Index: /GSEXmlParser/GSE2109_family.xml =================================================================== --- /GSEXmlParser/GSE2109_family.xml (revision 38) +++ /GSEXmlParser/GSE2109_family.xml (revision 38) @@ -0,0 +1,136240 @@ + + + + + + MichaelBittner + mbittner@tgen.org + 602-343-8808 + 602-343-8440 + expO + IGC +
+ 445 N. 5th Street + Phoenix + AZ + 85004 + USA +
+ www.intgen.org + + + + + geo@ncbi.nlm.nih.gov, support@affymetrix.com + 888-362-2447 + Affymetrix, Inc. +
+ Santa Clara + CA + 95051 + USA +
+ http://www.affymetrix.com/index.affx + + + + Gene Expression Omnibus (GEO) + GEO + NCBI NLM NIH + http://www.ncbi.nlm.nih.gov/geo + geo@ncbi.nlm.nih.gov + + + + + 2003-11-07 + 2003-11-07 + 2007-09-04 + + +Affymetrix GeneChip Human Genome U133 Plus 2.0 Array + + GPL570 + in situ oligonucleotide + commercial + Homo sapiens + Affymetrix + +see manufacturer's web site + + +Complete coverage of the Human Genome U133 Set plus 6,500 additional genes for analysis of over 47,000 transcripts +All probe sets represented on the GeneChip Human Genome U133 Set are identically replicated on the GeneChip Human Genome U133 Plus 2.0 Array. The sequences from which these probe sets were derived were selected from GenBank®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 133, April 20, 2001) and then refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the University of California, Santa Cruz Golden-Path human genome database (April 2001 release). +In addition, there are 9,921 new probe sets representing approximately 6,500 new genes. These gene sequences were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from the UniGene database (Build 159, January 25, 2003) and refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the NCBI human genome assembly (Build 31). + + + http://www.affymetrix.com/support/technical/byproduct.affx?product=hg-u133-plus + http://www.affymetrix.com/analysis/index.affx + + + ID + Affymetrix Probe Set ID + https://www.affymetrix.com/LinkServlet?array=U133_PLUS&probeset= + + + GB_ACC + GenBank Accession Number + http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=Nucleotide&term= + + + SPOT_ID + identifies controls + + + Species Scientific Name + The genus and species of the organism represented by the probe set. + + + Annotation Date + The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site. + + + Sequence Type + + + Sequence Source + The database from which the sequence used to design this probe set was taken. + + + Target Description + + + Representative Public ID + The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used. + + + Gene Title + Title of Gene represented by the probe set. + + + Gene Symbol + A gene symbol, when one is available (from UniGene). + + + Entrez Gene + Entrez Gene database UID + http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids= + + + RefSeq Transcript ID + References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet. + + + Gene Ontology Biological Process + Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended". + + + Gene Ontology Cellular Component + Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended". + + + Gene Ontology Molecular Function + Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended". + + +GPL570-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 13491 + + GSM38051 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Pathological T: 4b +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38051/GSM38051.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38051-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Corpus Uteri - 2045 + + GSM38052 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: 0-5 +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4B +Pathological Grade: X +Primary Site: Corpus Uteri +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38052/GSM38052.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38052-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Prostate - 2047 + + GSM38053 + RNA + 1 + + Prostate Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 106 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38053/GSM38053.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38053-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 2051 + + GSM38054 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Other +Ethnic Background: Hawaiian +Tobacco Use : No +Family History of Cancer?: No +Mammogram: Yes +Oral contraceptives?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38054/GSM38054.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38054-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 2471 + + GSM38055 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38055/GSM38055.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38055-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Spleen - 2475 + + GSM38056 + RNA + 1 + + Spleen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal mass +Retreatment T: 3c +Retreatment N: X +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38056/GSM38056.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38056-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 2477 + + GSM38057 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 43 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38057/GSM38057.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38057-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 2479 + + GSM38058 + RNA + 1 + + Bronchus & Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38058/GSM38058.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38058-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 2481 + + GSM38059 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38059/GSM38059.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38059-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 2483 + + GSM38060 + RNA + 1 + + Bronchus & Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 68 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38060/GSM38060.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38060-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 2485 + + GSM38061 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38061/GSM38061.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38061-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 3377 + + GSM38062 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 36 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38062/GSM38062.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38062-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8170 + + GSM38063 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 4b +Pathological N: 1a +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38063/GSM38063.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38063-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Ovary - 8172 + + GSM38064 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38064/GSM38064.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38064-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Omentum - 8174 + + GSM38065 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 142 +Prior Therapy: Chemotherapy +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38065/GSM38065.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38065-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Abdominal wall mass - 8176 + + GSM38066 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38066/GSM38066.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38066-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Uterus - 8180 + + GSM38067 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38067/GSM38067.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38067-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Small Bowel - 8182 + + GSM38068 + RNA + 1 + + Small bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Hormonal Treatment +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 1 +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Fallopian Tube +Histology: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38068/GSM38068.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38068-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Myometrium - 8184 + + GSM38069 + RNA + 1 + + Uterus, NOS + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Grade +Clinical Value: High +Clinical Question: Stage +Clinical Value: No AJCC scheme for this site and histology +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Epithelioid leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38069/GSM38069.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38069-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Omentum - 8186 + + GSM38070 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 105 +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 4 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary vs Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38070/GSM38070.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38070-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Peritoneum - 8188 + + GSM38071 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38071/GSM38071.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38071-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Adrenal gland - 8190 + + GSM38072 + RNA + 1 + + Adrenal gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Adrenals +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Lung +Histology: Metastatic Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38072/GSM38072.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38072-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Kidney - 8192 + + GSM38073 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38073/GSM38073.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38073-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8194 + + GSM38074 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38074/GSM38074.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38074-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8196 + + GSM38075 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38075/GSM38075.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38075-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2005-05-27 + + +Lymph Nodes - 8198 + + GSM38076 + RNA + 1 + + Lymph Nodes + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Primary Site: Lymph Nodes +Histology: Mature (peripheral) B-cell lymphoma +Patient Age: 50-60 +Ethnic Background: Caucasian +Sex: Male +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Tobacco Use : Yes +Presenting Symptoms: Lymphadenopathy +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Have you ever had mononucleousis?: No + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38076/GSM38076.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38076-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8200 + + GSM38077 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38077/GSM38077.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38077-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8202 + + GSM38078 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38078/GSM38078.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38078-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Prostate - 8206 + + GSM38079 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 11-15 +Cancer discovered by digital exam?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38079/GSM38079.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38079-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8208 + + GSM38080 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 59 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38080/GSM38080.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38080-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8210 + + GSM38081 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38081/GSM38081.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38081-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8212 + + GSM38082 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 70 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38082/GSM38082.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38082-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8214 + + GSM38083 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 37 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38083/GSM38083.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38083-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Uterus - 8216 + + GSM38084 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 4 +Pathological N: X +Pathological M: 0 +Pathological Stage: 4A +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38084/GSM38084.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38084-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Axillary Lymph Nodes - 8218 + + GSM38085 + RNA + 1 + + Axillary Lymph Nodes + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3b +Retreatment N: 0 +Retreatment M: 1a +Retreatment Metastatic Sites: Lymph Nodes +Retreatment Stage: 4 +Primary Site: Skin of Left Flank +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38085/GSM38085.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38085-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8220 + + GSM38086 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 0 +Pathological N: 0(i+) +Pathological M: 0 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38086/GSM38086.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38086-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Fallopian tube - 8224 + + GSM38087 + RNA + 1 + + Fallopian Tube + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological T: 3c +Pathological Grade: 3 +Primary Site: Fallopian tube +Histology: Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38087/GSM38087.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38087-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Ovary - 8226 + + GSM38088 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38088/GSM38088.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38088-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8228 + + GSM38089 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38089/GSM38089.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38089-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8230 + + GSM38090 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38090/GSM38090.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38090-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8232 + + GSM38091 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38091/GSM38091.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38091-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8234 + + GSM38092 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 26-30 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38092/GSM38092.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38092-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Omentum - 8236 + + GSM38093 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Primary Site: Unknown +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38093/GSM38093.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38093-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8238 + + GSM38094 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38094/GSM38094.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38094-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Omentum - 8240 + + GSM38095 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Hormonal Treatment +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 11-15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Peritoneum +Retreatment Stage: 4 +Retreatment Grade: 3 +Retreatment ER: Positive +Retreatment PR: Positive +Primary Site: Breast +Histology: Metastatic Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38095/GSM38095.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38095-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Rectum - 8242 + + GSM38096 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 119 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Barium enema +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38096/GSM38096.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38096-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Skin - 8244 + + GSM38097 + RNA + 1 + + Skin + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Primary Site: Skin of arm +Histology: Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38097/GSM38097.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38097-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8246 + + GSM38098 + RNA + 1 + + Rectosigmoid Junction + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38098/GSM38098.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38098-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8248 + + GSM38099 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38099/GSM38099.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38099-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 8250 + + GSM38100 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38100/GSM38100.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38100-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Stomach - 8252 + + GSM38101 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Clinical Question: Grade +Clinical Value: Low +Clinical Question: Stage +Clinical Value: No AJCC scheme for this site and histology +Primary Site: Stomach +Clinical Question: Histology +Clinical Value: Gastrointestinal stromal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38101/GSM38101.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38101-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8254 + + GSM38102 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38102/GSM38102.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38102-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 8256 + + GSM38103 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Persistent Cough +Pathological T: 2 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38103/GSM38103.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38103-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 8258 + + GSM38104 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 56 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38104/GSM38104.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38104-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8260 + + GSM38105 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38105/GSM38105.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38105-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8264 + + GSM38106 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 43 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38106/GSM38106.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38106-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8266 + + GSM38107 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38107/GSM38107.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38107-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Liver - 8268 + + GSM38108 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Pathological T: 4 +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Vulva +Histology: Metastatic Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38108/GSM38108.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38108-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8270 + + GSM38109 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4b +Pathological N: 2a +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38109/GSM38109.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38109-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8272 + + GSM38110 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38110/GSM38110.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38110-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 1003 + + GSM46814 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46814/GSM46814.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46814-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 1006 + + GSM46815 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46815/GSM46815.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46815-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 1017 + + GSM46816 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Clinical T: 1c +Clinical N: 1 +Clinical M: 0 +Clinical Stage: 2A +Clinical Grade: 3 +Clinical ER: Negative +Clinical PR: Negative +Clinical HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46816/GSM46816.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46816-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1020 + + GSM46817 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46817/GSM46817.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46817-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 1022 + + GSM46818 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Primary Site: Pelvic peritoneum +Histology: Metastatic Endometrial Stromal Sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46818/GSM46818.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46818-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Rectum - 1043 + + GSM46819 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 109 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46819/GSM46819.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46819-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 1048 + + GSM46820 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.41 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: None +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46820/GSM46820.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46820-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1057 + + GSM46821 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for Unknown Primary +Primary Site: Unknown +Clinical Question: Histology +Clinical Value: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46821/GSM46821.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46821-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Abdominal Mass - 1060 + + GSM46822 + RNA + 1 + + Abdominal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Pathological T: 3a +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Corpus Uteri +Histology: Metastatic Malignant mixed mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46822/GSM46822.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46822-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 1293 + + GSM46823 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46823/GSM46823.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46823-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1299 + + GSM46824 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46824/GSM46824.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46824-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 1304 + + GSM46825 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46825/GSM46825.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46825-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 1306 + + GSM46826 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46826/GSM46826.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46826-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 1307 + + GSM46827 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 27 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Negative +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal and Lobular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46827/GSM46827.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46827-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Liver or Omentum - 1308 + + GSM46828 + RNA + 1 + + Liver or Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46828/GSM46828.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46828-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Pelvic Lymph Node - 1310 + + GSM46829 + RNA + 1 + + Pelvic lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological T: 4a +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46829/GSM46829.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46829-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1311 + + GSM46830 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46830/GSM46830.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46830-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1313 + + GSM46831 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46831/GSM46831.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46831-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 1315 + + GSM46832 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: is +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 0 +Primary Site: Colon +Histology: Carcinoma in situ arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46832/GSM46832.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46832-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1316 + + GSM46833 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: Yes +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46833/GSM46833.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46833-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 1319 + + GSM46834 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46834/GSM46834.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46834-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Abdominal wall mass - 1321 + + GSM46835 + RNA + 1 + + Abdominal wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3a +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46835/GSM46835.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46835-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 1322 + + GSM46836 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Mammogram calcifications?: Yes +Primary Site: Breast +Histology: Intraductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46836/GSM46836.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46836-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Prostate - 1324 + + GSM46837 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46837/GSM46837.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46837-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +R adnexa or metastatic transverse colon nodule - 1350 + + GSM46838 + RNA + 1 + + R adnexa or metastatic transverse colon nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46838/GSM46838.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46838-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1351 + + GSM46839 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46839/GSM46839.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46839-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1353 + + GSM46840 + RNA + 1 + + L Adnexa + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46840/GSM46840.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46840-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 1354 + + GSM46841 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46841/GSM46841.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46841-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Paracolic gutter - 1355 + + GSM46842 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46842/GSM46842.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46842-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1502 + + GSM46843 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46843/GSM46843.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46843-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1503 + + GSM46844 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Grade: 2 +Primary Site: Bladder +Histology: Metastatic non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46844/GSM46844.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46844-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2006-01-10 + + +Colon - 2049 + + GSM46845 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.01 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Screening studies performed?: No +Diagnosis made by: Sigmoidoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46845/GSM46845.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46845-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 21808 + + GSM46846 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 27 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46846/GSM46846.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46846-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 22198 + + GSM46847 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 65 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46847/GSM46847.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46847-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Liver - 22202 + + GSM46848 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: X +Primary Site: Exocrine Pancreas +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46848/GSM46848.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46848-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22204 + + GSM46849 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46849/GSM46849.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46849-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 22208 + + GSM46850 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46850/GSM46850.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46850-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ileum - 22212 + + GSM46851 + RNA + 1 + + Ileum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Primary Site: Cervix Uteri +Histology: Metastatic Squamous Cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46851/GSM46851.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46851-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22214 + + GSM46852 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46852/GSM46852.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46852-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 22218 + + GSM46853 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46853/GSM46853.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46853-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterus - 22220 + + GSM46854 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.06 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46854/GSM46854.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46854-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22223 + + GSM46855 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46855/GSM46855.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46855-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Rectosigmoid - 22225 + + GSM46856 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.32 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 31 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46856/GSM46856.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46856-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 22227 + + GSM46857 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.23 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Stool blood test (guiac) +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46857/GSM46857.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46857-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 22229 + + GSM46858 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46858/GSM46858.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46858-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22233 + + GSM46859 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46859/GSM46859.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46859-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Lung - 22235 + + GSM46860 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.37 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46860/GSM46860.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46860-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 22237 + + GSM46861 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46861/GSM46861.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46861-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22239 + + GSM46862 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46862/GSM46862.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46862-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22241 + + GSM46863 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46863/GSM46863.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46863-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 22245 + + GSM46864 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46864/GSM46864.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46864-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 22247 + + GSM46865 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Black tarry stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46865/GSM46865.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46865-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Prostate - 22249 + + GSM46866 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +PSA: Elevated +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46866/GSM46866.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46866-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Uterus - 22251 + + GSM46867 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3a +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46867/GSM46867.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46867-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Lung - 22255 + + GSM46868 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.52 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46868/GSM46868.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46868-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 22259 + + GSM46869 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.69 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46869/GSM46869.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46869-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22263 + + GSM46870 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46870/GSM46870.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46870-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22269 + + GSM46871 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 31-35 +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: X +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46871/GSM46871.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46871-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Bladder or Kidney - 22273 + + GSM46872 + RNA + 1 + + Urinary Tract, NOS + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Clinical Question: Stage +Clinical Value: No AJCC scheme for unknown primary +Clinical Question: Grade +Clinical Value: 2 +Primary Site: Urinary tract, NOS +Clinical Question: Histology +Clinical Value: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46872/GSM46872.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46872-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 2323 + + GSM46873 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46873/GSM46873.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46873-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 2324 + + GSM46874 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46874/GSM46874.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46874-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 23864 + + GSM46875 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 76 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46875/GSM46875.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46875-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 23866 + + GSM46876 + RNA + 1 + + Uterine Serosa + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal pain +Clinical Grade: 3 +Primary Site: Peritoneum +Histology: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46876/GSM46876.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46876-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 23876 + + GSM46877 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.42 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46877/GSM46877.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46877-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 23880 + + GSM46878 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46878/GSM46878.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46878-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Rectum - 23882 + + GSM46879 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2A +Retreatment Grade: 2 +Retreatment Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46879/GSM46879.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46879-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23886 + + GSM46880 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46880/GSM46880.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46880-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 23888 + + GSM46881 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46881/GSM46881.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46881-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 23896 + + GSM46882 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46882/GSM46882.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46882-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23898 + + GSM46883 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46883/GSM46883.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46883-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 23900 + + GSM46884 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46884/GSM46884.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46884-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23902 + + GSM46885 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46885/GSM46885.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46885-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 23904 + + GSM46886 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 1 +Primary Site: Ovary +Histology: Benign serous cystadenoma of borderline malignancy + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46886/GSM46886.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46886-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 23908 + + GSM46887 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46887/GSM46887.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46887-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 23910 + + GSM46888 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Presenting Symptoms: Abdominal pain +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46888/GSM46888.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46888-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Renal Pelvis - 23912 + + GSM46889 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Primary Site: Renal Pelvis +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46889/GSM46889.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46889-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23914 + + GSM46890 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 31-35 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46890/GSM46890.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46890-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23916 + + GSM46891 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46891/GSM46891.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46891-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 23918 + + GSM46892 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46892/GSM46892.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46892-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23920 + + GSM46893 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46893/GSM46893.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46893-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23922 + + GSM46894 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46894/GSM46894.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46894-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 23924 + + GSM46895 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46895/GSM46895.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46895-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterus - 23932 + + GSM46896 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.36 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46896/GSM46896.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46896-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 23936 + + GSM46897 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Vaginal bleeding +Pathological T: 2b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid adenocarcinoma with sguamous metaplasia + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46897/GSM46897.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46897-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 23938 + + GSM46898 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46898/GSM46898.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46898-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 23940 + + GSM46899 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46899/GSM46899.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46899-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 23944 + + GSM46900 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.53 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma In-situ (DCIS) with focal Comedo Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46900/GSM46900.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46900-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Rectosigmoid Colon - 23946 + + GSM46901 + RNA + 1 + + Rectosigmoid Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.51 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46901/GSM46901.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46901-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Omentum - 23948 + + GSM46902 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.32 +Patient Age: 60-70 +Gender: Female +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 210 +Prior Therapy: Chemotherapy +Primary Site: Unknown +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46902/GSM46902.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46902-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 23950 + + GSM46903 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: GI Tract, NOS +Clinical Question: Histology +Clinical Value: Metastatic Mucinous adenocarcinoma consistent with gastrointestinal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46903/GSM46903.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46903-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-29 + + +Lung - 23952 + + GSM46904 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.47 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46904/GSM46904.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46904-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 23954 + + GSM46905 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.66 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46905/GSM46905.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46905-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Omentum - 23956 + + GSM46906 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.26 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Primary Site: Fallopian Tube +Histology: Metastatic Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46906/GSM46906.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46906-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Peritoneum - 23960 + + GSM46907 + RNA + 1 + + Soft Tissue Abdominal Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Retreatment Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46907/GSM46907.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46907-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23975 + + GSM46908 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46908/GSM46908.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46908-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2006-01-10 + + +Lung - 2491 + + GSM46909 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.47 +Gender: Female +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46909/GSM46909.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46909-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Ovary - 29227 + + GSM46910 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.57 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46910/GSM46910.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46910-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 29229 + + GSM46911 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme +Clinical Question: Grade +Clinical Value: 1 +Primary Site: Ovary +Clinical Question: Histology +Clinical Value: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46911/GSM46911.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46911-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Uterus - 29231 + + GSM46912 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46912/GSM46912.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46912-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 29233 + + GSM46913 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46913/GSM46913.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46913-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterus - 29239 + + GSM46914 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.72 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46914/GSM46914.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46914-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 29241 + + GSM46915 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.42 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46915/GSM46915.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46915-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Perihepatic Mass - 29243 + + GSM46916 + RNA + 1 + + Perihepatic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46916/GSM46916.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46916-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-29 + + +Small Intestine - 29247 + + GSM46917 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.81 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: Yes +Primary Site: Small Intestine +Histology: Metastatic Follicular Lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46917/GSM46917.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46917-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Ovary - 29249 + + GSM46918 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46918/GSM46918.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46918-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Cervix Uteri - 29251 + + GSM46919 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, verrucous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46919/GSM46919.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46919-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Bladder - 29253 + + GSM46920 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.57 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Primary Site: Bladder +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46920/GSM46920.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46920-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 29255 + + GSM46921 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46921/GSM46921.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46921-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Peritoneum - 29257 + + GSM46922 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.29 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46922/GSM46922.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46922-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterine Corpus - 29259 + + GSM46923 + RNA + 1 + + Uterine Corpus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.31 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46923/GSM46923.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46923-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 29263 + + GSM46924 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.33 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46924/GSM46924.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46924-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 29265 + + GSM46925 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bloating +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46925/GSM46925.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46925-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Corpus uteri - 29269 + + GSM46926 + RNA + 1 + + Corpus uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Ewing's sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46926/GSM46926.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46926-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Uterus - 29275 + + GSM46927 + RNA + 1 + + Uterine Corpus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46927/GSM46927.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46927-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 29277 + + GSM46928 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Workplace or household smokers?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Primary Site: Lung +Histology: Mucoepidermoid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46928/GSM46928.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46928-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 29279 + + GSM46929 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46929/GSM46929.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46929-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 29287 + + GSM46930 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46930/GSM46930.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46930-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 29291 + + GSM46931 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46931/GSM46931.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46931-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Abdominal Wall Fascia - 29293 + + GSM46932 + RNA + 1 + + Abdominal wall fascia + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4B +Retreatment Grade: 2 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46932/GSM46932.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46932-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 29303 + + GSM46933 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46933/GSM46933.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46933-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 29313 + + GSM46934 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.37 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46934/GSM46934.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46934-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 31810 + + GSM46935 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46935/GSM46935.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46935-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 31812 + + GSM46936 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46936/GSM46936.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46936-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterine Corpus - 31814 + + GSM46937 + RNA + 1 + + Uterine Corpus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.22 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46937/GSM46937.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46937-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31816 + + GSM46938 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.45 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Primary Site: Breast +Histology: Metaplastic Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46938/GSM46938.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46938-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 31818 + + GSM46939 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46939/GSM46939.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46939-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 31820 + + GSM46940 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.51 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46940/GSM46940.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46940-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Lung - 31822 + + GSM46941 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.34 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: Yes +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46941/GSM46941.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46941-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Cervix - 31824 + + GSM46942 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46942/GSM46942.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46942-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Uterus - 31826 + + GSM46943 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46943/GSM46943.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46943-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 31828 + + GSM46944 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46944/GSM46944.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46944-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Liver - 31830 + + GSM46945 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 51 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46945/GSM46945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46945-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Adrenal Gland - 31832 + + GSM46946 + RNA + 1 + + Adrenal gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Adrenals +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46946/GSM46946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46946-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31834 + + GSM46947 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.58 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: None +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46947/GSM46947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46947-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Ovary - 31836 + + GSM46948 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.58 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46948/GSM46948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46948-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Endometrium - 31840 + + GSM46949 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.53 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46949/GSM46949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46949-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Ovary - 31842 + + GSM46950 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.22 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Dysgerminoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46950/GSM46950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46950-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +R thigh mass - 31846 + + GSM46951 + RNA + 1 + + R thigh mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Radiation +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Sarcoma +Histology: Malignant fibrous histiocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46951/GSM46951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46951-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31861 + + GSM46952 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46952/GSM46952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46952-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31865 + + GSM46953 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.55 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Number of years of use? (Oral contraceptives): None +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: None +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46953/GSM46953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46953-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31867 + + GSM46954 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.35 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46954/GSM46954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46954-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31871 + + GSM46955 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.56 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46955/GSM46955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46955-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 31877 + + GSM46956 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.14 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46956/GSM46956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46956-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Kidney - 31879 + + GSM46957 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.64 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46957/GSM46957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46957-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31881 + + GSM46958 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.03 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46958/GSM46958.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46958-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 31901 + + GSM46959 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 36-40 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46959/GSM46959.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46959-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 31903 + + GSM46960 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Lung +Histology: Adenosquamous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46960/GSM46960.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46960-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 31907 + + GSM46961 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 66-70 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 63 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Papillary adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46961/GSM46961.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46961-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 37977 + + GSM46962 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.24 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46962/GSM46962.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46962-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 4192 + + GSM46963 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Radiation +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46963/GSM46963.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46963-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 4197 + + GSM46964 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46964/GSM46964.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46964-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 4202 + + GSM46965 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 26 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46965/GSM46965.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46965-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 8178 + + GSM46966 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46966/GSM46966.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46966-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 8204 + + GSM46967 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 34 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46967/GSM46967.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46967-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 8222 + + GSM46968 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46968/GSM46968.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46968-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Rectosigmoid - 8262 + + GSM46969 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.45 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 300 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46969/GSM46969.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46969-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Liver - 8274 + + GSM46970 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.14 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 300 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Rectosigmoid +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46970/GSM46970.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46970-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Liver - 8276 + + GSM46971 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46971/GSM46971.