsub.com/ dotSUB]。

== Parallel : MPI Bindings ==

 * 在 [http://en.wikipedia.org/wiki/Message_Passing_Interface MPI 的維基百科] 有列舉不同語言的實作
 * C/C++/Fortran
   * [http://mpip.sourceforge.net/ mpiP] - Lightweight, Scalable MPI Profiling
 * C#
   * [http://www.osl.iu.edu/research/mpi.net/ MPI.NET] - High-Performance C# Library for Message Passing
   * [http://www.purempi.net/ PureMpi.NET] - a completely managed implementation of the message passing interface.
 * Python
   * [http://code.google.com/p/mpi4py/ mpi4py] - MPI for Python - Python bindings for MPI
   * [http://sourceforge.net/projects/pypar Pypar] - parallel programming with Python
   * [http://pympi.sourceforge.net/ pyMPI] - Putting the py in MPI
   * [http://sourcesup.cru.fr/projects/scientific-py/ Scientific Python] 中有 MPI 模組
     * [http://packages.debian.org/etch/python-mpi python-mpi] 是 Scientific Python 在 Debian 中 MPI 模組的套件名稱
   * [http://www.boost.org/doc/libs/1_38_0/doc/html/mpi/python.html Boost.MPI] provides an alternative MPI interface from the Python  programming language via the boost.mpi module. - 這個 Boost 是整合 C++ 跟 Python 的函式庫
   * [http://www.datawrangling.com/on-demand-mpi-cluster-with-python-and-ec2-part-1-of-3 On-Demand MPI Cluster with Python and EC2 (part 1 of 3)]
   * [http://www.datawrangling.com/mpi-cluster-with-python-and-amazon-ec2-part-2-of-3  MPI Cluster with Python and Amazon EC2 (part 2 of 3)]
 * Java
   * [http://www.hpjava.org/mpiJava.html mpiJava] - an object-oriented Java interface to the standard Message Passing Interface (MPI).
   * [http://mpj-express.org/ MPJ Express] - Java for High Performance Computing
 * Perl
   * [http://search.cpan.org/~josh/Parallel-MPI-0.03/MPI.pm Parallel::MPI]
   * [http://search.cpan.org/~ajgough/Parallel-MPI-Simple-0.03/Simple.pm Parallel::MPI::Simple] - [http://the.earth.li/~alex/perl.html 作者的網站]
 * Ruby
   * [http://mpiruby.sourceforge.net/ MPI Ruby] - a Ruby binding of MPI.
 * OCaml
   * [http://cristal.inria.fr/~xleroy/software.html#ocamlmpi OCamlMPI] provides Caml bindings for a large subset of MPI functions.
 * Octave
   * [http://atc.ugr.es/javier-bin/mpitb MPI Toolbox for Octave (MPITB)]
 * Matlab
   * [http://www.ll.mit.edu/mission/isr/matlabmpi/matlabmpi.html MatlabMPI] - Parallel Programming with MatlabMPI
   * [http://www.ll.mit.edu/mission/isr/pmatlab/pmatlab.html pMatlab] - Parallel Matlab Toolbox

 * 當然 [http://erlang.org/ Erlang] 被視為比 MPI 更容易實作分散/平行化的一種語言，這裡有兩篇參考文章[http://jkndrkn.livejournal.com/205249.html 1][http://www.thinkingparallel.com/2007/03/20/ten-questions-with-joe-armstrong-about-parallel-programming-and-erlang/ 2]。

== Bioinformatics HPC ==

 * [https://biomedhpc.med.harvard.edu Biomedical HPC Leadership Summit 2008]

 * [http://www.nrbsc.org/ National Resource for Biomedical Supercomputing (NSBRC)] 

 * [http://www.techfak.uni-bielefeld.de/bcd/Curric/welcome.html BioComputing Hypertext Coursebook]
 * [http://www.bioinformatik.de/cgi-bin/browse/Catalog/Research_and_Education/Online_Courses_and_Tutorials/  bioinformatik.de]
 * [http://www.techfak.uni-bielefeld.de/bcd/Curric/syllabi.html Biocomputing Course Resource List : Course Syllabi]

== eyeOS ==

 * [http://linux.softpedia.com/get/Internet/eyeOS-Apps/h3oSSH-38762.shtml h3oSSH] - eyeOS 上的 SSH Client - [http://www.eyeos-apps.org/CONTENT/content-files/83166-h3oSSH.eyePackage 下載]
 * [http://linux.softpedia.com/get/Internet/eyeOS-Apps/massAccount-39816.shtml massAccount] - eyeOS 的大量帳號管理工具
 * [http://www.eyeos-apps.org/content/show.php/Chinese+Translation?content=80428 eyeOS 中文語系檔]