http://www.clustal.org/

以 ClustalW 為主。

= 【安裝】 =
{{{
   wget http://www.clustal.org/download/current/clustalw-2.0.11-linux-i386-libcppstatic.tar.gz
   tar zxvf clustalw-2.0.11-linux-i386-libcppstatic.tar.gz
}}}

= 【測試】 =
 1. 指令：
    {{{
clustalw2
    }}}
    畫面：
    {{{

 **************************************************************
 ******** CLUSTAL 2.0.11 Multiple Sequence Alignments  ********
 **************************************************************


     1. Sequence Input From Disc
     2. Multiple Alignments
     3. Profile / Structure Alignments
     4. Phylogenetic trees

     S. Execute a system command
     H. HELP
     X. EXIT (leave program)


Your choice: 

    }}}
 1. 指令
    {{{
1
    }}}
    畫面
    {{{
Sequences should all be in 1 file.

7 formats accepted: 
NBRF/PIR, EMBL/SwissProt, Pearson (Fasta), GDE, Clustal, GCG/MSF,                  RSF.


Enter the name of the sequence file : 

    }}}