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46971-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Rectosigmoid - 8278 + + GSM46972 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46972/GSM46972.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46972-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 8280 + + GSM46973 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46973/GSM46973.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46973-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 8282 + + GSM46974 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46974/GSM46974.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46974-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 8284 + + GSM46975 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Lung +Histology: Mucin-producing adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46975/GSM46975.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46975-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 8290 + + GSM46976 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46976/GSM46976.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46976-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Mesenteric Lymph Node - 1002 + + GSM53026 + RNA + 1 + + Mesenteric Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53026/GSM53026.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53026-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 1008 + + GSM53027 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 36-40 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53027/GSM53027.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53027-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Breast - 1009 + + GSM53028 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53028/GSM53028.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53028-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1018 + + GSM53029 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53029/GSM53029.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53029-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Bladder - 1019 + + GSM53030 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Primary Site: Bladder +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53030/GSM53030.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53030-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1025 + + GSM53031 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53031/GSM53031.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53031-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 1032 + + GSM53032 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53032/GSM53032.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53032-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1033 + + GSM53033 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 26-30 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53033/GSM53033.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53033-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1034 + + GSM53034 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 16-20 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53034/GSM53034.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53034-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1035 + + GSM53035 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53035/GSM53035.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53035-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1040 + + GSM53036 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53036/GSM53036.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53036-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Omentum - 1041 + + GSM53037 + RNA + 1 + + Abdominal wall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: X +Primary Site: Exocrine Pancreas +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53037/GSM53037.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53037-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Lymph Node - 1042 + + GSM53038 + RNA + 1 + + Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Lymphadenopathy +Presenting Symptoms: Night sweats +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53038/GSM53038.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53038-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Stomach - 1049 + + GSM53039 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Primary Site: Stomach +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53039/GSM53039.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53039-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Omentum - 1059 + + GSM53040 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53040/GSM53040.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53040-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Small intestine - 1222 + + GSM53041 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Corpus Uteri +Clinical Question: Histology +Clinical Value: Metastatic Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53041/GSM53041.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53041-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Uterine Cervix - 1223 + + GSM53042 + RNA + 1 + + Uterine Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Primary Site: Uterine Cervix +Histology: Squamous Cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53042/GSM53042.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53042-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Kidney - 1225 + + GSM53043 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 29 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53043/GSM53043.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53043-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Small intestine - 1226 + + GSM53044 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this site/histology +Clinical Question: T +Clinical Value: Tumor size is 1cm-2cm +Clinical Question: N +Clinical Value: Lymph nodes positive +Clinical Question: M +Clinical Value: No distant metastatic disease +Primary Site: Small intestine +Clinical Question: Histology +Clinical Value: Neuroendocrine carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53044/GSM53044.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53044-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1228 + + GSM53045 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53045/GSM53045.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53045-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Pancreas - 1229 + + GSM53046 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 100 +Clinical Question: Histology +Clinical Value: Non-functional islet cell tumor +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme For this Histology/Site +Primary Site: Pancreas + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53046/GSM53046.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53046-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1232 + + GSM53047 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53047/GSM53047.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53047-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Soft tissue of abdomen - 1233 + + GSM53048 + RNA + 1 + + Soft tissue of abdomen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Primary Site: Soft Tissue of abdomen +Histology: Liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53048/GSM53048.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53048-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Omentum - 1235 + + GSM53049 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Peritoneum +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53049/GSM53049.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53049-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Uterus - 1236 + + GSM53050 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Sarcoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53050/GSM53050.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53050-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1237 + + GSM53051 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma In situ + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53051/GSM53051.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53051-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1239 + + GSM53052 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53052/GSM53052.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53052-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1240 + + GSM53053 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 33 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53053/GSM53053.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53053-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1241 + + GSM53054 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53054/GSM53054.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53054-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Colon - 1259 + + GSM53055 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53055/GSM53055.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53055-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1270 + + GSM53056 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53056/GSM53056.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53056-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 1271 + + GSM53057 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53057/GSM53057.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53057-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1272 + + GSM53058 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53058/GSM53058.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53058-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 1290 + + GSM53059 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53059/GSM53059.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53059-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 1296 + + GSM53060 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53060/GSM53060.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53060-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Prostate - 1317 + + GSM53061 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 57 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: Yes +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53061/GSM53061.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53061-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 1320 + + GSM53062 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53062/GSM53062.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53062-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1323 + + GSM53063 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53063/GSM53063.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53063-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 1633 + + GSM53064 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Radiation +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53064/GSM53064.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53064-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1634 + + GSM53065 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53065/GSM53065.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53065-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1636 + + GSM53066 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Primary Site: Unknown +Histology: Metastatic Malignant Neoplasm, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53066/GSM53066.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53066-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1637 + + GSM53067 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53067/GSM53067.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53067-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1639 + + GSM53068 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53068/GSM53068.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53068-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1643 + + GSM53069 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53069/GSM53069.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53069-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1646 + + GSM53070 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Undifferentiated Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53070/GSM53070.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53070-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ureter - 1647 + + GSM53071 + RNA + 1 + + Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Primary Site: Ureter +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53071/GSM53071.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53071-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +R hip/buttock mass - 1654 + + GSM53072 + RNA + 1 + + R hip/buttock mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Soft Tissue of buttock +Histology: Chondrosarcoma, extraskeletal + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53072/GSM53072.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53072-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1655 + + GSM53073 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53073/GSM53073.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53073-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Thyroid - 1657 + + GSM53074 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53074/GSM53074.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53074-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1659 + + GSM53075 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53075/GSM53075.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53075-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 20295 + + GSM53076 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53076/GSM53076.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53076-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 20296 + + GSM53077 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53077/GSM53077.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53077-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 20308 + + GSM53078 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53078/GSM53078.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53078-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 20309 + + GSM53079 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53079/GSM53079.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53079-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-02 + + +Breast - 22196 + + GSM53080 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53080/GSM53080.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53080-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 22210 + + GSM53081 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 180 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53081/GSM53081.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53081-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Omentum - 22216 + + GSM53082 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53082/GSM53082.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53082-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 22231 + + GSM53083 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53083/GSM53083.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53083-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 22253 + + GSM53084 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53084/GSM53084.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53084-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Vulva - 22257 + + GSM53085 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological T: 2 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Vulva +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53085/GSM53085.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53085-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 22271 + + GSM53086 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 33 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Number of years of use? (Oral contraceptives): None +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53086/GSM53086.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53086-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Rectosigmoid - 2310 + + GSM53087 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53087/GSM53087.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53087-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Liver - 2311 + + GSM53088 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: Yes +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53088/GSM53088.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53088-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2312 + + GSM53089 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Number of years of use? (Oral contraceptives): None +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Hormonal therapy (# of Years)?: 11-15 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53089/GSM53089.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53089-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Liver - 2313 + + GSM53090 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: Yes +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53090/GSM53090.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53090-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2314 + + GSM53091 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53091/GSM53091.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53091-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 2316 + + GSM53092 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53092/GSM53092.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53092-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Corpus Uteri - 2317 + + GSM53093 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53093/GSM53093.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53093-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2319 + + GSM53094 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53094/GSM53094.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53094-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2321 + + GSM53095 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53095/GSM53095.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53095-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2322 + + GSM53096 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53096/GSM53096.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53096-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Bladder - 2328 + + GSM53097 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Primary Site: Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53097/GSM53097.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53097-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 23862 + + GSM53098 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53098/GSM53098.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53098-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 23874 + + GSM53099 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53099/GSM53099.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53099-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 23884 + + GSM53100 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 4 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53100/GSM53100.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53100-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Lymph Node - 23906 + + GSM53101 + RNA + 1 + + Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Lymphadenopathy +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53101/GSM53101.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53101-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 23926 + + GSM53102 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53102/GSM53102.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53102-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 23928 + + GSM53103 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53103/GSM53103.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53103-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 23930 + + GSM53104 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Primary Site: Ovary +Histology: Mucinous cystic tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53104/GSM53104.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53104-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 23934 + + GSM53105 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53105/GSM53105.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53105-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Colon - 23958 + + GSM53106 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53106/GSM53106.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53106-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2495 + + GSM53107 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Oral contraceptives?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53107/GSM53107.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53107-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 29235 + + GSM53108 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53108/GSM53108.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53108-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 29237 + + GSM53109 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53109/GSM53109.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53109-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 29245 + + GSM53110 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Relapse Since Primary Treatment: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53110/GSM53110.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53110-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Colon - 29267 + + GSM53111 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Retreatment T: 4 +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 4A +Retreatment Grade: X +Primary Site: Endometrium +Histology: Metastatic Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53111/GSM53111.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53111-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Cervix - 29273 + + GSM53112 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Primary Site: Cervix +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53112/GSM53112.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53112-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Colon - 29281 + + GSM53113 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53113/GSM53113.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53113-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Prostate - 29283 + + GSM53114 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53114/GSM53114.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53114-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 29285 + + GSM53115 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4b +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53115/GSM53115.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53115-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Soft Tissue of Knee - 29289 + + GSM53116 + RNA + 1 + + Soft Tissue of Knee + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Primary Site: Soft Tissue of Knee +Histology: Ewings sarcoma/primitive neuroectodermal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53116/GSM53116.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53116-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Urinary Bladder - 29295 + + GSM53117 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53117/GSM53117.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53117-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 29299 + + GSM53118 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Carcinoid tumor with atypical features + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53118/GSM53118.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53118-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Corpus Uteri - 29301 + + GSM53119 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53119/GSM53119.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53119-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Uterus - 29305 + + GSM53120 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53120/GSM53120.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53120-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Ovary - 29308 + + GSM53121 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Have you ever had esophagitis/reflux?: Yes +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Metastatic Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53121/GSM53121.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53121-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 29311 + + GSM53122 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 49 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53122/GSM53122.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53122-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 31838 + + GSM53123 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53123/GSM53123.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53123-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 31848 + + GSM53124 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53124/GSM53124.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53124-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Omentum - 31850 + + GSM53125 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53125/GSM53125.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53125-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Colon - 31852 + + GSM53126 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53126/GSM53126.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53126-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 31869 + + GSM53127 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53127/GSM53127.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53127-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 31873 + + GSM53128 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53128/GSM53128.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53128-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Pelvic Tumor - 31875 + + GSM53129 + RNA + 1 + + Pelvic Tumor + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53129/GSM53129.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53129-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 31887 + + GSM53130 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53130/GSM53130.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53130-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 31893 + + GSM53131 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 37 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53131/GSM53131.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53131-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Rectosigmoid - 31895 + + GSM53132 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53132/GSM53132.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53132-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 31905 + + GSM53133 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53133/GSM53133.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53133-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 31909 + + GSM53134 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53134/GSM53134.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53134-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 3750 + + GSM53135 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53135/GSM53135.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53135-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 3751 + + GSM53136 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53136/GSM53136.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53136-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Bladder - 3753 + + GSM53137 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 1 +Pathological M: X +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53137/GSM53137.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53137-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Soft Tissue of Abdomen - 3754 + + GSM53138 + RNA + 1 + + Soft tissue of Abdomen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bloating +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53138/GSM53138.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53138-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Bladder - 3756 + + GSM53139 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Primary Site: Urinary Bladder +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53139/GSM53139.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53139-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Vaginal Wall - 3758 + + GSM53140 + RNA + 1 + + Vaginal Wall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Retreatment T: 4 +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 4A +Retreatment Grade: X +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53140/GSM53140.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53140-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 3760 + + GSM53141 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53141/GSM53141.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53141-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 3761 + + GSM53142 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53142/GSM53142.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53142-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 3762 + + GSM53143 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53143/GSM53143.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53143-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 3763 + + GSM53144 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Pathological T: 3c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53144/GSM53144.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53144-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Cervix - 3764 + + GSM53145 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Primary Site: Cervix +Histology: Squamous Cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53145/GSM53145.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53145-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 3765 + + GSM53146 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53146/GSM53146.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53146-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 3766 + + GSM53147 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53147/GSM53147.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53147-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 3767 + + GSM53148 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53148/GSM53148.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53148-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 3768 + + GSM53149 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53149/GSM53149.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53149-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 4194 + + GSM53150 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53150/GSM53150.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53150-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 4195 + + GSM53151 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Vaginal bleeding +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53151/GSM53151.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53151-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Prostate - 4196 + + GSM53152 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Prior Therapy: Hormonal Treatment +Presenting Symptoms: Dribbling +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53152/GSM53152.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53152-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 4201 + + GSM53153 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53153/GSM53153.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53153-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 4203 + + GSM53154 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53154/GSM53154.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53154-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 4204 + + GSM53155 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53155/GSM53155.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53155-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 4214 + + GSM53156 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53156/GSM53156.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53156-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ileum - 4215 + + GSM53157 + RNA + 1 + + Ileum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +Primary Site: Ileum +Histology: Malignant carcinoid tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53157/GSM53157.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53157-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Tongue - 4216 + + GSM53158 + RNA + 1 + + Tongue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 1 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Tongue +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53158/GSM53158.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53158-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 4219 + + GSM53159 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53159/GSM53159.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53159-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 4226 + + GSM53160 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53160/GSM53160.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53160-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 4227 + + GSM53161 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53161/GSM53161.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53161-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Prostate - 4337 + + GSM53162 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 165 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53162/GSM53162.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53162-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 4342 + + GSM53163 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53163/GSM53163.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53163-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Uterus - 4344 + + GSM53164 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 44 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53164/GSM53164.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53164-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 4346 + + GSM53165 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53165/GSM53165.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53165-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Omentum - 4347 + + GSM53166 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53166/GSM53166.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53166-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Lung - 4451 + + GSM53167 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53167/GSM53167.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53167-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Rectum - 4610 + + GSM53168 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53168/GSM53168.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53168-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 5150 + + GSM53169 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53169/GSM53169.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53169-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Lung - 5225 + + GSM53170 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53170/GSM53170.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53170-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 5227 + + GSM53171 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53171/GSM53171.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53171-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 5228 + + GSM53172 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 4d +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53172/GSM53172.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53172-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 5230 + + GSM53173 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Pathological T: 3c +Pathological N: 1 +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53173/GSM53173.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53173-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Uterus - 5231 + + GSM53174 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Adenosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53174/GSM53174.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53174-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Omentum - 5232 + + GSM53175 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53175/GSM53175.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53175-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Uterus - 5233 + + GSM53176 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 2a +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53176/GSM53176.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53176-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 5234 + + GSM53177 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: X +Primary Site: Stomach +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53177/GSM53177.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53177-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Colon - 5237 + + GSM53178 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53178/GSM53178.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53178-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Uterus - 5240 + + GSM53179 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53179/GSM53179.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53179-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 5242 + + GSM53180 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Primary Site: Ovary +Histology: Clear cell adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53180/GSM53180.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53180-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Vulva - 5243 + + GSM53181 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Vulva +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53181/GSM53181.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53181-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Renal Pelvis - 5244 + + GSM53182 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Pathological T: 3 +Pathological N: 2 +Pathological M: X +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Renal Pelvis +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53182/GSM53182.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53182-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Small Intestine - 6290 + + GSM53183 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53183/GSM53183.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53183-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 6291 + + GSM53184 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53184/GSM53184.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53184-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 6296 + + GSM53185 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53185/GSM53185.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53185-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 7002 + + GSM53186 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53186/GSM53186.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53186-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 7530 + + GSM53187 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53187/GSM53187.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53187-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Renal Pelvis - 8286 + + GSM53188 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Renal Pelvis +Clinical Question: Histology +Clinical Value: Oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53188/GSM53188.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53188-tbl-1.txt + + + + + + + 2005-07-01 + 2005-07-01 + 2005-07-01 + + +Endometrium - 4349 + + GSM53189 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53189/GSM53189.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53189-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 1005 + + GSM76486 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76486/GSM76486.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76486-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 1039 + + GSM76487 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Pathological T: 1b +Pathological N: 0 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76487/GSM76487.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76487-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 20275 + + GSM76488 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 75 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76488/GSM76488.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76488-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20284 + + GSM76489 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76489/GSM76489.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76489-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 20286 + + GSM76490 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76490/GSM76490.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76490-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20290 + + GSM76491 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76491/GSM76491.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76491-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20291 + + GSM76492 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76492/GSM76492.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76492-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20292 + + GSM76493 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76493/GSM76493.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76493-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Stomach - 20293 + + GSM76494 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Have you ever had esophagitis/reflux?: Yes +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76494/GSM76494.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76494-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20294 + + GSM76495 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76495/GSM76495.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76495-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Urethral Nodule - 20300 + + GSM76496 + RNA + 1 + + Urethral Nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 29 +Prior Therapy: Hormonal Treatment +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76496/GSM76496.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76496-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20301 + + GSM76497 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76497/GSM76497.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76497-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Liver - 20302 + + GSM76498 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Clinical Question: Histology +Clinical Value: Intrahepatic Cholangiocarcinoma +Clinical Question: T +Clinical Value: 1 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 1 +Clinical Question: Grade +Clinical Value: 2 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage During or Following Multimodality Theraphy +Clinical Value: No +Primary Site: Liver + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76498/GSM76498.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76498-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 20303 + + GSM76499 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76499/GSM76499.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76499-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20307 + + GSM76500 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 75 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76500/GSM76500.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76500-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 20310 + + GSM76501 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76501/GSM76501.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76501-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 20311 + + GSM76502 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76502/GSM76502.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76502-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 20313 + + GSM76503 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 4 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76503/GSM76503.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76503-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20315 + + GSM76504 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma, endometrioid and papillary serous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76504/GSM76504.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76504-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Soft Tissue Lt Shoulder/Arm - 20317 + + GSM76505 + RNA + 1 + + Soft Tissue L Upper Arm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Soft Tissue Sarcoma +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76505/GSM76505.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76505-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Duodenum - 20318 + + GSM76506 + RNA + 1 + + Duodenum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Duodenum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76506/GSM76506.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76506-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 20319 + + GSM76507 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 56 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76507/GSM76507.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76507-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 20320 + + GSM76508 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 55 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76508/GSM76508.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76508-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20323 + + GSM76509 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76509/GSM76509.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76509-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20325 + + GSM76510 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76510/GSM76510.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76510-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20326 + + GSM76511 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76511/GSM76511.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76511-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 20327 + + GSM76512 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Retreatment T: 4 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76512/GSM76512.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76512-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Uterine/Bladder Tumor - 20328 + + GSM76513 + RNA + 1 + + Uterine/Bladder Tumor + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 4 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 4A +Retreatment Grade: 3 +Primary Site: Uterine/Bladder Tumor +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76513/GSM76513.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76513-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20459 + + GSM76514 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76514/GSM76514.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76514-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 20463 + + GSM76515 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76515/GSM76515.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76515-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 20464 + + GSM76516 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76516/GSM76516.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76516-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 21633 + + GSM76517 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76517/GSM76517.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76517-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 21634 + + GSM76518 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76518/GSM76518.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76518-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21637 + + GSM76519 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76519/GSM76519.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76519-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21638 + + GSM76520 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 75 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76520/GSM76520.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76520-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 21650 + + GSM76521 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 31-35 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76521/GSM76521.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76521-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21651 + + GSM76522 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76522/GSM76522.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76522-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Soft tissue of shoulder - 21655 + + GSM76523 + RNA + 1 + + Soft tissue of shoulder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Primary Site: Melanoma of Skin +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76523/GSM76523.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76523-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21659 + + GSM76524 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76524/GSM76524.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76524-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 21750 + + GSM76525 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Mixed endometrioid and serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76525/GSM76525.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76525-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21751 + + GSM76526 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76526/GSM76526.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76526-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 21752 + + GSM76527 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76527/GSM76527.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76527-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 21753 + + GSM76528 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 1b +Pathological N: 0(i-) +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76528/GSM76528.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76528-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21754 + + GSM76529 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76529/GSM76529.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76529-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21755 + + GSM76530 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 90-100 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76530/GSM76530.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76530-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21756 + + GSM76531 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Colloid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76531/GSM76531.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76531-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Urinary Bladder - 21757 + + GSM76532 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Primary Site: Urinary Bladder +Histology: Papillary Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76532/GSM76532.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76532-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 21758 + + GSM76533 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76533/GSM76533.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76533-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ureterovesicle junction - 21759 + + GSM76534 + RNA + 1 + + Ureterovesicle junction + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Ureterovesicle junction +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76534/GSM76534.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76534-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Uterus - 21760 + + GSM76535 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76535/GSM76535.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76535-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Uterus - 21762 + + GSM76536 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76536/GSM76536.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76536-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21763 + + GSM76537 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76537/GSM76537.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76537-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 21764 + + GSM76538 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76538/GSM76538.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76538-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21765 + + GSM76539 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76539/GSM76539.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76539-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21766 + + GSM76540 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76540/GSM76540.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76540-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Vulva - 21767 + + GSM76541 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Basal Cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76541/GSM76541.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76541-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21771 + + GSM76542 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76542/GSM76542.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76542-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 21772 + + GSM76543 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: X +Clinical M: 1 +Clinical Metastatic Sites: Osseous +Clinical Stage: 4 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76543/GSM76543.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76543-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 21773 + + GSM76544 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76544/GSM76544.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76544-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 21949 + + GSM76545 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76545/GSM76545.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76545-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Rectosigmoid - 21951 + + GSM76546 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76546/GSM76546.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76546-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21955 + + GSM76547 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 3c +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Malignant granulosa cell tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76547/GSM76547.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76547-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21957 + + GSM76548 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76548/GSM76548.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76548-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Thyroid - 21958 + + GSM76549 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Primary Site: Thyroid +Histology: Papillary carcinoma, tall cell variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76549/GSM76549.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76549-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Appendix - 22206 + + GSM76550 + RNA + 1 + + Appendix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Number of Years Until Relapse: None +Number of years in which a mammogram was obtained?: None +Number of years of use? (Oral contraceptives): None +Hormonal therapy (# of Years)?: None +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Appendix +Histology: Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76550/GSM76550.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76550-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 28971 + + GSM76551 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76551/GSM76551.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76551-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31570 + + GSM76552 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Mammogram calcifications?: Yes +Retreatment T: 2 +Retreatment N: 0(i-) +Retreatment Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76552/GSM76552.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76552-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 31573 + + GSM76553 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Hesitancy +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76553/GSM76553.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76553-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 31574 + + GSM76554 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76554/GSM76554.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76554-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 31575 + + GSM76555 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76555/GSM76555.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76555-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31577 + + GSM76556 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76556/GSM76556.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76556-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Parotid Gland - 31580 + + GSM76557 + RNA + 1 + + Parotid Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Difficulties in swallowing +Presenting Symptoms: Voice changes +Pathological Question: Histology +Pathological Value: Keratinizing Squamous Cell Carcinoma +Pathological Question: T +Pathological Value: 4b +Pathological Question: N +Pathological Value: 2b +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 4B +Pathological Question: Grade +Pathological Value: 2 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Theraphy +Pathological Value: No +Primary Site: Parotid Gland + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76557/GSM76557.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76557-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 31581 + + GSM76558 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical Grade: 4 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76558/GSM76558.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76558-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Renal Pelvis - 31585 + + GSM76559 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Primary Site: Renal Pelvis +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76559/GSM76559.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76559-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31586 + + GSM76560 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76560/GSM76560.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76560-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31588 + + GSM76561 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76561/GSM76561.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76561-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Stomach - 31589 + + GSM76562 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever had esophagitis/reflux?: Yes +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76562/GSM76562.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76562-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31593 + + GSM76563 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76563/GSM76563.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76563-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31883 + + GSM76564 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76564/GSM76564.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76564-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Rectosigmoid - 33791 + + GSM76565 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Fallopian Tube +Histology: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76565/GSM76565.