| | 1 | == 1.Limitation of Running OpenMP in Kerrighed == |
| | 2 | * Features removed temporarily (Form 2.0.0 version) |
| | 3 | * KerFS |
| | 4 | * Distributed threads |
| | 5 | * Checkpoint |
| | 6 | * Dynamic streams. |
| | 7 | * Solution: |
| | 8 | * If we want to use OpenMP in Kerrighed, I think we must... |
| | 9 | |
| | 10 | [[BR]] |
| | 11 | == 2.Kerrighed modules - Source Code Structure Analysis == |
| | 12 | === 2.1 Kerrighed 0.70 Totally 7 Modules === |
| | 13 | [[Image(krg0.7arch.png)]] |
| | 14 | * Kerrighed extension of Linux Kernel |
| | 15 | * Process & load balancing - '''Aragorn''' |
| | 16 | * Containers - '''Gandalf''' |
| | 17 | * Synchronization - '''Elrond''' |
| | 18 | * Ghosts - '''Nazgul''' |
| | 19 | * Communication - '''Gimli''', '''Gloin''' |
| | 20 | * Tools - '''lluvatar''' |
| | 21 | |
| | 22 | ==== 2.1.1 Probably the Key modules for this project ==== |
| | 23 | |
| | 24 | * '''Gandalf module''': Global memory management -> ('''For Container''') |
| | 25 | * /kerrighed-2.3.0/libs/include/kerrighed_tools.h |
| | 26 | * /kerrighed-2.3.0/modules/tools/krg_services.h |
| | 27 | * /kerrighed-2.3.0/modules/mm/mmap_handler.h[[BR]] |
| | 28 | |
| | 29 | '''/* Memory Part -> Distributed Shared Memory (DSM) , MPI&OpenMP */''' |
| | 30 | |
| | 31 | * '''Aragon module''': Global process management -> ('''For Migration''') |
| | 32 | * /kerrighed-2.3.0/modules/proc/distant_syscalls.c |
| | 33 | * /kerrighed-2.3.0/modules/scheduler/mosix_probe.c |
| | 34 | * /kerrighed-2.3.0/modules/tools/krg_arch.h |
| | 35 | * /kerrighed-2.3.0/modules/rpc/rpcid.h |
| | 36 | * /kerrighed-2.3.0/modules/epm/fork_delay.c |
| | 37 | * /kerrighed-2.3.0/modules/epm/migration.c |
| | 38 | * /kerrighed-2.3.0/modules/epm/procfs.c[[BR]] |
| | 39 | |
| | 40 | '''/* Process & Load balancing Part -> MPI , OpenMP */''' [[BR]] |
| | 41 | |
| | 42 | '''Process migration involves two key phases:''' [[BR]] |
| | 43 | (1) migration of the process execution context [[BR]] |
| | 44 | (2) maintenance of links between the migrated process and the resources [[BR]] |
| | 45 | |
| | 46 | First task: '''Nazgul module''' ---> second task: '''Gandalf module''' -> container & linker |
| | 47 | |
| | 48 | * '''Elrond module''': Synchronization tools for parallel applications -> ('''For Synchronization''') |
| | 49 | * /kerrighed-2.3.0/modules/epm/ghost_process_api.h[[BR]] |
| | 50 | |
| | 51 | '''/* Synchronization Part -> MPI , OpenMP */''' [[BR]] |
| | 52 | |
| | 53 | {{{ |
| | 54 | Elrond provides distributed locks, barriers, semaphores, and wait condition to processes in a implementation that |
| | 55 | supports process checkpointing as well as migration between nodes. |
| | 56 | }}} |
| | 57 | |
| | 58 | * '''Gimli''': |
| | 59 | * /kerrighed-2.3.0/libs/libkerrighed/libcomm.c |
| | 60 | * /kerrighed-2.3.0/libs/include/comm.h |
| | 61 | * /kerrighed-2.3.0/libs/include/kerrighed_tools.h |
| | 62 | * /kerrighed-2.3.0/modules/arch/um/krg_um.c |
| | 63 | * /kerrighed-2.3.0/tools/krg_services.h |
| | 64 | * /kerrighed-2.3.0/tools/krg_arch.h |
| | 65 | * /kerrighed-2.3.0/modules/fs/kerfs/dir_io_linker.c |
| | 66 | * /kerrighed-2.3.0/modules/fs/kerfs/inode_io_linker.c |
| | 67 | * /kerrighed-2.3.0/modules/fs/kerfs/file_io_linker.c [[BR]] |
| | 68 | |
| | 69 | |
| | 70 | |
| | 71 | |
| | 72 | {{{ |
| | 73 | All these distributed services are based on Gimli for their communications. Gimli is a service providing high |
| | 74 | performance communication inside the cluster and a complete abstraction of the communication system to kerrighed that |
