= SOAP =

 * 軟體來源：http://soap.genomics.org.cn/soap1/

= 【說明】 =

= 【安裝】 =
{{{
   wget http://soap.genomics.org.cn/soap1/soap_1.11.tar.gz
   tar zxvf sim4.tar.gz
}}}

= 【路徑】 =
{{{
   /opt/soap1
}}}

= 【測試】 =
{{{
   soap -a soap_test_reads.txt -d reference.fasta -o output.txt -s 10 -r 0
}}}

= 【結果】 =
 * 輸出檔案：output.txt
{{{
   1379_372_66_F3  TTCTCAGTCAGTCTTCATGGCAGCA       hhhhhhhhhhhhhhhhhhhhhhhhh       1       a       25      +             scaffold00001   2326    0
   1380_574_1082_F3        TCCTCCACCGCACCTCCTCTCTCTC       hhhhhhhhhhhhhhhhhhhhhhhhh       1       a       25      +       scaffold00001   503     0
   1380_770_1324_F3        AAGAGGAGAGAGCCGAGAGACGACT       hhhhhhhhhhhhhhhhhhhhhhhhh       1       a       25      -       scaffold00001   379     0
   1380_1073_552_F3        CACCCAGACTGCGTTCCTTCAACAC       hhhhhhhhhhhhhhhhhhhhhhhhh       1       a       25      +       scaffold00001   844     0
   1380_1389_821_F3        TTTCACATGCACACGTCAACACCCA       hhhhhhhhhhhhhhhhhhhhhhhhh       1       a       25      -       scaffold00001   4305    2       A->0T40 A->1T40
   1380_1879_1685_F3       TCCGAAATATCCTGCGGATCTTATT       hhhhhhhhhhhhhhhhhhhhhhhhh       1       a       25      +       scaffold00001   2082    1       T->2C40

}}}
{{{
   Load in 1 db seqs, total size 4743 bp. 0 secs passed
   total_kmers: 1048576
   Create seed table. 0 secs passed
   Single read alignment:
   Query: soap_test_reads.txt  Reference: reference.fasta  Output: output.txt
   104 reads finished. 0 secs passed
   Total number of aligned reads: 6 (5.8%)
   Done.
   Finished at Tue Sep 15 15:15:19 2009
   Total time consumed:  0 secs
}}}