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76565-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 33792 + + GSM76566 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76566/GSM76566.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76566-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 33793 + + GSM76567 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76567/GSM76567.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76567-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 33794 + + GSM76568 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76568/GSM76568.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76568-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Pelvic mass - 33795 + + GSM76569 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76569/GSM76569.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76569-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 33798 + + GSM76570 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76570/GSM76570.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76570-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Rectum - 36310 + + GSM76571 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76571/GSM76571.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76571-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 36311 + + GSM76572 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: X +Retreatment N: X +Retreatment M: 1b +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Primary Site: Melanoma of Skin +Histology: Metastatic Spindle cell melanoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76572/GSM76572.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76572-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 36314 + + GSM76573 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76573/GSM76573.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76573-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 36318 + + GSM76574 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76574/GSM76574.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76574-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Rectum - 36320 + + GSM76575 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76575/GSM76575.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76575-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 36327 + + GSM76576 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76576/GSM76576.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76576-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 36328 + + GSM76577 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76577/GSM76577.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76577-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Corpus Uteri - 3759 + + GSM76578 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Corpus Uteri +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76578/GSM76578.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76578-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Renal Pelvis - 38211 + + GSM76579 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 56 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Renal Pelvis +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76579/GSM76579.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76579-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 38213 + + GSM76580 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 40 +Clinical T: 1b +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76580/GSM76580.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76580-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 4191 + + GSM76581 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal mass +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76581/GSM76581.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76581-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 4222 + + GSM76582 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0(i-) +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76582/GSM76582.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76582-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 4333 + + GSM76583 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76583/GSM76583.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76583-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Peritoneum - 4439 + + GSM76584 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Peritoneum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76584/GSM76584.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76584-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 4449 + + GSM76585 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 70 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76585/GSM76585.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76585-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 4450 + + GSM76586 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 36-40 +Pathological T: 1c +Pathological N: 0(i-) +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76586/GSM76586.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76586-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 4455 + + GSM76587 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76587/GSM76587.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76587-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Brain - 4457 + + GSM76588 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 100 +Presenting Symptoms: Seizures +Pathological Question: Histology +Pathological Value: Astrocytoma +Pathological Question: Grade +Pathological Value: WHO Grade III +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme +Primary Site: Brain + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76588/GSM76588.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76588-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 45125 + + GSM76590 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76590/GSM76590.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76590-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 45127 + + GSM76591 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Pathological T: 3b +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76591/GSM76591.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76591-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 4910 + + GSM76592 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 1c +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76592/GSM76592.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76592-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 4914 + + GSM76593 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 76 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76593/GSM76593.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76593-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 5131 + + GSM76594 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Large cell neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76594/GSM76594.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76594-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 5132 + + GSM76595 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Pathological T: 2 +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76595/GSM76595.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76595-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 5229 + + GSM76596 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76596/GSM76596.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76596-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Pelvic Mass - 5236 + + GSM76597 + RNA + 1 + + Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76597/GSM76597.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76597-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 53951 + + GSM76598 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76598/GSM76598.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76598-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 53954 + + GSM76599 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76599/GSM76599.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76599-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ureter - 53955 + + GSM76600 + RNA + 1 + + Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Ureter +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76600/GSM76600.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76600-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Ovary - 53957 + + GSM76601 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Primary Site: Ovary +Histology: Malignant mixed muellerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76601/GSM76601.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76601-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 53960 + + GSM76602 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76602/GSM76602.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76602-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 53962 + + GSM76603 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76603/GSM76603.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76603-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Ovary - 53963 + + GSM76604 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76604/GSM76604.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76604-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 54070 + + GSM76605 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76605/GSM76605.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76605-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 54071 + + GSM76606 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76606/GSM76606.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76606-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 54077 + + GSM76607 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76607/GSM76607.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76607-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 54078 + + GSM76608 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76608/GSM76608.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76608-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Cervix - 58990 + + GSM76609 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Primary Site: Cervix Uteri +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76609/GSM76609.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76609-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 58991 + + GSM76610 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76610/GSM76610.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76610-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 58992 + + GSM76611 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76611/GSM76611.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76611-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Thyroid - 58999 + + GSM76612 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 63 +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76612/GSM76612.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76612-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 59000 + + GSM76613 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76613/GSM76613.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76613-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Cervix - 59002 + + GSM76614 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76614/GSM76614.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76614-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 59003 + + GSM76615 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: D +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76615/GSM76615.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76615-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 6292 + + GSM76616 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76616/GSM76616.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76616-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 6293 + + GSM76617 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76617/GSM76617.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76617-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 6295 + + GSM76618 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76618/GSM76618.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76618-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 6300 + + GSM76619 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Pathological T: 2 +Pathological N: 2a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76619/GSM76619.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76619-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Bone & Cartilage - 6304 + + GSM76620 + RNA + 1 + + Bone & Cartilage + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological Question: Histology +Pathological Value: Chondrosarcoma +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: IIB +Pathological Question: Grade +Pathological Value: 4 +Pathological Question: Stage During or Following Multimodality Theraphy +Pathological Value: Yes +Pathological Question: Multiple Tumors +Pathological Value: No +Primary Site: Bone & Cartilage + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76620/GSM76620.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76620-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Lung - 6305 + + GSM76621 + RNA + 1 + + Left Lower Lobe Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Lung +Histology: Metastatic Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76621/GSM76621.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76621-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Brain - 6312 + + GSM76622 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Brain +Retreatment Stage: 4 +Retreatment Grade: 1 +Primary Site: Lung +Histology: Metastatic Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76622/GSM76622.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76622-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 6515 + + GSM76623 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76623/GSM76623.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76623-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Vagina - 6517 + + GSM76624 + RNA + 1 + + Vagina + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 75 +Clinical Question: Histology +Clinical Value: Adenocarcinoma, mixed epithelial type (papillary serous and clear cell) +Clinical Question: Grade +Clinical Value: 3 +Primary Site: Vagina + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76624/GSM76624.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76624-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Abdominal wall mass - 6519 + + GSM76625 + RNA + 1 + + Abdominal wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 4 +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Rectum +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76625/GSM76625.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76625-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 6891 + + GSM76626 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 4 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76626/GSM76626.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76626-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 6894 + + GSM76627 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76627/GSM76627.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76627-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 6898 + + GSM76628 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76628/GSM76628.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76628-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 6910 + + GSM76629 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76629/GSM76629.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76629-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 6991 + + GSM76630 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 1 +Pathological N: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76630/GSM76630.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76630-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Head of Pancreas - 7000 + + GSM76631 + RNA + 1 + + Head of Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Head of Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76631/GSM76631.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76631-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 7005 + + GSM76632 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76632/GSM76632.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76632-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 7008 + + GSM76633 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Carcinosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76633/GSM76633.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76633-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Corpus Uteri - 7230 + + GSM76634 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Histology +Clinical Value: High Grade Sarcoma with focal heterologous elements +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme +Primary Site: Myometrium + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76634/GSM76634.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76634-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 7231 + + GSM76635 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76635/GSM76635.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76635-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 7232 + + GSM76636 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76636/GSM76636.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76636-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 7233 + + GSM76637 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Other +Ethnic Background: Eastern Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Pathological T: 3 +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76637/GSM76637.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76637-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 78397 + + GSM76638 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76638/GSM76638.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76638-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 78403 + + GSM76639 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76639/GSM76639.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76639-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 8050 + + GSM76640 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Pathological T: 2c +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76640/GSM76640.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76640-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Retroperitoneum - 8051 + + GSM76641 + RNA + 1 + + Retroperitoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76641/GSM76641.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76641-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Soft Tissue Abdominal Wall - 8057 + + GSM76642 + RNA + 1 + + Soft Tissue Abdominal Wall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Primary Site: Soft Tissue Sarcoma +Histology: Myxoid liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76642/GSM76642.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76642-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Lymph node - 8058 + + GSM76643 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Metastatic Mixed adenocarcinoma and small cell neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76643/GSM76643.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76643-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Liver - 8059 + + GSM76644 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological Question: Histology +Pathological Value: Hepatocellular Carcinoma +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Metastatic Sites +Pathological Value: None +Pathological Question: Stage +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Theraphy +Pathological Value: No +Primary Site: Liver + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76644/GSM76644.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76644-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 8060 + + GSM76645 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4B +Retreatment Grade: 3 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76645/GSM76645.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76645-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 8061 + + GSM76646 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76646/GSM76646.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76646-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 8067 + + GSM76647 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Workplace or household smokers?: No +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Kidney +Histology: Metastatic Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76647/GSM76647.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76647-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 89224 + + GSM76648 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76648/GSM76648.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76648-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 89227 + + GSM76649 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 90 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76649/GSM76649.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76649-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 1007 + + GSM88945 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88945/GSM88945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88945-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Liver - 1010 + + GSM88946 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: X +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88946/GSM88946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88946-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 101103 + + GSM88947 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 37 +Clinical T: 3a +Clinical N: 0 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88947/GSM88947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88947-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +L pelvic sidewall - 101104 + + GSM88948 + RNA + 1 + + L pelvic sidewall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88948/GSM88948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88948-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101106 + + GSM88949 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 39 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88949/GSM88949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88949-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101107 + + GSM88950 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88950/GSM88950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88950-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Retroperitoneal Mass - 101108 + + GSM88951 + RNA + 1 + + Retroperitoneal Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Grade: 1 +Primary Site: Soft Tissue Sarcoma +Histology: Liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88951/GSM88951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88951-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 101110 + + GSM88952 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1a +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88952/GSM88952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88952-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101111 + + GSM88953 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Asian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88953/GSM88953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88953-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Supraclavicular Lymph Node - 101112 + + GSM88954 + RNA + 1 + + Supraclavicular Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 1 +Retreatment M: X +Retreatment Grade: 3 +Primary Site: Pharynx +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88954/GSM88954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88954-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101113 + + GSM88955 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: SOB +Pathological T: 2 +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88955/GSM88955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88955-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 101120 + + GSM88956 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Vaginal bleeding +Pathological Grade: 3 +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88956/GSM88956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88956-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Omentum - 101122 + + GSM88957 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3c +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88957/GSM88957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88957-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Retroperitoneal Mass - 101125 + + GSM88958 + RNA + 1 + + Retroperitoneal Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Radiation +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Sarcoma +Histology: Spindle cell sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88958/GSM88958.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88958-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101138 + + GSM88959 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88959/GSM88959.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88959-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 101139 + + GSM88960 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 3a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88960/GSM88960.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88960-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Renal Pelvis - 101140 + + GSM88961 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88961/GSM88961.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88961-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101142 + + GSM88962 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88962/GSM88962.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88962-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 101185 + + GSM88963 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88963/GSM88963.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88963-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 101187 + + GSM88964 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 0 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Mixed type renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88964/GSM88964.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88964-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 101190 + + GSM88965 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Histology +Retreatment Value: Papillary serous adenocarcinoma +Retreatment Question: T +Retreatment Value: X +Retreatment Question: N +Retreatment Value: X +Retreatment Question: M +Retreatment Value: 1 +Retreatment Question: Stage +Retreatment Value: IV +Retreatment Question: Grade +Retreatment Value: 3 +Primary Site: Peritoneum + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88965/GSM88965.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88965-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 101194 + + GSM88966 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Pathological T: 2a +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88966/GSM88966.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88966-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +L axillary lymph node - 1012 + + GSM88967 + RNA + 1 + + L axillary lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Cancer discovered by digital exam?: No +Pathological T: X +Pathological N: X +Pathological M: 1a +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Prostate +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88967/GSM88967.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88967-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 1021 + + GSM88968 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88968/GSM88968.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88968-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 1024 + + GSM88969 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 4d +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88969/GSM88969.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88969-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 104437 + + GSM88970 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88970/GSM88970.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88970-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 1047 + + GSM88971 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2B +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88971/GSM88971.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88971-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Parietal Pleura - 112863 + + GSM88972 + RNA + 1 + + Parietal Pleura + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pleura +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment ER: Positive +Retreatment PR: Positive +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88972/GSM88972.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88972-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 112866 + + GSM88973 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88973/GSM88973.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88973-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 112867 + + GSM88974 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3a +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88974/GSM88974.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88974-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Uterus - 112869 + + GSM88975 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Primary Site: Endometrium +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88975/GSM88975.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88975-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 1291 + + GSM88976 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88976/GSM88976.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88976-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Prostate - 1295 + + GSM88977 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Hesitancy +Presenting Symptoms: Nocturia +Presenting Symptoms: Urgency +PSA: Normal +Cancer discovered by digital exam?: Yes +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88977/GSM88977.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88977-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 1301 + + GSM88978 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 23 +Pathological T: 1c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: X +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88978/GSM88978.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88978-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 1305 + + GSM88979 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 29 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 26-30 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88979/GSM88979.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88979-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 20271 + + GSM88980 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 4a +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88980/GSM88980.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88980-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 20272 + + GSM88981 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 79 +Presenting Symptoms: Hemoptysis +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88981/GSM88981.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88981-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 20279 + + GSM88982 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Other +Ethnic Background: Asian Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88982/GSM88982.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88982-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2007-10-09 + + +Lung - 20283 + + GSM88983 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Lung +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88983/GSM88983.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88983-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 20285 + + GSM88984 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 47 +Presenting Symptoms: Vaginal bleeding +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88984/GSM88984.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88984-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 20298 + + GSM88985 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88985/GSM88985.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88985-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 20314 + + GSM88986 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1b +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88986/GSM88986.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88986-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 20450 + + GSM88987 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88987/GSM88987.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88987-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 20458 + + GSM88988 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 2a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88988/GSM88988.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88988-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 20461 + + GSM88989 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 86 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88989/GSM88989.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88989-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 21631 + + GSM88990 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 31-35 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88990/GSM88990.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88990-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 21636 + + GSM88991 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88991/GSM88991.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88991-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 21981 + + GSM88992 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Abdominal pain +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88992/GSM88992.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88992-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Bladder - 2315 + + GSM88993 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Relapse Since Primary Treatment: No +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88993/GSM88993.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88993-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 2318 + + GSM88994 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88994/GSM88994.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88994-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 2325 + + GSM88995 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88995/GSM88995.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88995-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 2327 + + GSM88996 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Mammogram: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88996/GSM88996.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88996-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 31579 + + GSM88997 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88997/GSM88997.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88997-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Thyroid - 31583 + + GSM88998 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Multiple Tumours: Yes +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88998/GSM88998.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88998-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 31587 + + GSM88999 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88999/GSM88999.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88999-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 31592 + + GSM89000 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89000/GSM89000.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89000-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 33797 + + GSM89001 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Screening studies performed?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89001/GSM89001.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89001-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 34380 + + GSM89002 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89002/GSM89002.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89002-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36312 + + GSM89003 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89003/GSM89003.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89003-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 36315 + + GSM89004 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89004/GSM89004.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89004-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36321 + + GSM89005 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89005/GSM89005.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89005-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36323 + + GSM89006 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89006/GSM89006.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89006-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 36324 + + GSM89007 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89007/GSM89007.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89007-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36325 + + GSM89008 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 29 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Metaplastic squamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89008/GSM89008.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89008-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36329 + + GSM89009 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Invasive ductal carcinoma, mucinous type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89009/GSM89009.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89009-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 38218 + + GSM89010 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89010/GSM89010.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89010-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4193 + + GSM89011 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89011/GSM89011.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89011-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 4200 + + GSM89012 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89012/GSM89012.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89012-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 4210 + + GSM89013 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89013/GSM89013.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89013-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4211 + + GSM89014 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89014/GSM89014.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89014-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4212 + + GSM89015 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89015/GSM89015.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89015-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4225 + + GSM89016 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89016/GSM89016.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89016-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Prostate - 4330 + + GSM89017 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +PSA: Elevated +# of years PSA Tested?: 0-5 +Pathological T: 3b +Pathological N: 0 +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89017/GSM89017.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89017-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4331 + + GSM89018 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89018/GSM89018.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89018-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4334 + + GSM89019 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89019/GSM89019.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89019-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 4338 + + GSM89020 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89020/GSM89020.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89020-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4340 + + GSM89021 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89021/GSM89021.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89021-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 45121 + + GSM89022 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89022/GSM89022.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89022-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 45122 + + GSM89023 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 240 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89023/GSM89023.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89023-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 45123 + + GSM89024 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89024/GSM89024.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89024-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 45126 + + GSM89025 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89025/GSM89025.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89025-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 45129 + + GSM89026 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89026/GSM89026.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89026-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Iliac bone & soft tissue - 53953 + + GSM89027 + RNA + 1 + + Iliac bone & soft tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological Question: Histology +Pathological Value: Dedifferentiated chondrosarcoma +Primary Site: Iliac bone & soft tissue + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89027/GSM89027.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89027-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Omentum or Pelvic Mass - 53958 + + GSM89028 + RNA + 1 + + Omentum or Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89028/GSM89028.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89028-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 53961 + + GSM89029 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89029/GSM89029.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89029-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Liver - 54073 + + GSM89030 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89030/GSM89030.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89030-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Stomach - 54074 + + GSM89031 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Histology +Clinical Value: Gastrointestinal stromal tumor +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme +Primary Site: Stomach + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89031/GSM89031.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89031-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Thyroid - 54075 + + GSM89032 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 4b +Pathological N: 1a +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4C +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89032/GSM89032.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89032-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +R chest wall mass - 54076 + + GSM89033 + RNA + 1 + + R chest wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Multiple Tumours: No +Primary Site: Soft Tissue Sarcoma of R axilla +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89033/GSM89033.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89033-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 55695 + + GSM89034 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1b +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89034/GSM89034.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89034-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Abdominal-pelvic mass - 58993 + + GSM89035 + RNA + 1 + + Abdominal-pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Histology +Clinical Value: Carcinoma, NOS +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Unknown + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89035/GSM89035.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89035-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 58994 + + GSM89036 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89036/GSM89036.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89036-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 58996 + + GSM89037 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89037/GSM89037.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89037-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Thyroid - 58997 + + GSM89038 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89038/GSM89038.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89038-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Small intestine - 58998 + + GSM89039 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 4 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 4A +Retreatment Grade: 3 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89039/GSM89039.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89039-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 59005 + + GSM89040 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Diagnosis made by: Colonoscopy +Clinical T: 3 +Clinical N: 2 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89040/GSM89040.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89040-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Parotid Gland - 59006 + + GSM89041 + RNA + 1 + + Parotid Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Skin of Lt Temple +Histology: Metastatic Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89041/GSM89041.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89041-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endocervix - 59007 + + GSM89042 + RNA + 1 + + Endocervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 70 +Pathological T: 1b1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89042/GSM89042.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89042-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Thyroid - 59008 + + GSM89043 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2 +Pathological N: 0 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, oncocytic variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89043/GSM89043.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89043-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 59009 + + GSM89044 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89044/GSM89044.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89044-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Pancreas - 6210 + + GSM89045 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89045/GSM89045.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89045-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 6308 + + GSM89046 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89046/GSM89046.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89046-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 6897 + + GSM89047 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89047/GSM89047.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89047-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Urinary Bladder - 6992 + + GSM89048 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 48 +Clinical T: 2a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89048/GSM89048.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89048-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 6994 + + GSM89049 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89049/GSM89049.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89049-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Cervix - 6996 + + GSM89050 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1b1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89050/GSM89050.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89050-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Pelvic Mass - 6998 + + GSM89051 + RNA + 1 + + Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3B +Retreatment Grade: 2 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89051/GSM89051.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89051-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 6999 + + GSM89052 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89052/GSM89052.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89052-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 7003 + + GSM89053 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89053/GSM89053.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89053-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Liver - 7006 + + GSM89054 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89054/GSM89054.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89054-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 77736 + + GSM89055 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 240 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89055/GSM89055.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89055-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Dermal and subcutaneous fat and lymph nodes from neck dissection - 78390 + + GSM89056 + RNA + 1 + + Dermal and subcutaneous fat and lymph nodes from neck dissection + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 2b +Retreatment M: X +Retreatment Grade: 3 +Primary Site: Salivary Gland +Histology: Carcinoma ex-pleomorphic adenoma (malignant mixed tumor) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89056/GSM89056.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89056-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 78391 + + GSM89057 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Signet ring cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89057/GSM89057.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89057-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78392 + + GSM89058 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89058/GSM89058.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89058-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Testis - 78394 + + GSM89059 + RNA + 1 + + Testis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 98 +Presenting Symptoms: Lymphadenopathy +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Pathological Question: Histology +Pathological Value: Malignant Lymphoma,, Diffuse Large B-Cell Type +Pathological Question: Stage +Pathological Value: I E +Pathological Question: Symptoms +Pathological Value: A +Primary Site: Testis + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89059/GSM89059.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89059-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 78395 + + GSM89060 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89060/GSM89060.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89060-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 78398 + + GSM89061 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89061/GSM89061.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89061-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 78400 + + GSM89062 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89062/GSM89062.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89062-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78404 + + GSM89063 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89063/GSM89063.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89063-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78405 + + GSM89064 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89064/GSM89064.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89064-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78406 + + GSM89065 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Adenocarcinoma, clear cell type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89065/GSM89065.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89065-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78409 + + GSM89066 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89066/GSM89066.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89066-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 8043 + + GSM89067 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3b +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89067/GSM89067.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89067-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 8044 + + GSM89068 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89068/GSM89068.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89068-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 8046 + + GSM89069 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89069/GSM89069.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89069-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 8047 + + GSM89070 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89070/GSM89070.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89070-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 8049 + + GSM89071 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89071/GSM89071.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89071-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 8068 + + GSM89072 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Papillary adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89072/GSM89072.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89072-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Urinary Bladder - 84152 + + GSM89073 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2a +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2 +Retreatment Grade: 4 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89073/GSM89073.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89073-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 84157 + + GSM89074 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 29 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89074/GSM89074.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89074-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectosigmoid Colon - 84168 + + GSM89075 + RNA + 1 + + Rectosigmoid Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89075/GSM89075.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89075-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 84175 + + GSM89076 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89076/GSM89076.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89076-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 84183 + + GSM89077 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1000 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Retreatment T: 4b +Retreatment N: 1a +Retreatment M: 0 +Retreatment Stage: 3B +Retreatment Grade: 3 +Retreatment Multiple Tumors: No +Retreatment ER: Positive +Retreatment PR: Negative +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Metaplastic Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89077/GSM89077.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89077-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 84190 + + GSM89078 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 50 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89078/GSM89078.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89078-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89114 + + GSM89079 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89079/GSM89079.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89079-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Exocrine Pancreas - 89115 + + GSM89080 + RNA + 1 + + Exocrine Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89080/GSM89080.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89080-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89116 + + GSM89081 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Bloating +Clinical T: 3b +Clinical N: 0 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89081/GSM89081.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89081-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89117 + + GSM89082 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89082/GSM89082.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89082-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Vaginal mass - 89119 + + GSM89083 + RNA + 1 + + Vaginal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Histology +Retreatment Value: Muellerian adenosarcoma with rhabdomyosarcomatous overgrowth +Retreatment Question: Stage +Retreatment Value: No AJCC staging scheme for this site and histology +Primary Site: Corpus Uteri + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89083/GSM89083.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89083-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Soft Tissue Rt Knee - 89152 + + GSM89084 + RNA + 1 + + Soft Tissue Rt Knee + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Radiation +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Rt Knee +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89084/GSM89084.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89084-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Corpus Uteri - 89153 + + GSM89085 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89085/GSM89085.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89085-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 89154 + + GSM89086 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89086/GSM89086.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89086-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 89155 + + GSM89087 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89087/GSM89087.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89087-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Soft Tissue Lt Thigh - 89170 + + GSM89088 + RNA + 1 + + Soft Tissue Lt Thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Radiation +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Lt Thigh +Histology: Myxoid pleomorphic spindle cell sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89088/GSM89088.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89088-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 89171 + + GSM89089 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89089/GSM89089.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89089-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 89184 + + GSM89090 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89090/GSM89090.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89090-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89185 + + GSM89091 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Undifferentiated carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89091/GSM89091.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89091-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Vulvar lesion - 89186 + + GSM89092 + RNA + 1 + + Vulvar lesion + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 4 +Pathological N: 0 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89092/GSM89092.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89092-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89191 + + GSM89093 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89093/GSM89093.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89093-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 89225 + + GSM89094 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 98 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89094/GSM89094.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89094-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 89228 + + GSM89095 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 44 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89095/GSM89095.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89095-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 89229 + + GSM89096 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89096/GSM89096.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89096-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary or Omentum - 89230 + + GSM89097 + RNA + 1 + + Ovary or Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 69 +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89097/GSM89097.