| | 75 | makes it portable on various interconnection networks. |
| | 76 | }}} |
| | 77 | |
| | 78 | |
| | 79 | |
| | 80 | [[BR]] |
| | 81 | === 2.2 Kerrighed 2.3.0 Totally 14 Modules === |
| | 82 | [[Image(KerrighedArch.png)]] |
| | 83 | || RPC || || |
| | 84 | || Hotplug || || |
| | 85 | || KDDM || || |
| | 86 | || Capability || || |
| | 87 | || ProcFS || || |
| | 88 | || Sync || || |
| | 89 | || IPC || || |
| | 90 | || FS || || |
| | 91 | || MM || || |
| | 92 | || Dynamic Streams || || |
| | 93 | || Ghost || || |
| | 94 | || Proc || || |
| | 95 | || EPM || || |
| | 96 | || Global Scheduler || || |
| | 97 | * Load Kerrighed Moudles Messages |
| | 98 | {{{ |
| | 99 | $ dmesg |
| | 100 | Start loading Kerrighed... |
| | 101 | Init Kerrighed worker(s)...Init Kerrighed low-level framework... |
| | 102 | Init kerrighed syscall mechanism |
| | 103 | Kerrighed tools - init module |
| | 104 | TIPC: Started in network mode |
| | 105 | TIPC: Own node address <1.1.2>, network identity 1 |
| | 106 | Try to enable bearer on lo:<5>TIPC: Enabled bearer <eth:lo>, discovery domain <1.1.0>, priority 10 |
| | 107 | ok |
| | 108 | Try to enable bearer on eth0:<5>TIPC: Enabled bearer <eth:eth0>, discovery domain <1.1.0>, priority 10 |
| | 109 | ok |
| | 110 | Try to enable bearer on eth1:<4>TIPC: Bearer <eth:eth1> priority adjustment required 10->9 |
| | 111 | TIPC: Enabled bearer <eth:eth1>, discovery domain <1.1.0>, priority 9 |
| | 112 | ok |
| | 113 | RPC initialisation done |
| | 114 | Init Kerrighed low-level framework (nodeid 1) : done |
| | 115 | Init Kerrighed distributed services... |
| | 116 | KDDM initialisation : start |
| | 117 | KDDM set init |
| | 118 | KDDM set init : done |
| | 119 | KDDM initialisation done |
| | 120 | KerMM initialisation : start |
| | 121 | KerMM initialisation done |
| | 122 | DVFS initialisation : start |
| | 123 | FAF: initialisation : start |
| | 124 | FAF: initialisation : done |
| | 125 | DVFS initialisation done |
| | 126 | KerIPC initialisation : start |
| | 127 | KerIPC initialisation done |
| | 128 | Proc initialisation: start |
| | 129 | Proc initialisation: done |
| | 130 | EPM initialisation: start |
| | 131 | EPM initialisation: done |
| | 132 | Init Kerrighed distributed services: done |
| | 133 | Kerrighed... loaded! |
| | 134 | TIPC: Established link <1.1.2:eth0-1.1.3:eth0> on network plane B |
| | 135 | Kerrighed is running on 2 nodes |
| | 136 | |
| | 137 | }}} |
| | 138 | [[BR]] |
| | 139 | === 2.3 Private Variables === |
| | 140 | * '''mmap''' (map pages of memory - by adding a MAP_LOCAL flag) |
| | 141 | * /kerrighed-2.3.0/libs/include/kerrighed_tools.h |
| | 142 | * /kerrighed-2.3.0/modules/tools/krg_services.h |
| | 143 | * /kerrighed-2.3.0/modules/mm/mman.h |
| | 144 | |
| | 145 | {{{ |
| | 146 | It is possible to ensure that memory will be allocated in the virtual address space of each thread of the process |
| | 147 | without linking it to a container, thus ensuring that no coherence will be maintained between the different copies of |
| | 148 | that memory segment across the different threads. |
| | 149 | }}} |
| | 150 | |
| | 151 | [[BR]] |
| | 152 | === 2.4 OpenMP on Kerrighed === |
| | 153 | * Standard '''Pthread''' library replaced by '''krgthread''' library proving the Posix interface on Kerrighed Clusters. |
| | 154 | * Containers to support shared variables in the cluster. |
| | 155 | * A thread using kerrighed synchronization primitives can migrate and be checkpointed at any time, and except when |
| | 156 | blocked in the OS. |