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89097-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 89232 + + GSM89098 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89098/GSM89098.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89098-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 89233 + + GSM89099 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1b +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89099/GSM89099.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89099-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectosigmoid - 89234 + + GSM89100 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological Grade: 2 +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89100/GSM89100.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89100-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 89240 + + GSM89101 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Histology +Retreatment Value: Ewing's Sarcoma +Retreatment Question: T +Retreatment Value: X +Retreatment Question: N +Retreatment Value: 1 +Retreatment Question: M +Retreatment Value: 1b +Retreatment Question: Metastatic Sites +Retreatment Value: Lung +Retreatment Question: Stage +Retreatment Value: IVB +Retreatment Question: Grade +Retreatment Value: 4 +Primary Site: Bone + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89101/GSM89101.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89101-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 89263 + + GSM89102 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Pathological T: 4d +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89102/GSM89102.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89102-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 95093 + + GSM89103 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89103/GSM89103.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89103-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 95096 + + GSM89104 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Adenocarcinoma, clear cell type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89104/GSM89104.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89104-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Thyroid - 101092 + + GSM102424 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3 +Pathological N: 0 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102424/GSM102424.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102424-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Endometrium - 101093 + + GSM102425 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102425/GSM102425.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102425-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 101094 + + GSM102426 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma, secretory variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102426/GSM102426.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102426-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Soft Tissue L Thigh - 101095 + + GSM102427 + RNA + 1 + + Soft Tissue L Thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Soft Tissue Sarcoma +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102427/GSM102427.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102427-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101096 + + GSM102428 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102428/GSM102428.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102428-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 101097 + + GSM102429 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102429/GSM102429.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102429-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Uterus - 101099 + + GSM102430 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102430/GSM102430.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102430-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 101116 + + GSM102431 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102431/GSM102431.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102431-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101119 + + GSM102432 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102432/GSM102432.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102432-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101126 + + GSM102433 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 80 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102433/GSM102433.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102433-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Bladder - 101127 + + GSM102434 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 53 +Pathological T: 2a +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102434/GSM102434.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102434-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Prostate - 101128 + + GSM102435 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102435/GSM102435.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102435-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 101129 + + GSM102436 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102436/GSM102436.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102436-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Bladder - 101130 + + GSM102437 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102437/GSM102437.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102437-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101133 + + GSM102438 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102438/GSM102438.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102438-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 101135 + + GSM102439 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 110 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Metaplastic squamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102439/GSM102439.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102439-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 101141 + + GSM102440 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102440/GSM102440.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102440-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 101145 + + GSM102441 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102441/GSM102441.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102441-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Transverse colon nodule - 101146 + + GSM102442 + RNA + 1 + + Transverse colon nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102442/GSM102442.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102442-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101147 + + GSM102443 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 3a +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102443/GSM102443.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102443-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Endometrium - 101148 + + GSM102444 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102444/GSM102444.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102444-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 101150 + + GSM102445 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102445/GSM102445.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102445-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 101151 + + GSM102446 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102446/GSM102446.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102446-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101178 + + GSM102447 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102447/GSM102447.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102447-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Renal Pelvis - 101179 + + GSM102448 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 210 +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis and Ureter +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102448/GSM102448.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102448-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101182 + + GSM102449 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102449/GSM102449.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102449-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101183 + + GSM102450 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102450/GSM102450.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102450-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101184 + + GSM102451 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102451/GSM102451.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102451-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Thyroid - 101186 + + GSM102452 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102452/GSM102452.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102452-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectum - 101188 + + GSM102453 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102453/GSM102453.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102453-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Uterus - 101191 + + GSM102454 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 300 +Pathological T: 1c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Corpus Uteri +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102454/GSM102454.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102454-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101192 + + GSM102455 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102455/GSM102455.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102455-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101193 + + GSM102456 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102456/GSM102456.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102456-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Axillary lymph node - 104341 + + GSM102457 + RNA + 1 + + Axillary lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Retreatment T: 1c +Retreatment N: 2a +Retreatment M: 0 +Retreatment Stage: 3A +Retreatment Grade: X +Retreatment ER: Positive +Retreatment PR: Negative +Retreatment HER/2 Neu: Positive +Primary Site: Breast +Histology: Metastatic Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102457/GSM102457.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102457-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104344 + + GSM102458 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102458/GSM102458.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102458-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104345 + + GSM102459 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102459/GSM102459.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102459-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 104346 + + GSM102460 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102460/GSM102460.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102460-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104347 + + GSM102461 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102461/GSM102461.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102461-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 104350 + + GSM102462 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102462/GSM102462.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102462-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104352 + + GSM102463 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Family History of Cancer?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102463/GSM102463.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102463-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104354 + + GSM102464 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102464/GSM102464.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102464-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104355 + + GSM102465 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102465/GSM102465.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102465-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Cervical Lymph Node - 104366 + + GSM102466 + RNA + 1 + + Cervical Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Fever +Presenting Symptoms: Night sweats +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Pathological Stage: 4 +Pathological Symptoms: B +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102466/GSM102466.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102466-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast dermal mass - 104367 + + GSM102467 + RNA + 1 + + Breast dermal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Fever +Presenting Symptoms: Night sweats +Presenting Symptoms: Weight loss +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 4 +Clinical Symptoms: B +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Anaplastic large cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102467/GSM102467.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102467-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 104438 + + GSM102468 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102468/GSM102468.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102468-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Endometrium - 111073 + + GSM102469 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102469/GSM102469.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102469-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Urinary Bladder - 111075 + + GSM102470 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102470/GSM102470.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102470-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 112884 + + GSM102471 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102471/GSM102471.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102471-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 118653 + + GSM102472 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102472/GSM102472.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102472-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Peritoneum - 118655 + + GSM102473 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bloating +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102473/GSM102473.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102473-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Small Intestine - 118658 + + GSM102474 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Small Intestine +Histology: Adenocarcinoma Arising in Tubular Adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102474/GSM102474.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102474-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Urinary Bladder - 118659 + + GSM102475 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102475/GSM102475.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102475-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Cervix - 118660 + + GSM102476 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Pathological T: 1b1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102476/GSM102476.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102476-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 118661 + + GSM102477 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102477/GSM102477.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102477-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 118662 + + GSM102478 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma, endometrioid and papillary serous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102478/GSM102478.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102478-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 118663 + + GSM102479 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102479/GSM102479.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102479-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Abdominal Wall - 118664 + + GSM102480 + RNA + 1 + + Abdominal Wall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102480/GSM102480.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102480-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Cervix - 118666 + + GSM102481 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102481/GSM102481.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102481-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 118668 + + GSM102482 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0(i+) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102482/GSM102482.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102482-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 118671 + + GSM102483 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site/histology +Primary Site: Ovary +Clinical Question: Histology +Clinical Value: Adult Granulosa Cell Tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102483/GSM102483.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102483-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Small Intestine - 118672 + + GSM102484 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102484/GSM102484.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102484-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 118673 + + GSM102485 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102485/GSM102485.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102485-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectum - 127821 + + GSM102486 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102486/GSM102486.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102486-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 127822 + + GSM102487 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102487/GSM102487.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102487-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Uterus - 129650 + + GSM102488 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102488/GSM102488.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102488-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 129651 + + GSM102489 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102489/GSM102489.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102489-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 129652 + + GSM102490 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Pathological Question: Multiple Tumors +Pathological Value: No +Primary Site: Kidney +Pathological Question: Histology +Pathological Value: Oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102490/GSM102490.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102490-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 129653 + + GSM102491 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102491/GSM102491.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102491-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Endometrium - 129656 + + GSM102492 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102492/GSM102492.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102492-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 129658 + + GSM102493 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3a +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Kidney +Histology: Metastatic Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102493/GSM102493.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102493-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Abdominal wall mass - 129659 + + GSM102494 + RNA + 1 + + Abdominal wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3B +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102494/GSM102494.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102494-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Stomach - 129661 + + GSM102495 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Have you ever had esophagitis/reflux?: Yes +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Adenocarcinoma Diffuse Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102495/GSM102495.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102495-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Soft Tissue of Leg - 129662 + + GSM102496 + RNA + 1 + + Soft Tissue of Leg + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2b +Retreatment N: X +Retreatment Grade: 4 +Primary Site: Soft Tissue Sarcoma +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102496/GSM102496.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102496-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 129690 + + GSM102497 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102497/GSM102497.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102497-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Prostate - 129691 + + GSM102498 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Hesitancy +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102498/GSM102498.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102498-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 129692 + + GSM102499 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102499/GSM102499.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102499-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 129694 + + GSM102500 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102500/GSM102500.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102500-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 129700 + + GSM102501 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102501/GSM102501.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102501-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 129702 + + GSM102502 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Retreatment T: 2 +Retreatment N: 2a +Retreatment M: 0 +Retreatment Stage: 3A +Retreatment Grade: 3 +Retreatment ER: Positive +Retreatment PR: Negative +Retreatment HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102502/GSM102502.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102502-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Liver - 129708 + + GSM102503 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Clinical Question: T +Clinical Value: 4 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3B +Clinical Question: Grade +Clinical Value: 4 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102503/GSM102503.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102503-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 129709 + + GSM102504 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102504/GSM102504.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102504-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 132229 + + GSM102505 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102505/GSM102505.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102505-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 133638 + + GSM102506 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102506/GSM102506.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102506-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 136910 + + GSM102507 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Persistent Cough +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102507/GSM102507.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102507-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rib - 136912 + + GSM102508 + RNA + 1 + + Rib + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Unknown Primary +Pathological Question: Histology +Pathological Value: Metastatic Large cell carcinoma with clear cell features + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102508/GSM102508.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102508-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Uterus - 136913 + + GSM102509 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102509/GSM102509.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102509-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Prostate - 136915 + + GSM102510 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102510/GSM102510.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102510-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Small intestine - 136917 + + GSM102511 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 36-40 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Primary Site: Skin of face +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102511/GSM102511.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102511-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 136919 + + GSM102512 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Adrenals +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102512/GSM102512.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102512-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 138195 + + GSM102513 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102513/GSM102513.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102513-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lymph node R neck - 138196 + + GSM102514 + RNA + 1 + + Lymph node R neck + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3a +Retreatment N: 2b +Retreatment M: 0 +Retreatment Stage: 3B +Primary Site: Skin of face +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102514/GSM102514.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102514-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney and Ureter - 138197 + + GSM102515 + RNA + 1 + + Kidney and Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumours: Yes +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis and Ureter +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102515/GSM102515.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102515-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 138198 + + GSM102516 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102516/GSM102516.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102516-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 138200 + + GSM102517 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma in a Villous Adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102517/GSM102517.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102517-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 138410 + + GSM102518 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102518/GSM102518.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102518-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 138411 + + GSM102519 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102519/GSM102519.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102519-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 138414 + + GSM102520 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102520/GSM102520.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102520-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 144545 + + GSM102521 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102521/GSM102521.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102521-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 149050 + + GSM102522 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102522/GSM102522.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102522-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 149054 + + GSM102523 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 3 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102523/GSM102523.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102523-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 149055 + + GSM102524 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102524/GSM102524.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102524-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 149057 + + GSM102525 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102525/GSM102525.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102525-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 151146 + + GSM102526 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Pathological T: 1b +Pathological N: 0(i-) +Pathological Grade: 1 +Primary Site: Breast +Histology: Adenoid Cystic Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102526/GSM102526.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102526-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Cervix - 151624 + + GSM102527 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102527/GSM102527.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102527-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 151628 + + GSM102528 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 270 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102528/GSM102528.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102528-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 152473 + + GSM102529 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102529/GSM102529.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102529-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 152477 + + GSM102530 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102530/GSM102530.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102530-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Liver - 152480 + + GSM102531 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Digital rectal exam +Retreatment T: 3 +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102531/GSM102531.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102531-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Soft Tissue Thigh - 157425 + + GSM102532 + RNA + 1 + + Soft Tissue Thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Sarcoma +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102532/GSM102532.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102532-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 161432 + + GSM102533 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102533/GSM102533.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102533-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 161433 + + GSM102534 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2B +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102534/GSM102534.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102534-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 161438 + + GSM102535 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102535/GSM102535.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102535-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 161439 + + GSM102536 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102536/GSM102536.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102536-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 161463 + + GSM102537 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102537/GSM102537.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102537-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 161465 + + GSM102538 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Clinical T: 3c +Clinical N: X +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Malignant mixed muellerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102538/GSM102538.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102538-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 161466 + + GSM102539 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102539/GSM102539.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102539-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 161480 + + GSM102540 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102540/GSM102540.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102540-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Esophagus - 180954 + + GSM102541 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3 +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102541/GSM102541.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102541-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 180956 + + GSM102542 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102542/GSM102542.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102542-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Esophagus - 180958 + + GSM102543 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3 +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102543/GSM102543.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102543-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 180960 + + GSM102544 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102544/GSM102544.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102544-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 182732 + + GSM102545 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102545/GSM102545.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102545-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 20329 + + GSM102546 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102546/GSM102546.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102546-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Transverse colon nodule - 20457 + + GSM102547 + RNA + 1 + + Transverse colon nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102547/GSM102547.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102547-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 21976 + + GSM102548 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102548/GSM102548.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102548-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 2320 + + GSM102549 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102549/GSM102549.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102549-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 23942 + + GSM102550 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102550/GSM102550.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102550-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 36322 + + GSM102551 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102551/GSM102551.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102551-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 4445 + + GSM102552 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102552/GSM102552.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102552-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 4453 + + GSM102553 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102553/GSM102553.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102553-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 45120 + + GSM102554 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102554/GSM102554.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102554-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 54079 + + GSM102555 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: Yes +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102555/GSM102555.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102555-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 6310 + + GSM102556 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Retreatment T: 1 +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Lung +Histology: Metastatic Squamous Cell Carcinoma, Non-Keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102556/GSM102556.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102556-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 6314 + + GSM102557 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102557/GSM102557.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102557-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Tongue - 77734 + + GSM102558 + RNA + 1 + + Tongue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2 +Pathological Question: Grade +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Tongue +Pathological Question: Histology +Pathological Value: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102558/GSM102558.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102558-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 78396 + + GSM102559 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102559/GSM102559.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102559-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Thyroid - 78399 + + GSM102560 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 31 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102560/GSM102560.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102560-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 78401 + + GSM102561 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102561/GSM102561.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102561-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 78402 + + GSM102562 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102562/GSM102562.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102562-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 78407 + + GSM102563 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102563/GSM102563.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102563-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 8032 + + GSM102564 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102564/GSM102564.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102564-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 8066 + + GSM102565 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102565/GSM102565.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102565-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84136 + + GSM102566 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102566/GSM102566.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102566-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84138 + + GSM102567 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102567/GSM102567.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102567-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84140 + + GSM102568 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102568/GSM102568.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102568-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84141 + + GSM102569 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102569/GSM102569.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102569-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 84142 + + GSM102570 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1b +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Brain +Clinical Stage: 4 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102570/GSM102570.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102570-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84144 + + GSM102571 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Colloid Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102571/GSM102571.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102571-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84147 + + GSM102572 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102572/GSM102572.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102572-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84148 + + GSM102573 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102573/GSM102573.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102573-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84150 + + GSM102574 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 66 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102574/GSM102574.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102574-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 84153 + + GSM102575 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102575/GSM102575.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102575-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84154 + + GSM102576 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Pathological Question: ER +Pathological Value: Negative +Pathological Question: PR +Pathological Value: Negative +Pathological Question: HER/2 Neu +Pathological Value: Not performed +Primary Site: Breast +Pathological Question: Histology +Pathological Value: Pleomorphic liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102576/GSM102576.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102576-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84158 + + GSM102577 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102577/GSM102577.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102577-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 84159 + + GSM102578 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102578/GSM102578.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102578-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84162 + + GSM102579 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102579/GSM102579.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102579-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84174 + + GSM102580 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Retreatment T: 3 +Retreatment N: 2a +Retreatment M: 0 +Retreatment Stage: 3A +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102580/GSM102580.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102580-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84191 + + GSM102581 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102581/GSM102581.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102581-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 89226 + + GSM102582 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Tubulo-papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102582/GSM102582.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102582-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 89267 + + GSM102583 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102583/GSM102583.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102583-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Cervix Uteri - 101086 + + GSM117576 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 3b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117576/GSM117576.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117576-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectum - 104340 + + GSM117577 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma in adenomatous polyp + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117577/GSM117577.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117577-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 104351 + + GSM117578 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117578/GSM117578.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117578-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 112870 + + GSM117579 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117579/GSM117579.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117579-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 112875 + + GSM117580 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117580/GSM117580.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117580-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 112876 + + GSM117581 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117581/GSM117581.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117581-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 129673 + + GSM117582 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2a +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117582/GSM117582.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117582-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Fallopian tube - 129674 + + GSM117583 + RNA + 1 + + Fallopian tube + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117583/GSM117583.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117583-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 129693 + + GSM117584 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117584/GSM117584.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117584-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 129701 + + GSM117585 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 3 +Pathological N: 2a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117585/GSM117585.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117585-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 133632 + + GSM117586 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117586/GSM117586.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117586-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Brain - 133635 + + GSM117587 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Headaches +Presenting Symptoms: Memory Problems +Clinical Question: Grade +Clinical Value: WHO Grade IV +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Brain +Clinical Question: Histology +Clinical Value: Glioblastoma multiformae + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117587/GSM117587.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117587-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 133647 + + GSM117588 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117588/GSM117588.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117588-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 133648 + + GSM117589 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 49 +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117589/GSM117589.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117589-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 133649 + + GSM117590 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Pathological T: 1c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117590/GSM117590.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117590-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Soft Tissue of Retroperitoneum - 133650 + + GSM117591 + RNA + 1 + + Soft Tissue of Retroperitoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this Site/Histology +Primary Site: Soft Tissue of Retroperitoneum +Clinical Question: Histology +Clinical Value: Cellular Schwannoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117591/GSM117591.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117591-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 133672 + + GSM117592 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: X +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117592/GSM117592.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117592-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 133677 + + GSM117600 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117600/GSM117600.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117600-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 133683 + + GSM117610 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117610/GSM117610.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117610-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Cervix - 135187 + + GSM117626 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117626/GSM117626.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117626-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 138193 + + GSM117629 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 40 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117629/GSM117629.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117629-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 138204 + + GSM117632 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117632/GSM117632.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117632-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 143650 + + GSM117635 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117635/GSM117635.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117635-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 143654 + + GSM117639 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 41-45 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117639/GSM117639.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117639-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 143655 + + GSM117642 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117642/GSM117642.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117642-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 143657 + + GSM117643 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117643/GSM117643.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117643-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 143658 + + GSM117644 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117644/GSM117644.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117644-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Pancreas - 143659 + + GSM117645 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117645/GSM117645.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117645-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Thyroid - 143660 + + GSM117646 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 20-30 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Thyroid +Histology: Follicular adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117646/GSM117646.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117646-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Pancreas - 143661 + + GSM117647 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117647/GSM117647.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117647-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 143662 + + GSM117648 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Fallopian Tube +Histology: Metastatic Papillary serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117648/GSM117648.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117648-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 143664 + + GSM117649 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117649/GSM117649.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117649-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 143666 + + GSM117650 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117650/GSM117650.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117650-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Soft Tissue Left Buttock - 143668 + + GSM117651 + RNA + 1 + + Soft Tissue Left Buttock + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Soft Tissue Sarcoma +Histology: Myxoid liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117651/GSM117651.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117651-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectosigmoid - 144558 + + GSM117652 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117652/GSM117652.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117652-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 144572 + + GSM117653 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117653/GSM117653.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117653-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 144574 + + GSM117655 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis +Histology: Urothelial sarcomatoid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117655/GSM117655.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117655-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 144575 + + GSM117656 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 50 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117656/GSM117656.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117656-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Liver - 144576 + + GSM117657 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Grade +Clinical Value: 4 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage +Clinical Value: Insufficient information for staging - Biopsy only +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117657/GSM117657.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117657-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 144577 + + GSM117658 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117658/GSM117658.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117658-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 149051 + + GSM117659 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 36-40 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117659/GSM117659.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117659-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 149056 + + GSM117660 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117660/GSM117660.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117660-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 151602 + + GSM117661 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 145 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117661/GSM117661.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117661-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 151604 + + GSM117662 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117662/GSM117662.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117662-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 151605 + + GSM117663 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117663/GSM117663.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117663-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 151606 + + GSM117664 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117664/GSM117664.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117664-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Soft Tissue Left Buttock - 151611 + + GSM117665 + RNA + 1 + + Soft Tissue Left Buttock + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 2b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Sacral nerve sheath +Histology: Malignant peripheral nerve sheath tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117665/GSM117665.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117665-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Myometrium - 151612 + + GSM117666 + RNA + 1 + + Myometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this site/histology +Clinical Question: Grade +Clinical Value: 2 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117666/GSM117666.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117666-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 151613 + + GSM117667 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117667/GSM117667.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117667-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 151614 + + GSM117668 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this Site/Histology +Primary Site: Gastrointestinal Tract, NOS +Clinical Question: Histology +Clinical Value: Metastatic Signet ring cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117668/GSM117668.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117668-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Vulva - 151619 + + GSM117669 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117669/GSM117669.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117669-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 151622 + + GSM117670 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Ovary +Pathological Question: Histology +Pathological Value: Borderline tumor of ovary, mixed epithelial type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117670/GSM117670.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117670-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 151623 + + GSM117671 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117671/GSM117671.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117671-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 151627 + + GSM117672 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 40 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117672/GSM117672.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117672-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 152474 + + GSM117673 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117673/GSM117673.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117673-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 152479 + + GSM117674 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117674/GSM117674.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117674-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 152481 + + GSM117675 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117675/GSM117675.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117675-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 152482 + + GSM117676 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117676/GSM117676.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117676-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2007-10-09 + + +Urinary Bladder - 152484 + + GSM117677 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 4 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117677/GSM117677.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117677-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 152485 + + GSM117678 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 16-20 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 2 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 1 +Retreatment Grade: 1 +Retreatment Multiple Tumors: No +Retreatment Stage During or Following Multimodality Therapy: No +Retreatment Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117678/GSM117678.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117678-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 152486 + + GSM117679 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117679/GSM117679.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117679-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 152487 + + GSM117680 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117680/GSM117680.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117680-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 152488 + + GSM117681 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117681/GSM117681.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117681-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 152489 + + GSM117682 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117682/GSM117682.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117682-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectum - 152490 + + GSM117683 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Carcinoma in situ arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117683/GSM117683.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117683-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectosigmoid - 152491 + + GSM117684 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117684/GSM117684.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117684-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161430 + + GSM117685 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117685/GSM117685.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117685-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161435 + + GSM117686 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117686/GSM117686.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117686-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161462 + + GSM117687 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 55 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117687/GSM117687.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117687-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Axillary Lymph Node - 161469 + + GSM117688 + RNA + 1 + + Axillary Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Retreatment T: 1b +Retreatment N: 1a +Retreatment M: 0 +Retreatment Stage: 2A +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Positive +Primary Site: Breast +Histology: Metastatic Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117688/GSM117688.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117688-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 161511 + + GSM117689 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 39 +Presenting Symptoms: SOB +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117689/GSM117689.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117689-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Branchial Cleft Cyst - 161512 + + GSM117690 + RNA + 1 + + Branchial Cleft Cyst + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Head & Neck, NOS +Clinical Question: Histology +Clinical Value: Metastatic Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117690/GSM117690.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117690-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 161513 + + GSM117691 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117691/GSM117691.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117691-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161516 + + GSM117692 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 31-35 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117692/GSM117692.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117692-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Parametrial Implant - 161518 + + GSM117693 + RNA + 1 + + Parametrial Implant + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 3a +Clinical N: X +Clinical M: 1 +Clinical Metastatic Sites: Other +Clinical Stage: 4B +Clinical Grade: 3 +Pathological Grade: 3 +Clinical Multiple Tumors: No +Pathological Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117693/GSM117693.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117693-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 161520 + + GSM117694 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 44 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Adenocarcinoma, clear cell type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117694/GSM117694.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117694-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161521 + + GSM117695 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117695/GSM117695.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117695-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 161524 + + GSM117696 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117696/GSM117696.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117696-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 161527 + + GSM117697 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117697/GSM117697.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117697-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 161529 + + GSM117698 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological Question: Grade +Pathological Value: 2 +Pathological Question: T +Pathological Value: X +Pathological Question: N +Pathological Value: X +Pathological Question: M +Pathological Value: 1 +Pathological Question: Stage +Pathological Value: 4 +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Papillary serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117698/GSM117698.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117698-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2007-10-09 + + +Rectosigmoid - 170822 + + GSM117699 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma in adenomatous polyp + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117699/GSM117699.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117699-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 170823 + + GSM117700 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117700/GSM117700.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117700-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Small Intestine - 170824 + + GSM117701 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Small Intestine +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117701/GSM117701.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117701-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectosigmoid - 170825 + + GSM117702 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117702/GSM117702.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117702-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 170829 + + GSM117703 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117703/GSM117703.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117703-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 170830 + + GSM117704 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117704/GSM117704.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117704-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Thyroid - 170831 + + GSM117705 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117705/GSM117705.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117705-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174050 + + GSM117706 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117706/GSM117706.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117706-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectum - 174051 + + GSM117707 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117707/GSM117707.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117707-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 174052 + + GSM117708 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117708/GSM117708.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117708-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 174054 + + GSM117709 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117709/GSM117709.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117709-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectum - 174057 + + GSM117710 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117710/GSM117710.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117710-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174058 + + GSM117711 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117711/GSM117711.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117711-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 174059 + + GSM117712 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3A +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117712/GSM117712.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117712-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Renal pelvis - 174062 + + GSM117713 + RNA + 1 + + Renal pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis and Ureter +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117713/GSM117713.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117713-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 174063 + + GSM117714 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117714/GSM117714.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117714-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174064 + + GSM117715 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 70 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117715/GSM117715.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117715-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 174931 + + GSM117716 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117716/GSM117716.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117716-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 174934 + + GSM117717 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Question: T +Pathological Value: 3c +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3C +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117717/GSM117717.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117717-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 174936 + + GSM117718 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117718/GSM117718.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117718-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 174937 + + GSM117719 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117719/GSM117719.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117719-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 174938 + + GSM117720 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 47 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117720/GSM117720.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117720-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174939 + + GSM117721 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 1b +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117721/GSM117721.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117721-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 174940 + + GSM117722 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117722/GSM117722.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117722-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Thyroid - 174942 + + GSM117723 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117723/GSM117723.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117723-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 174943 + + GSM117724 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117724/GSM117724.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117724-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174944 + + GSM117725 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Kidney +Pathological Question: Histology +Pathological Value: Solitary fibrous tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117725/GSM117725.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117725-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Prostate - 178552 + + GSM117726 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117726/GSM117726.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117726-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Prostate - 178554 + + GSM117727 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 140 +PSA: Elevated +Cancer discovered by digital exam?: No +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117727/GSM117727.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117727-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 178555 + + GSM117728 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117728/GSM117728.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117728-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 180948 + + GSM117729 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 2a +Clinical N: 0 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117729/GSM117729.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117729-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 180955 + + GSM117730 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117730/GSM117730.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117730-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 182730 + + GSM117731 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Relapse Since Primary Treatment: Yes +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Breast +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117731/GSM117731.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117731-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Soft Tissue of thigh - 184811 + + GSM117732 + RNA + 1 + + Soft Tissue of thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Soft Tissue of thigh +Histology: Myxoid liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117732/GSM117732.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117732-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectosigmoid - 184813 + + GSM117734 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Retreatment Multiple Tumors: No +Retreatment Stage During or Following Multimodality Therapy: Yes +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117734/GSM117734.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117734-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Thyroid - 184814 + + GSM117735 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 10-20 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117735/GSM117735.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117735-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Retroperitoneal Mass - 184818 + + GSM117736 + RNA + 1 + + Retroperitoneal Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Metastatic Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117736/GSM117736.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117736-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 184819 + + GSM117737 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Pathological Question: Grade +Pathological Value: 4 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Pathological Question: Symptoms +Pathological Value: Excessive bleeding +Pathological Question: Symptoms +Pathological Value: Bloating +Primary Site: Endometrium +Pathological Question: Histology +Pathological Value: Undifferentiated endometrial sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117737/GSM117737.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117737-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184820 + + GSM117738 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117738/GSM117738.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117738-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 184821 + + GSM117739 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117739/GSM117739.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117739-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Spleen - 184824 + + GSM117740 + RNA + 1 + + Spleen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this site/histology +Primary Site: Unknown +Clinical Question: Histology +Clinical Value: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117740/GSM117740.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117740-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Prostate - 184830 + + GSM117741 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 66 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117741/GSM117741.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117741-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184833 + + GSM117742 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117742/GSM117742.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117742-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184834 + + GSM117743 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117743/GSM117743.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117743-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 184837 + + GSM117744 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117744/GSM117744.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117744-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 184839 + + GSM117745 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 210 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4d +Pathological N: 3a +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Inflammatory Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117745/GSM117745.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117745-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184841 + + GSM117746 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117746/GSM117746.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117746-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184842 + + GSM117747 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117747/GSM117747.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117747-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 184852 + + GSM117748 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Soft Tissue of back +Histology: Metastatic Malignant fibrous histiocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117748/GSM117748.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117748-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184857 + + GSM117749 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117749/GSM117749.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117749-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184858 + + GSM117750 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 56 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117750/GSM117750.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117750-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184862 + + GSM117751 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117751/GSM117751.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117751-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184863 + + GSM117752 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucin-producing adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117752/GSM117752.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117752-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184864 + + GSM117753 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117753/GSM117753.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117753-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Adrenal Gland - 184865 + + GSM117754 + RNA + 1 + + Adrenal Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site/histology +Primary Site: Adrenal Gland +Clinical Question: Histology +Clinical Value: Oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117754/GSM117754.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117754-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Small Intestine - 184867 + + GSM117755 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical Question: Stage +Clinical Value: No AJCC scheme for this site/histology +Primary Site: Small Intestine +Clinical Question: Histology +Clinical Value: Gastrointestinal Stromal Tumor (GIST) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117755/GSM117755.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117755-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2007-10-09 + + +Lung - 184869 + + GSM117756 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117756/GSM117756.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117756-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 187212 + + GSM117757 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117757/GSM117757.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117757-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 187213 + + GSM117758 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Mammogram: No +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117758/GSM117758.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117758-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 187214 + + GSM117759 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117759/GSM117759.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117759-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 187215 + + GSM117760 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117760/GSM117760.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117760-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 187217 + + GSM117761 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 57 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Cribiform Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117761/GSM117761.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117761-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2007-10-09 + + +Exocrine Pancreas - 187233 + + GSM117762 + RNA + 1 + + Exocrine Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Intraductal papillary mucinous carcinoma, invasive + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117762/GSM117762.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117762-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 187235 + + GSM117763 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: Yes +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117763/GSM117763.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117763-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lymph node - 20277 + + GSM117765 + RNA + 1 + + Lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Dysgerminoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117765/GSM117765.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117765-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 21775 + + GSM117766 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Other +Ethnic Background: Iranian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal and Lobular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117766/GSM117766.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117766-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 21786 + + GSM117767 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117767/GSM117767.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117767-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 21787 + + GSM117768 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117768/GSM117768.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117768-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Brain - 21797 + + GSM117769 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Stage +Retreatment Value: No AJCC Scheme for this Site/Histology +Retreatment Question: Grade +Retreatment Value: 3 (WHO Classification) +Primary Site: Brain +Retreatment Question: Histology +Retreatment Value: Astrocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117769/GSM117769.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117769-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 21802 + + GSM117770 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117770/GSM117770.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117770-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Axillary Lymph Node - 21970 + + GSM117771 + RNA + 1 + + Axillary Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2a +Retreatment N: 1b +Retreatment M: 0 +Retreatment Stage: 3B +Retreatment Multiple Tumors: No +Retreatment Stage During or Following Multimodality Therapy: No +Primary Site: Melanoma of Skin +Histology: Metastatic Superficial spreading melanoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117771/GSM117771.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117771-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 4446 + + GSM117772 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117772/GSM117772.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117772-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 8030 + + GSM117774 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117774/GSM117774.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117774-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 8031 + + GSM117775 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117775/GSM117775.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117775-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Uterus - 84145 + + GSM117776 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117776/GSM117776.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117776-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 84189 + + GSM117777 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117777/GSM117777.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117777-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 112874 + + GSM137895 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137895/GSM137895.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137895-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 112877 + + GSM137896 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1b +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal and Lobular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137896/GSM137896.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137896-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 127823 + + GSM137897 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 159 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Rectosigmoid +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137897/GSM137897.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137897-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 127825 + + GSM137898 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137898/GSM137898.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137898-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Peritoneum - 127829 + + GSM137899 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Small Intestine +Clinical Question: Histology +Clinical Value: Metastatic Gastrointestinal stromal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137899/GSM137899.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137899-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 127837 + + GSM137900 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 75 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: is +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 0 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Intraductal papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137900/GSM137900.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137900-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Thyroid - 127838 + + GSM137901 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Minimally invasive follicular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137901/GSM137901.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137901-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Perihepatic adipose tissue - 133630 + + GSM137902 + RNA + 1 + + Perihepatic adipose tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: T +Retreatment Value: 3 +Retreatment Question: N +Retreatment Value: 1 +Retreatment Question: M +Retreatment Value: 1 +Retreatment Question: Stage +Retreatment Value: 4 +Retreatment Question: Metastatic Sites +Retreatment Value: Other +Retreatment Question: Grade +Retreatment Value: X +Primary Site: Gallbladder +Retreatment Question: Histology +Retreatment Value: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137902/GSM137902.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137902-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 133640 + + GSM137903 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137903/GSM137903.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137903-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 133643 + + GSM137904 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137904/GSM137904.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137904-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 133651 + + GSM137905 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137905/GSM137905.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137905-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 133656 + + GSM137906 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137906/GSM137906.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137906-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 133666 + + GSM137907 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137907/GSM137907.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137907-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 143656 + + GSM137908 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137908/GSM137908.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137908-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 154211 + + GSM137909 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: X +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: Unknown +Pathological Question: Grade +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: Yes +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Liver +Pathological Question: Histology +Pathological Value: Hepatocellular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137909/GSM137909.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137909-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 154213 + + GSM137910 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137910/GSM137910.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137910-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 154215 + + GSM137911 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137911/GSM137911.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137911-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 154216 + + GSM137912 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137912/GSM137912.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137912-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 154219 + + GSM137913 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 100 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137913/GSM137913.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137913-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 1641 + + GSM137914 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137914/GSM137914.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137914-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Omentum - 170804 + + GSM137915 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: T +Clinical Value: 3c +Clinical Question: N +Clinical Value: 1 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3C +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Peritoneum +Clinical Question: Histology +Clinical Value: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137915/GSM137915.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137915-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 170806 + + GSM137916 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137916/GSM137916.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137916-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 170809 + + GSM137917 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological Question: T +Pathological Value: X +Pathological Question: N +Pathological Value: X +Pathological Question: M +Pathological Value: 1 +Pathological Question: Metastatic Sites +Pathological Value: Ovary, omentum +Pathological Question: Stage +Pathological Value: 4 +Pathological Question: Grade +Pathological Value: X +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Exocrine pancreas +Pathological Question: Histology +Pathological Value: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137917/GSM137917.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137917-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 170811 + + GSM137918 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137918/GSM137918.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137918-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Urinary bladder - 170827 + + GSM137919 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137919/GSM137919.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137919-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Pelvic tumor - 170828 + + GSM137920 + RNA + 1 + + Pelvic tumor + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Metastatic Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137920/GSM137920.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137920-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 174056 + + GSM137921 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Rectum +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137921/GSM137921.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137921-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 174060 + + GSM137922 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137922/GSM137922.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137922-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Omentum - 177890 + + GSM137923 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: X +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137923/GSM137923.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137923-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 177892 + + GSM137924 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137924/GSM137924.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137924-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 177893 + + GSM137925 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137925/GSM137925.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137925-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 177894 + + GSM137926 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Nausea +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137926/GSM137926.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137926-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 177895 + + GSM137927 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137927/GSM137927.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137927-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 177896 + + GSM137928 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 48 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137928/GSM137928.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137928-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 178556 + + GSM137929 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3 +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137929/GSM137929.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137929-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Soft tissue of R thigh - 180934 + + GSM137930 + RNA + 1 + + Soft tissue of R thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Primary Site: Soft tissue of R Thigh +Histology: Synovial sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137930/GSM137930.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137930-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 181030 + + GSM137931 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137931/GSM137931.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137931-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Esophagus - 181035 + + GSM137932 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 1 +Pathological Question: Grade +Pathological Value: 2 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137932/GSM137932.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137932-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 184826 + + GSM137933 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137933/GSM137933.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137933-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 184832 + + GSM137934 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137934/GSM137934.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137934-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 184838 + + GSM137935 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Rectum +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137935/GSM137935.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137935-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 184844 + + GSM137936 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137936/GSM137936.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137936-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 184845 + + GSM137937 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137937/GSM137937.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137937-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Exocrine Pancreas - 184850 + + GSM137938 + RNA + 1 + + Exocrine Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137938/GSM137938.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137938-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 184853 + + GSM137939 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 47 +Mammogram: Yes +Oral contraceptives?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137939/GSM137939.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137939-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +GI Tract Connective Tissue - 184856 + + GSM137940 + RNA + 1 + + GI Tract Connective Tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: No +Clinical Question: Stage +Clinical Value: No AJCC staging for benign tumors +Primary Site: Stomach +Clinical Question: Histology +Clinical Value: Gastrointestinal stromal tumor, benign + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137940/GSM137940.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137940-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 184860 + + GSM137941 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137941/GSM137941.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137941-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Colon - 187218 + + GSM137942 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137942/GSM137942.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137942-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 187219 + + GSM137943 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137943/GSM137943.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137943-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 187220 + + GSM137944 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 235 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 3 +Pathological N: 2a +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137944/GSM137944.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137944-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 187222 + + GSM137945 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137945/GSM137945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137945-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 187225 + + GSM137946 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Kidney +Clinical Question: Histology +Clinical Value: Renal oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137946/GSM137946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137946-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 187229 + + GSM137947 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 37 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137947/GSM137947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137947-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 187230 + + GSM137948 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137948/GSM137948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137948-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 187232 + + GSM137949 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137949/GSM137949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137949-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 187234 + + GSM137950 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137950/GSM137950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137950-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Small bowel - 187236 + + GSM137951 + RNA + 1 + + Small bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Lung +Histology: Metastatic Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137951/GSM137951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137951-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Peritoneum - 187237 + + GSM137952 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137952/GSM137952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137952-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Breast - 187238 + + GSM137953 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137953/GSM137953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137953-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 191409 + + GSM137954 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Radiation +Pathological T: 1a +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Kidney +Histology: Collecting duct carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137954/GSM137954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137954-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 191411 + + GSM137955 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137955/GSM137955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137955-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 191412 + + GSM137956 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 52 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137956/GSM137956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137956-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 191413 + + GSM137957 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Ovary +Clinical Question: Histology +Clinical Value: Endometrioid tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137957/GSM137957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137957-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Pancreas - 191414 + + GSM137958 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137958/GSM137958.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137958-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 191415 + + GSM137959 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 107 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137959/GSM137959.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137959-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 191417 + + GSM137960 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137960/GSM137960.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137960-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 191418 + + GSM137961 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 43 +Clinical T: 1b +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137961/GSM137961.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137961-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 191419 + + GSM137962 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Clinical Question: T +Clinical Value: 2 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 2 +Clinical Question: Grade +Clinical Value: 2 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137962/GSM137962.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137962-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 191420 + + GSM137963 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 38 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137963/GSM137963.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137963-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectosigmoid colon - 191423 + + GSM137964 + RNA + 1 + + Rectosigmoid colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Pathological T: 3 +Pathological N: 2 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137964/GSM137964.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137964-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 191424 + + GSM137965 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Pathological T: 2c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137965/GSM137965.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137965-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Parotid gland - 191425 + + GSM137966 + RNA + 1 + + Parotid gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: X +Pathological Question: Stage +Pathological Value: Unknown +Pathological Question: Grade +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Parotid gland +Pathological Question: Histology +Pathological Value: Epithelial-myoepithelial carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137966/GSM137966.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137966-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 191427 + + GSM137967 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Presenting Symptoms: Black tarry stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137967/GSM137967.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137967-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 191429 + + GSM137968 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137968/GSM137968.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137968-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Omentum - 191432 + + GSM137969 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137969/GSM137969.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137969-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Pelvic mass - 191433 + + GSM137970 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2C +Clinical Grade: X +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Sex cord-gonadal stromal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137970/GSM137970.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137970-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Prostate - 193006 + + GSM137971 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +PSA: Elevated +# of years PSA Tested?: 6-10 +Clinical T: 2c +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137971/GSM137971.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137971-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 194730 + + GSM137972 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 2 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137972/GSM137972.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137972-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 195179 + + GSM137973 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137973/GSM137973.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137973-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Small bowel - 195181 + + GSM137974 + RNA + 1 + + Small bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Metastatic Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137974/GSM137974.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137974-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 195182 + + GSM137975 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Hormonal Treatment +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Endometrium +Histology: Malignant Mixed mesodermal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137975/GSM137975.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137975-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Bladder - 195183 + + GSM137976 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 0 +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137976/GSM137976.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137976-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 195186 + + GSM137977 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 51 +Clinical Question: T +Clinical Value: 3a +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Kidney +Clinical Question: Histology +Clinical Value: Malignant renal oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137977/GSM137977.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137977-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 195189 + + GSM137978 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137978/GSM137978.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137978-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 195190 + + GSM137979 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Pathological T: 1c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137979/GSM137979.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137979-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 195195 + + GSM137980 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 48 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137980/GSM137980.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137980-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Sigmoid colon - 195196 + + GSM137981 + RNA + 1 + + Sigmoid colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137981/GSM137981.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137981-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Omentum - 195197 + + GSM137982 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: X +Clinical M: 0 +Clinical Stage: 3C +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137982/GSM137982.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137982-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 195198 + + GSM137983 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137983/GSM137983.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137983-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 195199 + + GSM137984 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137984/GSM137984.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137984-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectosigmoid colon - 199338 + + GSM137985 + RNA + 1 + + Rectosigmoid colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137985/GSM137985.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137985-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199343 + + GSM137986 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137986/GSM137986.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137986-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199344 + + GSM137987 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137987/GSM137987.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137987-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199351 + + GSM137988 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137988/GSM137988.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137988-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199352 + + GSM137989 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137989/GSM137989.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137989-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199355 + + GSM137990 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137990/GSM137990.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137990-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199356 + + GSM137991 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137991/GSM137991.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137991-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199358 + + GSM137992 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137992/GSM137992.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137992-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 199359 + + GSM137993 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137993/GSM137993.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137993-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199360 + + GSM137994 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2A +Clinical Grade: 3 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Clinical ER: Positive +Clinical PR: Positive +Clinical HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137994/GSM137994.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137994-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199362 + + GSM137995 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137995/GSM137995.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137995-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Thoracic spine bone and intervertebral disc - 199363 + + GSM137996 + RNA + 1 + + Thoracic spine bone and intervertebral disc + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Metastatic Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137996/GSM137996.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137996-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon mesentery - 199365 + + GSM137997 + RNA + 1 + + Colon mesentery + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 129 +Prior Therapy: Chemotherapy +Pathological T: 1b +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Pelvic soft tissue +Histology: Metastatic Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137997/GSM137997.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137997-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 199366 + + GSM137998 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Screening studies performed?: Yes +Diagnosis made by: Barium enema +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137998/GSM137998.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137998-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectum - 199374 + + GSM137999 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137999/GSM137999.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137999-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199375 + + GSM138000 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138000/GSM138000.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138000-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 199377 + + GSM138001 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138001/GSM138001.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138001-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Lung - 199378 + + GSM138002 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: X +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138002/GSM138002.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138002-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 199379 + + GSM138003 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138003/GSM138003.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138003-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Superior mediastinal lymph node - 199381 + + GSM138004 + RNA + 1 + + Superior mediastinal lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Voice changes +Pathological T: 1 +Pathological N: 1b +Pathological M: 0 +Pathological Stage: 1 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138004/GSM138004.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138004-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 199382 + + GSM138005 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138005/GSM138005.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138005-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199383 + + GSM138006 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138006/GSM138006.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138006-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 199384 + + GSM138007 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138007/GSM138007.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138007-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199393 + + GSM138008 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 75 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138008/GSM138008.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138008-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 202033 + + GSM138009 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138009/GSM138009.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138009-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Islets of Langerhans - 202044 + + GSM138010 + RNA + 1 + + Islets of Langerhans + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Pathological Question: Grade +Pathological Value: 1 +Primary Site: Islets of Langerhans +Pathological Question: Histology +Pathological Value: Malignant gastrinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138010/GSM138010.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138010-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 205693 + + GSM138011 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 26-30 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2A +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138011/GSM138011.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138011-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 205695 + + GSM138012 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138012/GSM138012.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138012-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Penis - 205699 + + GSM138013 + RNA + 1 + + Penis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: T +Retreatment Value: 3 +Retreatment Question: N +Retreatment Value: X +Retreatment Question: M +Retreatment Value: X +Retreatment Question: Stage +Retreatment Value: Unknown +Retreatment Question: Grade +Retreatment Value: 1 +Primary Site: Penis +Retreatment Question: Histology +Retreatment Value: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138013/GSM138013.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138013-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 207170 + + GSM138014 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138014/GSM138014.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138014-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 209695 + + GSM138015 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138015/GSM138015.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138015-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 209701 + + GSM138016 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138016/GSM138016.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138016-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 209704 + + GSM138017 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138017/GSM138017.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138017-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 209705 + + GSM138018 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138018/GSM138018.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138018-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 209706 + + GSM138019 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138019/GSM138019.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138019-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 209707 + + GSM138020 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138020/GSM138020.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138020-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectosigmoid - 209708 + + GSM138021 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Vomiting +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138021/GSM138021.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138021-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 209716 + + GSM138022 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138022/GSM138022.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138022-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Thyroid - 209719 + + GSM138023 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138023/GSM138023.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138023-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Thyroid - 211391 + + GSM138024 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138024/GSM138024.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138024-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 211393 + + GSM138025 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138025/GSM138025.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138025-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Omentum - 211404 + + GSM138026 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138026/GSM138026.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138026-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215917 + + GSM138027 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Pathological T: 1mic +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Papillary Carcinoma (predominantly micropapillary pattern) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138027/GSM138027.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138027-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215927 + + GSM138028 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138028/GSM138028.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138028-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Soft tissue of hip - 215928 + + GSM138029 + RNA + 1 + + Soft tissue of hip + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Soft tissue of hip +Histology: Undifferentiated sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138029/GSM138029.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138029-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215929 + + GSM138030 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138030/GSM138030.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138030-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215931 + + GSM138031 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Mammogram: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138031/GSM138031.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138031-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215932 + + GSM138032 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138032/GSM138032.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138032-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215933 + + GSM138033 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138033/GSM138033.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138033-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215934 + + GSM138034 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 3a +Clinical N: X +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138034/GSM138034.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138034-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215935 + + GSM138035 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138035/GSM138035.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138035-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215936 + + GSM138036 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138036/GSM138036.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138036-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215937 + + GSM138037 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 27 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138037/GSM138037.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138037-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Prostate - 215940 + + GSM138038 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 56 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138038/GSM138038.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138038-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectosigmoid - 215941 + + GSM138039 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138039/GSM138039.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138039-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Testis - 215943 + + GSM138040 + RNA + 1 + + Testis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Clinical Serum Tumor Markers: S0 +Primary Site: Testis +Histology: Anaplastic seminoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138040/GSM138040.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138040-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215944 + + GSM138041 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138041/GSM138041.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138041-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215946 + + GSM138042 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138042/GSM138042.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138042-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 215948 + + GSM138043 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138043/GSM138043.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138043-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215949 + + GSM138044 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138044/GSM138044.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138044-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215950 + + GSM138045 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138045/GSM138045.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138045-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215952 + + GSM138046 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138046/GSM138046.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138046-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 215953 + + GSM138047 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138047/GSM138047.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138047-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 231850 + + GSM138048 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138048/GSM138048.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138048-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 231855 + + GSM138049 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Retreatment T: 2 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2A +Retreatment Grade: X +Retreatment Multiple Tumors: No +Retreatment ER: Positive +Retreatment PR: Positive +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138049/GSM138049.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138049-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 231866 + + GSM138050 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138050/GSM138050.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138050-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 231868 + + GSM138051 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138051/GSM138051.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138051-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 231874 + + GSM138052 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138052/GSM138052.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138052-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 231875 + + GSM138053 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138053/GSM138053.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138053-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 89262 + + GSM138054 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138054/GSM138054.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138054-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 101144 + + GSM152564 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Hormonal Treatment +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Retreatment T: 2 +Retreatment N: X +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Retreatment ER: Positive +Retreatment PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152564/GSM152564.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152564-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Testis - 101154 + + GSM152565 + RNA + 1 + + Testis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 2B +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Pathological Serum Tumor Markers: S0 +Primary Site: Testis +Histology: Seminoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152565/GSM152565.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152565-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Cervical Lymph Node - 1013 + + GSM152566 + RNA + 1 + + Cervical Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 1 +Clinical Symptoms: A +Primary Site: Lymph Nodes +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152566/GSM152566.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152566-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ureter - 112886 + + GSM152567 + RNA + 1 + + Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Ureter +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152567/GSM152567.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152567-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 1231 + + GSM152568 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152568/GSM152568.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152568-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 1234 + + GSM152569 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: X +Pathological Stage: 3C +Pathological Grade: X +Primary Site: Breast +Histology: Ductal and Lobular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152569/GSM152569.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152569-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 127820 + + GSM152570 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Mammogram: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152570/GSM152570.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152570-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 127826 + + GSM152571 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 49 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152571/GSM152571.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152571-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectosigmoid - 127827 + + GSM152572 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152572/GSM152572.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152572-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 127830 + + GSM152573 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152573/GSM152573.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152573-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 127835 + + GSM152574 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal pain +Pathological Question: Stage +Pathological Value: 3C +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152574/GSM152574.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152574-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 127839 + + GSM152575 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 59 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152575/GSM152575.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152575-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 127841 + + GSM152576 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152576/GSM152576.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152576-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 129660 + + GSM152577 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: X +Pathological M: 0 +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152577/GSM152577.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152577-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 129663 + + GSM152578 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152578/GSM152578.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152578-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 129666 + + GSM152579 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152579/GSM152579.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152579-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 129668 + + GSM152580 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, spindle cell type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152580/GSM152580.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152580-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 129669 + + GSM152581 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152581/GSM152581.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152581-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 129670 + + GSM152582 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152582/GSM152582.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152582-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic mass - 129671 + + GSM152583 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bloating +Pathological Question: T +Pathological Value: 2B +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2B +Pathological Question: Grade +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Ovarian remnant +Pathological Question: Histology +Pathological Value: Papillary endometrioid adenocarcinoma of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152583/GSM152583.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152583-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 133637 + + GSM152584 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Clinical T: X +Clinical N: X +Clinical M: 1 +Clinical Metastatic Sites: Hepatic +Clinical Stage: 4 +Clinical Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152584/GSM152584.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152584-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 133639 + + GSM152585 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 31 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152585/GSM152585.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152585-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic tumor - 143653 + + GSM152586 + RNA + 1 + + Pelvic tumor + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152586/GSM152586.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152586-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Lymph Node - 143663 + + GSM152587 + RNA + 1 + + Lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: X +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152587/GSM152587.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152587-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Lymph Node - 143669 + + GSM152588 + RNA + 1 + + Lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 4 +Retreatment N: 1 +Retreatment M: 0 +Retreatment Stage: 4 +Primary Site: Eye, NOS +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152588/GSM152588.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152588-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 144571 + + GSM152589 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 84 +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152589/GSM152589.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152589-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 151607 + + GSM152590 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Other +Ethnic Background: Unknown +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 50 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 26-30 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152590/GSM152590.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152590-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 151618 + + GSM152591 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152591/GSM152591.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152591-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 151625 + + GSM152592 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152592/GSM152592.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152592-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 152470 + + GSM152593 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Clinical Question: Stage +Clinical Value: No AJCC staging for benign tumors +Primary Site: Kidney +Clinical Question: Histology +Clinical Value: Renal oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152593/GSM152593.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152593-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 154218 + + GSM152594 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152594/GSM152594.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152594-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Stomach - 161522 + + GSM152595 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Have you ever had esophagitis/reflux?: Yes +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Tubular adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152595/GSM152595.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152595-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 161525 + + GSM152596 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2B +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152596/GSM152596.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152596-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 161530 + + GSM152597 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 53 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152597/GSM152597.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152597-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus and cervix - 161533 + + GSM152598 + RNA + 1 + + Uterus and cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 1 +Pathological Question: Metastatic Sites +Pathological Value: Omentum +Pathological Question: Stage +Pathological Value: 4B +Pathological Question: Grade +Pathological Value: 2 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Pathological Question: Symptoms +Primary Site: Overlapping lesion of cervix utri and corpus uteri +Pathological Question: Histology +Pathological Value: Papillary endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152598/GSM152598.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152598-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 161534 + + GSM152599 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152599/GSM152599.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152599-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Small intestine - 174053 + + GSM152600 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152600/GSM152600.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152600-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Stomach (Gastroesophageal junction) - 180941 + + GSM152601 + RNA + 1 + + Stomach (Gastroesophageal junction) + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Have you ever had esophagitis/reflux?: Yes +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152601/GSM152601.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152601-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 180944 + + GSM152602 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152602/GSM152602.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152602-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 180953 + + GSM152603 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152603/GSM152603.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152603-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Hepatic Flexure - 184846 + + GSM152604 + RNA + 1 + + Hepatic Flexure + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152604/GSM152604.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152604-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 184847 + + GSM152605 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Pathological T: is +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Intraductal papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152605/GSM152605.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152605-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 184848 + + GSM152606 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152606/GSM152606.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152606-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 184849 + + GSM152607 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological Question: Stage +Pathological Value: 3C +Pathological Question: Grade +Pathological Value: 3 +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Papillary serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152607/GSM152607.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152607-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 184851 + + GSM152608 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152608/GSM152608.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152608-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 184854 + + GSM152609 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152609/GSM152609.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152609-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 184870 + + GSM152610 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucin-producing adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152610/GSM152610.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152610-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 193010 + + GSM152611 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 39 +Presenting Symptoms: Dribbling +Presenting Symptoms: Urgency +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152611/GSM152611.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152611-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 193015 + + GSM152612 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152612/GSM152612.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152612-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 193020 + + GSM152613 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Screening studies performed?: Yes +Diagnosis made by: Stool blood test (guiac) +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152613/GSM152613.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152613-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 193021 + + GSM152614 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152614/GSM152614.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152614-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193022 + + GSM152615 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152615/GSM152615.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152615-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193024 + + GSM152616 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152616/GSM152616.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152616-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 193030 + + GSM152617 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152617/GSM152617.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152617-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193033 + + GSM152618 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 1c +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Cribiform Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152618/GSM152618.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152618-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Small Bowel - 193034 + + GSM152619 + RNA + 1 + + Small Bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Pathological T: 3 +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: X +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152619/GSM152619.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152619-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193035 + + GSM152620 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 26-30 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152620/GSM152620.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152620-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193036 + + GSM152621 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152621/GSM152621.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152621-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 193038 + + GSM152622 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Hematuria +Presenting Symptoms: Nocturia +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152622/GSM152622.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152622-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 195184 + + GSM152623 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: X +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152623/GSM152623.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152623-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 195188 + + GSM152624 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Weight Loss +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152624/GSM152624.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152624-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Urinary Bladder - 199368 + + GSM152625 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152625/GSM152625.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152625-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 199372 + + GSM152626 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152626/GSM152626.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152626-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 199373 + + GSM152627 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152627/GSM152627.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152627-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Parotid gland - 199380 + + GSM152628 + RNA + 1 + + Parotid gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 2b +Pathological Question: M +Pathological Value: 1 +Pathological Question: Stage +Pathological Value: 4C +Pathological Question: Metastatic Sites +Pathological Value: Superior mediastinal lymph nodes +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Parotid gland +Pathological Question: Histology +Pathological Value: Mucoepidermoid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152628/GSM152628.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152628-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectum - 199386 + + GSM152629 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152629/GSM152629.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152629-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectum - 199387 + + GSM152630 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152630/GSM152630.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152630-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 199388 + + GSM152631 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 53 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152631/GSM152631.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152631-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 199390 + + GSM152632 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152632/GSM152632.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152632-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Thyroid - 199391 + + GSM152633 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 4a +Pathological N: 1a +Pathological M: X +Pathological Stage: 4A +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152633/GSM152633.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152633-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 202030 + + GSM152634 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152634/GSM152634.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152634-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 202031 + + GSM152635 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152635/GSM152635.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152635-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Vulva - 202032 + + GSM152636 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152636/GSM152636.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152636-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 202037 + + GSM152637 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152637/GSM152637.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152637-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 202038 + + GSM152638 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3a +Retreatment N: 0 +Retreatment M: 1 +Retreatment Metastatic Sites: Peritoneum +Retreatment Stage: 4B +Retreatment Grade: 3 +Retreatment Multiple Tumors: No +Primary Site: Endometrium +Histology: Metastatic Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152638/GSM152638.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152638-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 202041 + + GSM152639 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Clinical Stage: 2 +Clinical Symptoms: A +Primary Site: Small intestine +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152639/GSM152639.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152639-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 202042 + + GSM152640 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152640/GSM152640.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152640-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 202043 + + GSM152641 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152641/GSM152641.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152641-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 202046 + + GSM152642 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152642/GSM152642.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152642-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 202048 + + GSM152643 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 34 +Prior Therapy: Surgical +Pathological T: 2b +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152643/GSM152643.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152643-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Endometrium - 205703 + + GSM152644 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152644/GSM152644.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152644-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 205705 + + GSM152645 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152645/GSM152645.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152645-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 207532 + + GSM152646 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal mass +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152646/GSM152646.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152646-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic lymph node - 207533 + + GSM152647 + RNA + 1 + + Pelvic lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical Stage: Unknown +Primary Site: Lymph Nodes +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152647/GSM152647.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152647-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 207536 + + GSM152648 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal pain +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152648/GSM152648.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152648-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 207537 + + GSM152649 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152649/GSM152649.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152649-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 207538 + + GSM152650 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical Question: Stage +Clinical Value: No AJCC staging for benign tumors +Primary Site: Kidney +Clinical Question: Histology +Clinical Value: Angiomyolipoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152650/GSM152650.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152650-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Para aortic tissue - 207539 + + GSM152651 + RNA + 1 + + Para aortic tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Clinical T: 2 +Clinical N: 2 +Clinical M: 1a +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 3B +Clinical Multiple Tumours: Yes +Clinical Staged During or Following Multimodality Therapy: Yes +Clinical Serum Tumor Markers: S2 +Primary Site: Testis +Histology: Mixed germ cell tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152651/GSM152651.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152651-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 209696 + + GSM152652 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152652/GSM152652.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152652-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 209699 + + GSM152653 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152653/GSM152653.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152653-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 209709 + + GSM152654 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152654/GSM152654.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152654-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 209711 + + GSM152655 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Clinical Question: Grade +Clinical Value: 3 +Primary Site: Endometrium +Clinical Question: Histology +Clinical Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152655/GSM152655.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152655-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Testis - 209713 + + GSM152656 + RNA + 1 + + Testis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 5 +Clinical T: 2 +Clinical N: 1 +Clinical M: 0 +Clinical Stage: 2 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Testis +Histology: Mixed germ cell tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152656/GSM152656.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152656-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 209714 + + GSM152657 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Primary Site: Ovary +Histology: Benign serous cystadenoma of borderline malignancy + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152657/GSM152657.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152657-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 209717 + + GSM152658 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152658/GSM152658.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152658-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 209718 + + GSM152659 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152659/GSM152659.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152659-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Endometrium - 209720 + + GSM152660 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 49 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152660/GSM152660.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152660-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 211394 + + GSM152661 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 33 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152661/GSM152661.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152661-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 211395 + + GSM152662 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 2a +Clinical N: 1 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152662/GSM152662.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152662-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Thyroid - 211398 + + GSM152663 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 1 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152663/GSM152663.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152663-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 211400 + + GSM152664 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152664/GSM152664.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152664-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Vulva - 211405 + + GSM152665 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Clinical T: X +Clinical N: 0 +Clinical M: 0 +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152665/GSM152665.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152665-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 211407 + + GSM152666 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152666/GSM152666.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152666-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 211408 + + GSM152667 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152667/GSM152667.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152667-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 211409 + + GSM152668 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 0 +Pathological M: X +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152668/GSM152668.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152668-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 215930 + + GSM152669 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Mammogram: Yes +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152669/GSM152669.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152669-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 219567 + + GSM152670 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152670/GSM152670.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152670-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 219570 + + GSM152671 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Mixed endometrioid and serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152671/GSM152671.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152671-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 219571 + + GSM152672 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Malignant teratoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152672/GSM152672.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152672-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 219573 + + GSM152673 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152673/GSM152673.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152673-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 219574 + + GSM152674 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Endometrium +Histology: Mixed endometrioid and serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152674/GSM152674.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152674-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectum - 219576 + + GSM152675 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Diagnosis made by: Colonoscopy +Clinical T: X +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152675/GSM152675.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152675-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 219581 + + GSM152676 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152676/GSM152676.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152676-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 219582 + + GSM152677 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152677/GSM152677.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152677-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 219586 + + GSM152678 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152678/GSM152678.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152678-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 219590 + + GSM152679 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152679/GSM152679.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152679-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 219597 + + GSM152680 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152680/GSM152680.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152680-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 219599 + + GSM152681 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152681/GSM152681.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152681-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 219600 + + GSM152682 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152682/GSM152682.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152682-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 219604 + + GSM152683 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal mass +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152683/GSM152683.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152683-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 219605 + + GSM152684 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152684/GSM152684.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152684-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 219606 + + GSM152685 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i+) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152685/GSM152685.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152685-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Acetabulum and pelvic soft tissues - 226410 + + GSM152686 + RNA + 1 + + Acetabulum and pelvic soft tissues + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: X +Pathological Question: Stage +Pathological Value: Unknown +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: Yes +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: Yes +Primary Site: Acetabulum +Pathological Question: Histology +Pathological Value: Dedifferentiated chondrosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152686/GSM152686.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152686-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 226413 + + GSM152687 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 38 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152687/GSM152687.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152687-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 226414 + + GSM152688 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152688/GSM152688.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152688-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 226415 + + GSM152689 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152689/GSM152689.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152689-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 226416 + + GSM152690 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152690/GSM152690.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152690-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 226421 + + GSM152691 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 41-45 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152691/GSM152691.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152691-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 226422 + + GSM152692 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 41 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152692/GSM152692.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152692-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 226423 + + GSM152693 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152693/GSM152693.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152693-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 226424 + + GSM152694 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152694/GSM152694.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152694-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 226429 + + GSM152695 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152695/GSM152695.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152695-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 228530 + + GSM152696 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Relapse Since Primary Treatment: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152696/GSM152696.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152696-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +kidney - 228531 + + GSM152697 + RNA + 1 + + kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152697/GSM152697.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152697-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 228533 + + GSM152698 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 200 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 36-40 +Oral contraceptives?: No +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 3a +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152698/GSM152698.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152698-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 228536 + + GSM152699 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152699/GSM152699.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152699-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 228537 + + GSM152700 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152700/GSM152700.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152700-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 228538 + + GSM152701 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152701/GSM152701.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152701-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Jejunum - 228540 + + GSM152702 + RNA + 1 + + Jejunum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Night sweats +Presenting Symptoms: Weight loss +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 1 +Clinical Symptoms: B +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152702/GSM152702.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152702-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectosigmoid - 228542 + + GSM152703 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152703/GSM152703.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152703-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 228544 + + GSM152704 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 71 +Clinical T: 3a +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152704/GSM152704.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152704-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 228546 + + GSM152705 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 80 +Pathological T: 3a +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152705/GSM152705.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152705-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 228549 + + GSM152706 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 80 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Papillary cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152706/GSM152706.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152706-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 231852 + + GSM152707 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Mammogram: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152707/GSM152707.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152707-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 231853 + + GSM152708 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 2 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152708/GSM152708.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152708-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 231863 + + GSM152709 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152709/GSM152709.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152709-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectosigmoid - 231864 + + GSM152710 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152710/GSM152710.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152710-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 231867 + + GSM152711 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152711/GSM152711.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152711-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectum - 231869 + + GSM152712 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152712/GSM152712.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152712-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 231871 + + GSM152713 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152713/GSM152713.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152713-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 231877 + + GSM152714 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152714/GSM152714.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152714-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 231878 + + GSM152715 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152715/GSM152715.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152715-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 234312 + + GSM152716 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152716/GSM152716.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152716-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Urinary bladder - 234313 + + GSM152717 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152717/GSM152717.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152717-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Popliteal soft tissue - 234314 + + GSM152718 + RNA + 1 + + Popliteal soft tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Soft Tissue Sarcoma +Histology: Malignant fibrous histiocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152718/GSM152718.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152718-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 234315 + + GSM152719 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Have you ever been diagnosed as having HPV on your PAP smear?: Yes +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152719/GSM152719.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152719-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 235690 + + GSM152720 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Medullary Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152720/GSM152720.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152720-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 235691 + + GSM152721 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152721/GSM152721.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152721-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 235692 + + GSM152722 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bloating +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152722/GSM152722.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152722-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 235694 + + GSM152723 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 2a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152723/GSM152723.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152723-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 235695 + + GSM152724 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152724/GSM152724.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152724-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 235696 + + GSM152725 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152725/GSM152725.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152725-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 235699 + + GSM152726 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152726/GSM152726.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152726-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 235701 + + GSM152727 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152727/GSM152727.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152727-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 241165 + + GSM152728 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 3a +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Mixed type renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152728/GSM152728.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152728-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 241167 + + GSM152729 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152729/GSM152729.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152729-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 241168 + + GSM152730 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 26 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152730/GSM152730.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152730-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 241169 + + GSM152731 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152731/GSM152731.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152731-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Urinary Bladder - 241178 + + GSM152732 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Small cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152732/GSM152732.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152732-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 241181 + + GSM152733 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bloating +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152733/GSM152733.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152733-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 241184 + + GSM152734 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152734/GSM152734.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152734-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 241187 + + GSM152735 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 1 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary mucinous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152735/GSM152735.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152735-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Parotid gland - 241188 + + GSM152736 + RNA + 1 + + Parotid gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Carcinoma of Skin +Histology: Metastatic Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152736/GSM152736.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152736-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 241191 + + GSM152737 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152737/GSM152737.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152737-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 241197 + + GSM152738 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Relapse Since Primary Treatment: No +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152738/GSM152738.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152738-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 241198 + + GSM152739 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Pathological Question: Grade +Pathological Value: X +Pathological Question: Multiple Tumors +Pathological Value: Yes +Primary Site: Endometrium +Pathological Question: Histology +Pathological Value: Metastatic Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152739/GSM152739.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152739-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 242910 + + GSM152740 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152740/GSM152740.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152740-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 242926 + + GSM152741 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152741/GSM152741.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152741-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Soft Tissue of Thigh - 242931 + + GSM152742 + RNA + 1 + + Soft Tissue of thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2b +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Soft Tissue of Thigh +Histology: Sarcoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152742/GSM152742.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152742-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Retroperitoneal mass - 251035 + + GSM152743 + RNA + 1 + + Retroperitoneal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Hormonal Treatment +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Clinical T: X +Clinical N: X +Clinical M: 1 +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 4B +Clinical Grade: X +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152743/GSM152743.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152743-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pancreas - 251036 + + GSM152744 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Head of Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152744/GSM152744.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152744-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 251038 + + GSM152745 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152745/GSM152745.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152745-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251040 + + GSM152746 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152746/GSM152746.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152746-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251042 + + GSM152747 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152747/GSM152747.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152747-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic mass - 251043 + + GSM152748 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: Yes +Retreatment Question: Stage +Retreatment Value: No AJCC Staging scheme for this site and histology +Primary Site: Endometrium +Retreatment Question: Histology +Retreatment Value: Metastatic Endometrial stromal sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152748/GSM152748.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152748-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251044 + + GSM152749 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152749/GSM152749.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152749-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectosigmoid - 251046 + + GSM152750 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152750/GSM152750.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152750-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 251047 + + GSM152751 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152751/GSM152751.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152751-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251048 + + GSM152752 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3A +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152752/GSM152752.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152752-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 251050 + + GSM152753 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152753/GSM152753.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152753-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251052 + + GSM152754 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152754/GSM152754.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152754-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 251053 + + GSM152755 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenosquamous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152755/GSM152755.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152755-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 251054 + + GSM152756 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152756/GSM152756.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152756-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 251055 + + GSM152757 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 33 +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152757/GSM152757.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152757-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Soft tissue of arm - 254350 + + GSM152758 + RNA + 1 + + Soft tissue of arm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Persistent Cough +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: X +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Metastatic Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152758/GSM152758.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152758-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254354 + + GSM152759 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152759/GSM152759.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152759-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Liver - 254357 + + GSM152760 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152760/GSM152760.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152760-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254359 + + GSM152761 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152761/GSM152761.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152761-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 254360 + + GSM152762 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152762/GSM152762.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152762-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 254361 + + GSM152763 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152763/GSM152763.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152763-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Jejunum - 254371 + + GSM152764 + RNA + 1 + + Jejunum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Jejunum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152764/GSM152764.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152764-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 254373 + + GSM152765 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152765/GSM152765.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152765-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254374 + + GSM152766 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152766/GSM152766.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152766-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 254375 + + GSM152767 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Workplace or household smokers?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Synovial sarcoma, monophasic fibrous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152767/GSM152767.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152767-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254376 + + GSM152768 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152768/GSM152768.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152768-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 254388 + + GSM152769 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152769/GSM152769.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152769-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 254391 + + GSM152770 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152770/GSM152770.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152770-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic sidewall nodule - 254392 + + GSM152771 + RNA + 1 + + Pelvic sidewall nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2B +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Dysgerminoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152771/GSM152771.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152771-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 254395 + + GSM152772 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152772/GSM152772.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152772-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Corpus Uteri - 254398 + + GSM152773 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152773/GSM152773.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152773-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 254403 + + GSM152774 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152774/GSM152774.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152774-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254436 + + GSM152775 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Relapse Since Primary Treatment: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152775/GSM152775.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152775-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254441 + + GSM152776 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Hormonal Treatment +Relapse Since Primary Treatment: No +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Clinical T: 4b +Clinical N: 2a +Clinical M: 1 +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 4 +Clinical Grade: 3 +Clinical ER: Positive +Clinical PR: Positive +Clinical HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152776/GSM152776.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152776-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Chest wall mass - 254444 + + GSM152777 + RNA + 1 + + Chest wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Question: Stage +Clinical Value: 4 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Clinical Question: Symptoms +Clinical Value: A +Primary Site: Skin +Clinical Question: Histology +Clinical Value: Anaplastic large cell lymphoma, primary cutaneous type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152777/GSM152777.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152777-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 256874 + + GSM152778 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Hematuria +Presenting Symptoms: Nocturia +PSA: Normal +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: X +Clinical M: 0 +Clinical Stage: Unknown +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152778/GSM152778.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152778-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Urinary bladder - 256878 + + GSM152779 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 4a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152779/GSM152779.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152779-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 256880 + + GSM152780 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152780/GSM152780.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152780-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 256881 + + GSM152781 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152781/GSM152781.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152781-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 256882 + + GSM152782 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 3a +Pathological M: X +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152782/GSM152782.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152782-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 256947 + + GSM152783 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Urgency +PSA: Normal +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152783/GSM152783.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152783-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 256950 + + GSM152784 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152784/GSM152784.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152784-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Humerus bone - 256954 + + GSM152785 + RNA + 1 + + Humerus bone + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Osseous +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Stomach +Histology: Metastatic Mucinous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152785/GSM152785.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152785-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 256956 + + GSM152786 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152786/GSM152786.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152786-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Pelvic Lymph Node - 256960 + + GSM152787 + RNA + 1 + + Pelvic lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b2 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4B +Pathological Grade: X +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152787/GSM152787.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152787-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Uterus - 256961 + + GSM152788 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152788/GSM152788.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152788-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Gastroesophageal Junction - 261174 + + GSM152789 + RNA + 1 + + Gastroesophageal junction + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Have you ever had esophagitis/reflux?: No +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3A +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Gastroesophageal Junction +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152789/GSM152789.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152789-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 262792 + + GSM152790 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152790/GSM152790.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152790-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Small intestine - 262793 + + GSM152791 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Weight loss +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 4 +Clinical Symptoms: B +Primary Site: Lymph Nodes +Histology: B-cell lymphoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152791/GSM152791.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152791-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 262794 + + GSM152792 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Mucinous cystic tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152792/GSM152792.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152792-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Vulva - 262795 + + GSM152793 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152793/GSM152793.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152793-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 262802 + + GSM152794 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152794/GSM152794.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152794-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 262803 + + GSM152795 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152795/GSM152795.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152795-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 262807 + + GSM152796 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152796/GSM152796.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152796-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Urinary Bladder - 262809 + + GSM152797 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Surgical +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152797/GSM152797.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152797-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 262813 + + GSM152798 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152798/GSM152798.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152798-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 262819 + + GSM152799 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152799/GSM152799.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152799-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 276657 + + GSM152800 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4B +Pathological Grade: X +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152800/GSM152800.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152800-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 38212 + + GSM152801 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152801/GSM152801.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152801-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Thyroid - 84135 + + GSM152802 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 54 +Clinical T: 1 +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152802/GSM152802.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152802-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 84139 + + GSM152803 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 26-30 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152803/GSM152803.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152803-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 1001 + + GSM179778 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179778/GSM179778.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179778-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 2489 + + GSM179779 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179779/GSM179779.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179779-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 6630 + + GSM179780 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179780/GSM179780.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179780-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pancreas - 78393 + + GSM179781 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179781/GSM179781.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179781-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 127824 + + GSM179782 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179782/GSM179782.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179782-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervix - 129657 + + GSM179783 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179783/GSM179783.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179783-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 170813 + + GSM179784 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Lung +Histology: Adenosquamous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179784/GSM179784.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179784-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Abdominal mass - 187248 + + GSM179785 + RNA + 1 + + Abdominal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Stage +Retreatment Value: No AJCC Staging scheme for this site and histology +Retreatment Question: Metastatic Sites +Retreatment Value: Small bowel mesentery +Primary Site: Corpus Uteri +Retreatment Question: Histology +Retreatment Value: Metastatic Myxoid leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179785/GSM179785.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179785-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 187252 + + GSM179786 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179786/GSM179786.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179786-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 187253 + + GSM179787 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179787/GSM179787.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179787-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 187254 + + GSM179788 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179788/GSM179788.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179788-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 193000 + + GSM179789 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 50 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179789/GSM179789.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179789-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 193004 + + GSM179790 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179790/GSM179790.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179790-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 193026 + + GSM179791 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179791/GSM179791.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179791-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 193028 + + GSM179792 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Nocturia +PSA: Elevated +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179792/GSM179792.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179792-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 195191 + + GSM179793 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179793/GSM179793.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179793-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 195194 + + GSM179794 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 62 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179794/GSM179794.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179794-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 199354 + + GSM179795 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 34 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179795/GSM179795.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179795-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Connective tissue of abdomen - 199376 + + GSM179796 + RNA + 1 + + Connective tissue of abdomen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Clinical Question: Metastatic Sites +Clinical Value: None +Clinical Question: Multiple Tumors +Clinical Value: No +Primary Site: Connective tissue of abdomen +Clinical Question: Histology +Clinical Value: Gastrointestinal stromal tumor, uncertain malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179796/GSM179796.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179796-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 199394 + + GSM179797 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179797/GSM179797.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179797-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 199399 + + GSM179798 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Chemotherapy +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3B +Clinical Grade: 3 +Primary Site: Ovary +Histology: Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179798/GSM179798.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179798-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 199400 + + GSM179799 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179799/GSM179799.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179799-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Gallbladder - 199404 + + GSM179800 + RNA + 1 + + Gallbladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 1B +Pathological Question: Grade +Pathological Value: 2 +Primary Site: Gallbladder +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179800/GSM179800.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179800-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 199405 + + GSM179801 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous Cell Carcinoma, Non-Keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179801/GSM179801.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179801-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Corpus Uteri - 202039 + + GSM179802 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179802/GSM179802.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179802-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 209690 + + GSM179803 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179803/GSM179803.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179803-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 209691 + + GSM179804 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179804/GSM179804.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179804-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 209692 + + GSM179805 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179805/GSM179805.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179805-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 209694 + + GSM179806 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179806/GSM179806.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179806-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 211371 + + GSM179807 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179807/GSM179807.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179807-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 211372 + + GSM179808 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: X +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma, endometrioid and papillary serous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179808/GSM179808.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179808-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 226427 + + GSM179809 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179809/GSM179809.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179809-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 231861 + + GSM179810 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179810/GSM179810.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179810-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pelvic mass - 234316 + + GSM179811 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2b +Retreatment N: X +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179811/GSM179811.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179811-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 234327 + + GSM179812 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 11-15 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Malignant granulosa cell tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179812/GSM179812.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179812-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 234329 + + GSM179813 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179813/GSM179813.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179813-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Acetabulum - 234331 + + GSM179814 + RNA + 1 + + Acetabulum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 56 +Prior Therapy: Chemotherapy +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2A +Pathological Question: Grade +Pathological Value: High +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: Yes +Primary Site: Pelvis +Pathological Question: Histology +Pathological Value: Dedifferentiated chondrosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179814/GSM179814.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179814-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ileum - 235698 + + GSM179815 + RNA + 1 + + Ileum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Pathological Question: Stage +Pathological Value: 2 +Pathological Question: Symptoms +Pathological Value: A +Primary Site: Ileum +Pathological Question: Histology +Pathological Value: Anaplastic large cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179815/GSM179815.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179815-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 241175 + + GSM179816 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179816/GSM179816.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179816-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-10-09 + + +Omentum - 241183 + + GSM179817 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179817/GSM179817.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179817-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pelvic lymph node - 241186 + + GSM179818 + RNA + 1 + + Pelvic lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: T +Clinical Value: X +Clinical Question: N +Clinical Value: X +Clinical Question: M +Clinical Value: X +Clinical Question: Stage +Clinical Value: Unknown +Clinical Question: Grade +Clinical Value: X +Primary Site: Skin of scrotum +Clinical Question: Histology +Clinical Value: Metastatic Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179818/GSM179818.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179818-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 241189 + + GSM179819 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179819/GSM179819.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179819-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 241194 + + GSM179820 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179820/GSM179820.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179820-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 241195 + + GSM179821 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179821/GSM179821.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179821-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 241196 + + GSM179822 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179822/GSM179822.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179822-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 241199 + + GSM179823 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179823/GSM179823.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179823-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 241200 + + GSM179824 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 85 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179824/GSM179824.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179824-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 242918 + + GSM179825 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179825/GSM179825.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179825-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 242921 + + GSM179826 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Metastatic Sites +Clinical Value: Lung +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179826/GSM179826.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179826-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 242924 + + GSM179827 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179827/GSM179827.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179827-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 242925 + + GSM179828 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179828/GSM179828.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179828-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 242928 + + GSM179829 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179829/GSM179829.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179829-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 242929 + + GSM179830 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179830/GSM179830.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179830-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 251039 + + GSM179831 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179831/GSM179831.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179831-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 251041 + + GSM179832 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179832/GSM179832.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179832-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 254351 + + GSM179833 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Sigmoidoscopy +Retreatment T: X +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179833/GSM179833.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179833-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 254355 + + GSM179834 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179834/GSM179834.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179834-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 254378 + + GSM179835 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179835/GSM179835.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179835-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 254387 + + GSM179836 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Question: Stage +Pathological Value: 3C +Pathological Question: Grade +Pathological Value: 3 +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Papillary serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179836/GSM179836.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179836-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 254393 + + GSM179837 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179837/GSM179837.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179837-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 254435 + + GSM179838 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179838/GSM179838.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179838-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 254440 + + GSM179839 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179839/GSM179839.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179839-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Liver - 254443 + + GSM179840 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 1 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179840/GSM179840.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179840-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 256870 + + GSM179841 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179841/GSM179841.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179841-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 256871 + + GSM179842 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 4 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179842/GSM179842.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179842-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 256872 + + GSM179843 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Hematuria +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179843/GSM179843.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179843-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 256875 + + GSM179844 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179844/GSM179844.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179844-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 256876 + + GSM179845 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Digital rectal exam +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179845/GSM179845.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179845-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 256885 + + GSM179846 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179846/GSM179846.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179846-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 256887 + + GSM179847 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179847/GSM179847.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179847-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 256888 + + GSM179848 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Pathological T: 1b +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Brain +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179848/GSM179848.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179848-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 256894 + + GSM179849 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Nocturia +PSA: Normal +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179849/GSM179849.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179849-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 256895 + + GSM179850 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Mixed epithelial tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179850/GSM179850.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179850-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 256944 + + GSM179851 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Adenocarcinoma with squamous metaplasia + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179851/GSM179851.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179851-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 256946 + + GSM179852 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Endometrium +Histology: Metastatic Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179852/GSM179852.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179852-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervix - 256948 + + GSM179853 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 43 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179853/GSM179853.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179853-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 256957 + + GSM179854 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 33 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Metaplastic Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179854/GSM179854.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179854-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 259729 + + GSM179855 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179855/GSM179855.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179855-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cecum - 259731 + + GSM179856 + RNA + 1 + + Cecum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179856/GSM179856.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179856-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Spleen - 259761 + + GSM179857 + RNA + 1 + + Spleen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Presenting Symptoms: Fever +Presenting Symptoms: Night sweats +Presenting Symptoms: Weight loss +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 1 +Clinical Symptoms: B +Primary Site: Spleen +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179857/GSM179857.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179857-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 259770 + + GSM179858 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179858/GSM179858.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179858-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 259771 + + GSM179859 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179859/GSM179859.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179859-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 259773 + + GSM179860 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179860/GSM179860.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179860-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 260847 + + GSM179861 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179861/GSM179861.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179861-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 260848 + + GSM179862 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179862/GSM179862.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179862-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 260852 + + GSM179863 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179863/GSM179863.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179863-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Abdominal mass - 260853 + + GSM179864 + RNA + 1 + + Abdominal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: X +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179864/GSM179864.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179864-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Liver - 260857 + + GSM179865 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179865/GSM179865.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179865-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 260858 + + GSM179866 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179866/GSM179866.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179866-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 260859 + + GSM179867 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179867/GSM179867.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179867-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 262790 + + GSM179868 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179868/GSM179868.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179868-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pancreas - 262800 + + GSM179869 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 54 +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2B +Pathological Question: Grade +Pathological Value: 2 +Primary Site: Pancreas +Pathological Question: Histology +Pathological Value: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179869/GSM179869.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179869-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 262801 + + GSM179870 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Abdominal pain +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Primary Site: Ovary +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179870/GSM179870.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179870-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Thyroid - 262804 + + GSM179871 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 1 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179871/GSM179871.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179871-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 262806 + + GSM179872 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179872/GSM179872.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179872-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 262811 + + GSM179873 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 47 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179873/GSM179873.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179873-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Urinary Bladder - 262812 + + GSM179874 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179874/GSM179874.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179874-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Parotid gland - 262814 + + GSM179875 + RNA + 1 + + Parotid gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological Question: T +Pathological Value: 4a +Pathological Question: N +Pathological Value: 2b +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 4A +Pathological Question: Grade +Pathological Value: 4 +Primary Site: Parotid gland +Pathological Question: Histology +Pathological Value: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179875/GSM179875.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179875-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Abdominal/Pelvic Tissue - 262815 + + GSM179876 + RNA + 1 + + Abdominal/Pelvic Tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Retreatment Question: Stage +Retreatment Value: No AJCC Staging scheme for this site and histology +Retreatment Question: Grade +Retreatment Value: High +Primary Site: Endometrium +Retreatment Question: Histology +Retreatment Value: Metastatic Spindle Cell Sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179876/GSM179876.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179876-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Conncective tissue of abdomen - 262821 + + GSM179877 + RNA + 1 + + Conncective tissue of abdomen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Primary Site: Conncective tissue of abdomen +Pathological Question: Histology +Pathological Value: Gastrointestinal stromal tumor, uncertain malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179877/GSM179877.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179877-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 262824 + + GSM179878 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Primary Site: Ovary +Histology: Undifferentiated carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179878/GSM179878.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179878-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 262825 + + GSM179879 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179879/GSM179879.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179879-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 262827 + + GSM179880 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179880/GSM179880.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179880-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 262828 + + GSM179881 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179881/GSM179881.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179881-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 262829 + + GSM179882 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179882/GSM179882.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179882-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 262830 + + GSM179883 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179883/GSM179883.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179883-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Esophagus - 267090 + + GSM179884 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3 +Pathological Question: Grade +Pathological Value: 2 +Primary Site: Gastroesophageal Junction +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179884/GSM179884.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179884-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267091 + + GSM179885 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Pathological T: 1a +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179885/GSM179885.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179885-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267092 + + GSM179886 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 365 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Medullary Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179886/GSM179886.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179886-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267093 + + GSM179887 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179887/GSM179887.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179887-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267096 + + GSM179888 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 11-15 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2A +Retreatment Grade: X +Retreatment Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179888/GSM179888.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179888-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267098 + + GSM179889 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179889/GSM179889.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179889-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 267101 + + GSM179890 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179890/GSM179890.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179890-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267104 + + GSM179891 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179891/GSM179891.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179891-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267105 + + GSM179892 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179892/GSM179892.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179892-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 267109 + + GSM179893 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Primary Site: Kidney +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179893/GSM179893.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179893-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectosigmoid - 267110 + + GSM179894 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179894/GSM179894.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179894-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267111 + + GSM179895 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 1c +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179895/GSM179895.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179895-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267114 + + GSM179896 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179896/GSM179896.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179896-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267116 + + GSM179897 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179897/GSM179897.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179897-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267117 + + GSM179898 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179898/GSM179898.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179898-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267118 + + GSM179899 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179899/GSM179899.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179899-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Esophagus - 267119 + + GSM179900 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3 +Pathological Question: Grade +Pathological Value: 3 +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179900/GSM179900.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179900-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 276643 + + GSM179901 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Nocturia +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179901/GSM179901.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179901-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 276644 + + GSM179902 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179902/GSM179902.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179902-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 276649 + + GSM179903 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Nocturia +Presenting Symptoms: Urgency +PSA: Normal +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179903/GSM179903.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179903-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 276652 + + GSM179904 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179904/GSM179904.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179904-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 276659 + + GSM179905 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179905/GSM179905.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179905-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 276662 + + GSM179906 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bloating +Retreatment T: 3b +Retreatment N: X +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179906/GSM179906.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179906-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervix - 276668 + + GSM179907 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 66 +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179907/GSM179907.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179907-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 276669 + + GSM179908 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179908/GSM179908.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179908-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 276671 + + GSM179909 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179909/GSM179909.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179909-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 276675 + + GSM179910 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179910/GSM179910.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179910-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 286630 + + GSM179911 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 80 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179911/GSM179911.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179911-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 286631 + + GSM179912 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179912/GSM179912.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179912-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 286633 + + GSM179913 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 16-20 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: 1 +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179913/GSM179913.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179913-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pelvic Mass - 286634 + + GSM179914 + RNA + 1 + + Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179914/GSM179914.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179914-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 286641 + + GSM179915 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 65 +Clinical T: 1a +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Brain +Clinical Stage: 4 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179915/GSM179915.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179915-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Spinal cord - 286670 + + GSM179916 + RNA + 1 + + Spinal cord + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Spinal cord +Clinical Question: Histology +Clinical Value: Ependymoma, myxopapillary + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179916/GSM179916.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179916-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 286671 + + GSM179917 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1C +Clinical Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179917/GSM179917.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179917-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 286674 + + GSM179918 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179918/GSM179918.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179918-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 286675 + + GSM179919 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179919/GSM179919.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179919-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 290716 + + GSM179920 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179920/GSM179920.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179920-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Urinary Bladder - 290717 + + GSM179921 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179921/GSM179921.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179921-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290718 + + GSM179922 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179922/GSM179922.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179922-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Renal Pelvis - 290719 + + GSM179923 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 0a +Clinical Grade: 2 +Primary Site: Renal Pelvis +Histology: Papillary transitional cell carcinoma, non-invasive + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179923/GSM179923.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179923-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290720 + + GSM179924 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179924/GSM179924.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179924-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290721 + + GSM179925 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179925/GSM179925.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179925-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Urinary Bladder - 290723 + + GSM179926 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179926/GSM179926.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179926-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervical Lymph Node - 290727 + + GSM179927 + RNA + 1 + + Cervical Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Fever +Presenting Symptoms: Lymphadenopathy +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 4 +Clinical Symptoms: B +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179927/GSM179927.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179927-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290728 + + GSM179928 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179928/GSM179928.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179928-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 290729 + + GSM179929 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179929/GSM179929.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179929-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290730 + + GSM179930 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179930/GSM179930.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179930-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 290731 + + GSM179931 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179931/GSM179931.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179931-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 290733 + + GSM179932 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Mammogram: No +Oral contraceptives?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179932/GSM179932.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179932-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 298138 + + GSM179933 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: is +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 0 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Intraductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179933/GSM179933.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179933-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 305114 + + GSM179934 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179934/GSM179934.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179934-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 305116 + + GSM179935 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179935/GSM179935.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179935-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 305124 + + GSM179936 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179936/GSM179936.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179936-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 305128 + + GSM179937 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Constipation +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179937/GSM179937.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179937-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 305131 + + GSM179938 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179938/GSM179938.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179938-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 305132 + + GSM179939 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Metastatic Sites +Clinical Value: Lungs, Retroperitoneum, Bone +Primary Site: Corpus Uteri +Clinical Question: Histology +Clinical Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179939/GSM179939.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179939-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 308690 + + GSM179940 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179940/GSM179940.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179940-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 308692 + + GSM179941 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179941/GSM179941.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179941-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 308693 + + GSM179942 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179942/GSM179942.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179942-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 308696 + + GSM179943 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179943/GSM179943.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179943-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Thyroid - 308702 + + GSM179944 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179944/GSM179944.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179944-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Iliac Lymph Node - 309397 + + GSM179945 + RNA + 1 + + Iliac Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: X +Retreatment N: 3 +Retreatment M: 0 +Retreatment Stage: 3C +Primary Site: Skin of vulva +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179945/GSM179945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179945-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 309402 + + GSM179946 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179946/GSM179946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179946-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Thyroid - 309407 + + GSM179947 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Voice changes +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Multiple Tumours: Yes +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179947/GSM179947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179947-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 309409 + + GSM179948 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179948/GSM179948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179948-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 309412 + + GSM179949 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179949/GSM179949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179949-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 309415 + + GSM179950 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 31-35 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179950/GSM179950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179950-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 309420 + + GSM179951 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179951/GSM179951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179951-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Liver - 309425 + + GSM179952 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 27 +Clinical Question: T +Clinical Value: 1 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 1 +Clinical Question: Grade +Clinical Value: 2 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: chemoembolization +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179952/GSM179952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179952-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Esophagus - 310512 + + GSM179953 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Radiation +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 11-15 +Presenting Symptoms: Difficulties in swallowing +Presenting Symptoms: Voice changes +Retreatment Question: Grade +Retreatment Value: X +Retreatment Question: T +Retreatment Value: 4a +Retreatment Question: N +Retreatment Value: 0 +Retreatment Question: M +Retreatment Value: 0 +Retreatment Question: Metastatic Sites +Retreatment Value: esophagus +Retreatment Question: Stage +Retreatment Value: 4A +Primary Site: Pyriform sinus +Retreatment Question: Histology +Retreatment Value: Metastatic Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179953/GSM179953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179953-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 310528 + + GSM179954 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +PSA: Elevated +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179954/GSM179954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179954-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 344191 + + GSM179955 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179955/GSM179955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179955-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervix - 344194 + + GSM179956 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179956/GSM179956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179956-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 344197 + + GSM179957 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 41 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179957/GSM179957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179957-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 1046 + + GSM203622 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203622/GSM203622.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203622-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 5238 + + GSM203623 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Intracystic carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203623/GSM203623.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203623-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 84137 + + GSM203624 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203624/GSM203624.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203624-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 89120 + + GSM203625 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203625/GSM203625.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203625-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 101109 + + GSM203626 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203626/GSM203626.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203626-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 143651 + + GSM203627 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203627/GSM203627.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203627-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 151616 + + GSM203628 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: is +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 0 +Pathological Grade: X +Primary Site: Breast +Histology: Lobular carcinoma in-situ + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203628/GSM203628.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203628-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 154210 + + GSM203629 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Vaginal bleeding +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203629/GSM203629.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203629-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 161532 + + GSM203630 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203630/GSM203630.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203630-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Small bowel - 170807 + + GSM203631 + RNA + 1 + + Small bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Presenting Symptoms: Vaginal bleeding +Retreatment T: 3c +Retreatment N: 0 +Retreatment M: X +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203631/GSM203631.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203631-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 170819 + + GSM203632 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203632/GSM203632.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203632-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Spleen - 181032 + + GSM203633 + RNA + 1 + + Spleen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical Stage: 4 +Clinical Symptoms: A +Primary Site: Spleen +Histology: Splenic marginal zone B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203633/GSM203633.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203633-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 181037 + + GSM203634 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203634/GSM203634.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203634-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 187243 + + GSM203635 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203635/GSM203635.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203635-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Omentum - 187245 + + GSM203636 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: T +Pathological Value: 3C +Pathological Question: N +Pathological Value: x +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3C +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Serous surface papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203636/GSM203636.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203636-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 187246 + + GSM203637 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203637/GSM203637.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203637-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 187251 + + GSM203638 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Abdominal pain +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Primary Site: Ovary +Histology: Mucinous cystic tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203638/GSM203638.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203638-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 193025 + + GSM203639 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203639/GSM203639.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203639-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 199395 + + GSM203640 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203640/GSM203640.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203640-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 205690 + + GSM203641 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203641/GSM203641.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203641-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 205691 + + GSM203642 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203642/GSM203642.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203642-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-10-09 + + +Lung - 205700 + + GSM203643 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203643/GSM203643.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203643-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 205701 + + GSM203644 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Renal Pelvis +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203644/GSM203644.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203644-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 205706 + + GSM203645 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203645/GSM203645.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203645-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 205709 + + GSM203646 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 58 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203646/GSM203646.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203646-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Rectum - 207530 + + GSM203647 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Diagnosis made by: Colonoscopy +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2A +Clinical Grade: 3 +Clinical Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203647/GSM203647.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203647-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 207531 + + GSM203648 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203648/GSM203648.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203648-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Neck mass - 211374 + + GSM203649 + RNA + 1 + + Neck mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203649/GSM203649.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203649-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 211376 + + GSM203650 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203650/GSM203650.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203650-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 211382 + + GSM203651 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2a +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203651/GSM203651.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203651-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Hemidiaphragm - 211385 + + GSM203652 + RNA + 1 + + Hemidiaphragm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3 +Retreatment Grade: 3 +Primary Site: Retroperitoneum +Histology: Metastatic Dedifferentiated liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203652/GSM203652.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203652-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 211386 + + GSM203653 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203653/GSM203653.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203653-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Omentum - 211387 + + GSM203654 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: T +Pathological Value: 3c +Pathological Question: N +Pathological Value: X +Pathological Question: M +Pathological Value: X +Pathological Question: Stage +Pathological Value: Unknown +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Serous surface papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203654/GSM203654.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203654-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 228541 + + GSM203655 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 36 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203655/GSM203655.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203655-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 228543 + + GSM203656 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 61-65 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 37 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Renal Pelvis +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203656/GSM203656.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203656-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 228547 + + GSM203657 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203657/GSM203657.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203657-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 231860 + + GSM203658 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203658/GSM203658.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203658-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 234318 + + GSM203659 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1a +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: X +Pathological Multiple Tumors: Yes +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203659/GSM203659.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203659-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 234323 + + GSM203660 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 34 +Clinical Question: T +Clinical Value: 3 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3A +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Multiple Tumors +Clinical Value: Yes +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Cholangiocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203660/GSM203660.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203660-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 234328 + + GSM203661 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 19 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Primary Site: Ovary +Histology: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203661/GSM203661.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203661-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 235700 + + GSM203662 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 2 +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Osseous +Clinical Stage: 4 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203662/GSM203662.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203662-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 254389 + + GSM203663 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203663/GSM203663.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203663-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Brain - 254394 + + GSM203664 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Brain +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Lung +Histology: Metastatic Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203664/GSM203664.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203664-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 254397 + + GSM203665 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203665/GSM203665.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203665-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Stomach - 254399 + + GSM203666 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Primary Site: Stomach +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203666/GSM203666.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203666-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 254400 + + GSM203667 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203667/GSM203667.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203667-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 254401 + + GSM203668 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203668/GSM203668.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203668-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 254402 + + GSM203669 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 200 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Pathological T: 4d +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Inflammatory Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203669/GSM203669.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203669-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Rectum - 254405 + + GSM203670 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203670/GSM203670.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203670-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 262818 + + GSM203671 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 1b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 1 +Retreatment Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203671/GSM203671.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203671-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 262820 + + GSM203672 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203672/GSM203672.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203672-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 262826 + + GSM203673 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203673/GSM203673.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203673-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 267095 + + GSM203674 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203674/GSM203674.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203674-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pancreas - 276642 + + GSM203675 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Exocrine Pancreas +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203675/GSM203675.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203675-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 276695 + + GSM203676 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: T +Retreatment Value: 3 +Retreatment Question: N +Retreatment Value: x +Retreatment Question: M +Retreatment Value: 1 +Retreatment Question: Metastatic Sites +Retreatment Value: Bone +Retreatment Question: Stage +Retreatment Value: 4 +Retreatment Question: Grade +Retreatment Value: X +Primary Site: Liver +Retreatment Question: Histology +Retreatment Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203676/GSM203676.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203676-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 284060 + + GSM203677 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203677/GSM203677.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203677-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Adrenal Gland - 284061 + + GSM203678 + RNA + 1 + + Adrenal Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Adrenal Gland +Clinical Question: Histology +Clinical Value: Pheochromocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203678/GSM203678.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203678-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 286672 + + GSM203679 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203679/GSM203679.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203679-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 286673 + + GSM203680 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Pathological T: 3a +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203680/GSM203680.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203680-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ileum - 290715 + + GSM203681 + RNA + 1 + + Ileum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Pathological Question: Metastatic Sites +Pathological Value: Hepatic +Primary Site: Ileum +Pathological Question: Histology +Pathological Value: Carcinoid tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203681/GSM203681.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203681-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Jejunum - 290725 + + GSM203682 + RNA + 1 + + Jejunum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Immunotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: X +Retreatment N: 0 +Retreatment M: 1c +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Primary Site: Melanoma of Skin +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203682/GSM203682.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203682-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Thyroid - 290726 + + GSM203683 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203683/GSM203683.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203683-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 290734 + + GSM203684 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203684/GSM203684.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203684-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 298074 + + GSM203685 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Pathological T: 1c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203685/GSM203685.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203685-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 308691 + + GSM203686 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203686/GSM203686.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203686-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 308695 + + GSM203687 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203687/GSM203687.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203687-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 308699 + + GSM203688 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 54 +Screening studies performed?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203688/GSM203688.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203688-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Soft Tissue of Neck - 308701 + + GSM203689 + RNA + 1 + + Soft Tissue of Neck + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Clinical Question: Stage +Clinical Value: No AJCC staging for unknown primary +Primary Site: Unknown +Clinical Question: Histology +Clinical Value: Metastatic Keratinizing Squamous Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203689/GSM203689.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203689-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 308707 + + GSM203690 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203690/GSM203690.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203690-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 309390 + + GSM203691 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203691/GSM203691.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203691-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 309391 + + GSM203692 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203692/GSM203692.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203692-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 309393 + + GSM203693 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203693/GSM203693.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203693-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 309394 + + GSM203694 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203694/GSM203694.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203694-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Axillary lymph node - 309395 + + GSM203695 + RNA + 1 + + Axillary lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Metastatic Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203695/GSM203695.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203695-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 309406 + + GSM203696 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203696/GSM203696.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203696-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 309410 + + GSM203697 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203697/GSM203697.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203697-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Thyroid - 309411 + + GSM203698 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Primary Site: Thyroid +Histology: Medullary carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203698/GSM203698.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203698-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 309414 + + GSM203699 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203699/GSM203699.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203699-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 309417 + + GSM203700 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203700/GSM203700.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203700-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 309418 + + GSM203701 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Negative +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203701/GSM203701.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203701-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 309419 + + GSM203702 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203702/GSM203702.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203702-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pancreas - 309421 + + GSM203703 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203703/GSM203703.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203703-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 310511 + + GSM203704 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203704/GSM203704.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203704-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 310513 + + GSM203705 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203705/GSM203705.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203705-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 310516 + + GSM203706 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Vaginal bleeding +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203706/GSM203706.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203706-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 310517 + + GSM203707 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203707/GSM203707.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203707-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 310519 + + GSM203708 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 153 +Prior Therapy: Chemotherapy +Mammogram: Yes +Pathological T: 1b +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203708/GSM203708.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203708-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 310520 + + GSM203709 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203709/GSM203709.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203709-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 310521 + + GSM203710 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Tubulo-papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203710/GSM203710.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203710-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 310525 + + GSM203711 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +PSA: Elevated +# of years PSA Tested?: 16-20 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203711/GSM203711.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203711-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 310526 + + GSM203712 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203712/GSM203712.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203712-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 311854 + + GSM203713 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203713/GSM203713.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203713-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Urinary Bladder - 311858 + + GSM203714 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Prior Therapy: Surgical +Pathological T: 2b +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203714/GSM203714.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203714-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 311859 + + GSM203715 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Dribbling +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 6-10 +Pathological T: 3b +Pathological N: 1 +Pathological M: X +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203715/GSM203715.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203715-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 311866 + + GSM203716 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 77 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203716/GSM203716.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203716-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 311869 + + GSM203717 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203717/GSM203717.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203717-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 311870 + + GSM203718 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 47 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203718/GSM203718.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203718-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pelvic Mass - 311872 + + GSM203719 + RNA + 1 + + Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2B +Clinical Grade: 3 +Primary Site: Ovary +Histology: Metastatic Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203719/GSM203719.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203719-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Soft tissue of arm - 311876 + + GSM203720 + RNA + 1 + + Soft tissue of arm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Primary Site: Soft tissue of arm +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203720/GSM203720.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203720-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Soft Tissue Thigh - 311878 + + GSM203721 + RNA + 1 + + Soft Tissue Thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 210 +Prior Therapy: Radiation +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 4 +Clinical Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Thigh +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203721/GSM203721.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203721-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 317475 + + GSM203722 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 200 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203722/GSM203722.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203722-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 317481 + + GSM203723 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203723/GSM203723.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203723-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341507 + + GSM203724 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203724/GSM203724.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203724-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 341508 + + GSM203725 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2B +Primary Site: Ovary +Histology: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203725/GSM203725.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203725-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 341510 + + GSM203726 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 55 +Mammogram: Yes +Oophorectomy?: No +Pathological T: 3 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203726/GSM203726.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203726-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 341513 + + GSM203727 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 29 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203727/GSM203727.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203727-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341516 + + GSM203728 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 1 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203728/GSM203728.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203728-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 341517 + + GSM203729 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203729/GSM203729.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203729-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 341522 + + GSM203730 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 49 +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203730/GSM203730.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203730-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341526 + + GSM203731 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: is +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 0 +Pathological Grade: 1 +Primary Site: Colon +Histology: Carcinoma in situ arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203731/GSM203731.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203731-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 341530 + + GSM203732 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203732/GSM203732.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203732-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341541 + + GSM203733 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203733/GSM203733.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203733-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Omentum - 341544 + + GSM203734 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203734/GSM203734.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203734-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 341546 + + GSM203735 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203735/GSM203735.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203735-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 341548 + + GSM203736 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203736/GSM203736.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203736-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 341549 + + GSM203737 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2B +Clinical Grade: X +Primary Site: Cervix Uteri +Histology: Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203737/GSM203737.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203737-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Urinary bladder - 341550 + + GSM203738 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203738/GSM203738.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203738-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pelvic mass - 341551 + + GSM203739 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Presenting Symptoms: Abdominal pain +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3B +Clinical Grade: 2 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203739/GSM203739.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203739-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 341552 + + GSM203740 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 100 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203740/GSM203740.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203740-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 341553 + + GSM203741 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203741/GSM203741.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203741-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 341554 + + GSM203742 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203742/GSM203742.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203742-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341555 + + GSM203743 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Vomiting +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203743/GSM203743.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203743-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 341556 + + GSM203744 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203744/GSM203744.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203744-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Sigmoid colon - 341558 + + GSM203745 + RNA + 1 + + Sigmoid colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological Question: Stage +Pathological Value: No AJCC scheme for unknown primary +Primary Site: Unknown +Pathological Question: Histology +Pathological Value: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203745/GSM203745.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203745-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 344186 + + GSM203746 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203746/GSM203746.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203746-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Retroperitoneum - 344193 + + GSM203747 + RNA + 1 + + Retroperitoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Retroperitoneum +Histology: Dedifferentiated liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203747/GSM203747.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203747-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 344195 + + GSM203748 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203748/GSM203748.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203748-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Mesenteric Lymph Node - 344203 + + GSM203749 + RNA + 1 + + Mesenteric Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 3 +Clinical Symptoms: A +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203749/GSM203749.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203749-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 345983 + + GSM203750 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3C +Pathological Question: Grade +Pathological Value: 2 +Primary Site: Liver +Pathological Question: Histology +Pathological Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203750/GSM203750.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203750-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 345987 + + GSM203751 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Clinical Question: T +Clinical Value: 3 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3A +Clinical Question: Grade +Clinical Value: 3 +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203751/GSM203751.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203751-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 345988 + + GSM203752 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203752/GSM203752.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203752-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Bladder - 345992 + + GSM203753 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 48 +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Prostate +Histology: Small Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203753/GSM203753.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203753-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 345997 + + GSM203754 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 87 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: Yes +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203754/GSM203754.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203754-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 346004 + + GSM203755 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203755/GSM203755.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203755-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pectoral Muscle - 346005 + + GSM203756 + RNA + 1 + + Pectoral Muscle + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Hormonal Treatment +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Retreatment T: 2 +Retreatment N: 1a +Retreatment M: 0 +Retreatment Stage: 2B +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Metastatic Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203756/GSM203756.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203756-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pelvic Tissue - 348055 + + GSM203757 + RNA + 1 + + Pelvic Tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Clinical Question: T +Clinical Value: x +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: Unknown +Clinical Question: Grade +Clinical Value: 3 +Primary Site: Endometrium +Clinical Question: Histology +Clinical Value: Metastatic Malignant Mixed Mullerian Tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203757/GSM203757.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203757-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 348057 + + GSM203758 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203758/GSM203758.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203758-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 348058 + + GSM203759 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203759/GSM203759.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203759-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cerebellar tissue - 348059 + + GSM203760 + RNA + 1 + + Cerebellar tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Brain +Pathological Stage: 4 +Pathological Grade: X +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Lung +Histology: Metastatic Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203760/GSM203760.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203760-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pancreas - 348060 + + GSM203761 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203761/GSM203761.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203761-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 348061 + + GSM203762 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Mixed endometrioid and serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203762/GSM203762.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203762-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 348062 + + GSM203763 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 33 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203763/GSM203763.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203763-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 348063 + + GSM203764 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203764/GSM203764.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203764-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 348064 + + GSM203765 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203765/GSM203765.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203765-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 348066 + + GSM203766 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 1 +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203766/GSM203766.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203766-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Thyroid - 348067 + + GSM203767 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3 +Primary Site: Thyroid +Histology: Papillary adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203767/GSM203767.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203767-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 348069 + + GSM203768 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1C +Clinical Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203768/GSM203768.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203768-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 348070 + + GSM203769 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203769/GSM203769.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203769-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 351885 + + GSM203770 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 37 +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203770/GSM203770.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203770-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 351887 + + GSM203771 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203771/GSM203771.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203771-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 362570 + + GSM203772 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203772/GSM203772.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203772-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Unspecified soft tissue from abdomen or pelvis - 362571 + + GSM203773 + RNA + 1 + + Unspecified soft tissue from abdomen or pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203773/GSM203773.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203773-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Thyroid - 362572 + + GSM203774 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203774/GSM203774.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203774-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 362575 + + GSM203775 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 54 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203775/GSM203775.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203775-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 362581 + + GSM203776 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Primary Site: Myometrium +Pathological Question: Histology +Pathological Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203776/GSM203776.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203776-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 362588 + + GSM203777 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 4 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203777/GSM203777.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203777-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 362600 + + GSM203778 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Hesitancy +Presenting Symptoms: Nocturia +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 4 +Pathological N: X +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203778/GSM203778.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203778-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 362601 + + GSM203779 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 61-65 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203779/GSM203779.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203779-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Rectosigmoid - 362602 + + GSM203780 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203780/GSM203780.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203780-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 362603 + + GSM203781 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203781/GSM203781.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203781-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 362605 + + GSM203782 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203782/GSM203782.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203782-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 362607 + + GSM203783 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203783/GSM203783.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203783-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 366607 + + GSM203784 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 124 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203784/GSM203784.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203784-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 371430 + + GSM203785 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203785/GSM203785.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203785-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 371433 + + GSM203786 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203786/GSM203786.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203786-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 371434 + + GSM203787 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Persistent Cough +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Mucinous bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203787/GSM203787.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203787-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Rectum - 371435 + + GSM203788 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203788/GSM203788.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203788-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 371436 + + GSM203789 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 54 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: X +Pathological Multiple Tumors: Yes +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203789/GSM203789.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203789-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 371438 + + GSM203790 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 83 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203790/GSM203790.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203790-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 371439 + + GSM203791 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Clinical T: 2b +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 4B +Clinical Grade: 3 +Primary Site: Cervix Uteri +Histology: Small cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203791/GSM203791.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203791-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 371441 + + GSM203792 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 38 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oophorectomy?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203792/GSM203792.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203792-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Urinary bladder - 371445 + + GSM203793 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203793/GSM203793.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203793-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Omentum - 371446 + + GSM203794 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Scheme for unknown primary +Primary Site: Unknown +Clinical Question: Histology +Clinical Value: Metastatic Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203794/GSM203794.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203794-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 371447 + + GSM203795 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203795/GSM203795.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203795-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 383397 + + GSM203796 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203796/GSM203796.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203796-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pelvic mass - 383398 + + GSM203797 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203797/GSM203797.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203797-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 383401 + + GSM203798 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 54 +Pathological T: 1c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203798/GSM203798.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203798-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 383409 + + GSM203799 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203799/GSM203799.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203799-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 383410 + + GSM203800 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203800/GSM203800.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203800-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 388910 + + GSM203801 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203801/GSM203801.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203801-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 267100 + + GSM231868 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231868/GSM231868.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231868-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 305117 + + GSM231869 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 2 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231869/GSM231869.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231869-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Fallopian Tube - 309423 + + GSM231870 + RNA + 1 + + Fallopian Tube + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Fallopian Tube +Histology: Serous cystadenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231870/GSM231870.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231870-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Cervix - 311868 + + GSM231871 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 3a +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231871/GSM231871.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231871-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 317490 + + GSM231872 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +PSA: Elevated +# of years PSA Tested?: 11-15 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231872/GSM231872.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231872-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 341534 + + GSM231873 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231873/GSM231873.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231873-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 344201 + + GSM231874 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231874/GSM231874.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231874-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 345961 + + GSM231875 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231875/GSM231875.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231875-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 345963 + + GSM231876 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231876/GSM231876.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231876-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 345966 + + GSM231877 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231877/GSM231877.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231877-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 345968 + + GSM231878 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231878/GSM231878.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231878-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 345971 + + GSM231879 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231879/GSM231879.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231879-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 345975 + + GSM231880 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231880/GSM231880.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231880-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 345976 + + GSM231881 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 48 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231881/GSM231881.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231881-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 345993 + + GSM231882 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231882/GSM231882.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231882-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Liver - 345994 + + GSM231883 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Rectum +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231883/GSM231883.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231883-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 345995 + + GSM231884 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 48 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Pathological T: 1c +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231884/GSM231884.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231884-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 346001 + + GSM231885 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231885/GSM231885.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231885-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 346010 + + GSM231886 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 56 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231886/GSM231886.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231886-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 346011 + + GSM231887 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231887/GSM231887.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231887-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 362584 + + GSM231888 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 111 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231888/GSM231888.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231888-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 362589 + + GSM231889 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 26 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231889/GSM231889.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231889-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Liver - 362591 + + GSM231890 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Clinical Question: T +Clinical Value: 2 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 2 +Clinical Question: Grade +Clinical Value: 2 +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231890/GSM231890.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231890-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 362593 + + GSM231891 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231891/GSM231891.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231891-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 362594 + + GSM231892 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231892/GSM231892.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231892-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 362596 + + GSM231893 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231893/GSM231893.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231893-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 362598 + + GSM231894 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231894/GSM231894.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231894-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 362599 + + GSM231895 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231895/GSM231895.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231895-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 362608 + + GSM231896 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 4 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231896/GSM231896.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231896-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 362609 + + GSM231897 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 37 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231897/GSM231897.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231897-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 366583 + + GSM231898 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231898/GSM231898.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231898-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 366585 + + GSM231899 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231899/GSM231899.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231899-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 366592 + + GSM231900 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: Yes +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231900/GSM231900.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231900-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Supraclavicular lymph node - 366594 + + GSM231901 + RNA + 1 + + Supraclavicular lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Lymphadenopathy +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 2 +Clinical Symptoms: A +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Malignant lymphoma, small B-cell lymphocytic + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231901/GSM231901.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231901-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 366595 + + GSM231902 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 182 +Prior Therapy: Chemotherapy +Prior Therapy: Hormonal Treatment +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4b +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231902/GSM231902.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231902-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 366597 + + GSM231903 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Renal cell carcinoma, sarcomatoid + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231903/GSM231903.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231903-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 366598 + + GSM231904 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 4 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231904/GSM231904.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231904-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 366602 + + GSM231905 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231905/GSM231905.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231905-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Urinary Bladder - 366609 + + GSM231906 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231906/GSM231906.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231906-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 366614 + + GSM231907 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231907/GSM231907.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231907-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 366620 + + GSM231908 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231908/GSM231908.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231908-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ureter - 383399 + + GSM231909 + RNA + 1 + + Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumours: Yes +Primary Site: Renal Pelvis +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231909/GSM231909.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231909-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 383404 + + GSM231910 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231910/GSM231910.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231910-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 383405 + + GSM231911 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231911/GSM231911.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231911-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 383408 + + GSM231912 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 210 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231912/GSM231912.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231912-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 383413 + + GSM231913 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Bloating +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Primary Site: Ovary +Histology: Mucinous cystic tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231913/GSM231913.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231913-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 383890 + + GSM231914 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231914/GSM231914.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231914-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 383903 + + GSM231915 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231915/GSM231915.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231915-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 383906 + + GSM231916 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Pathological T: 1b +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231916/GSM231916.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231916-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 383909 + + GSM231917 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 26-30 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231917/GSM231917.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231917-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 383911 + + GSM231918 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231918/GSM231918.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231918-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 383913 + + GSM231919 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231919/GSM231919.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231919-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 384490 + + GSM231920 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 39 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231920/GSM231920.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231920-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 384492 + + GSM231921 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231921/GSM231921.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231921-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Pancreas - 384493 + + GSM231922 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 38 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 4 +Primary Site: Exocrine Pancreas +Histology: Carcinoma with osteoclast-like giant cells + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231922/GSM231922.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231922-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Retroperitoneum - 384494 + + GSM231923 + RNA + 1 + + Retroperitoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Retroperitoneum +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231923/GSM231923.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231923-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 384496 + + GSM231924 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Presenting Symptoms: Vaginal bleeding +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3B +Clinical Grade: 3 +Primary Site: Ovary +Histology: Clear cell adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231924/GSM231924.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231924-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 384499 + + GSM231925 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231925/GSM231925.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231925-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 384502 + + GSM231926 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 58 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231926/GSM231926.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231926-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 384503 + + GSM231927 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 64 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231927/GSM231927.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231927-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 384504 + + GSM231928 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231928/GSM231928.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231928-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 384507 + + GSM231929 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231929/GSM231929.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231929-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 384508 + + GSM231930 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 37 +Presenting Symptoms: Abdominal pain +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 3 +Primary Site: Ovary +Histology: Sertoli-Leydig cell tumor, poorly differentiated + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231930/GSM231930.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231930-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 384509 + + GSM231931 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231931/GSM231931.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231931-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 388891 + + GSM231932 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231932/GSM231932.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231932-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 388892 + + GSM231933 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3b +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 4 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231933/GSM231933.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231933-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Rectum - 388893 + + GSM231934 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231934/GSM231934.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231934-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 388900 + + GSM231935 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231935/GSM231935.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231935-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 388907 + + GSM231936 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231936/GSM231936.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231936-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 388908 + + GSM231937 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231937/GSM231937.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231937-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 388909 + + GSM231938 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231938/GSM231938.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231938-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 388935 + + GSM231939 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231939/GSM231939.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231939-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Liver - 388936 + + GSM231940 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3A +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Symptoms +Primary Site: Liver +Pathological Question: Histology +Pathological Value: Cholangiocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231940/GSM231940.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231940-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Stomach - 388950 + + GSM231941 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Have you ever had esophagitis/reflux?: No +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Stomach +Clinical Question: Histology +Clinical Value: Solitary fibrous tumor, benign + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231941/GSM231941.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231941-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 388951 + + GSM231942 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 76 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231942/GSM231942.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231942-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Thyroid - 388953 + + GSM231943 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Difficulties in swallowing +Pathological T: 1 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231943/GSM231943.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231943-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 388954 + + GSM231944 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231944/GSM231944.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231944-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Soft Tissue of arm - 388980 + + GSM231945 + RNA + 1 + + Soft Tissue of arm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3 +Retreatment Grade: 3 +Primary Site: Soft Tissue of arm +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231945/GSM231945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231945-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Small intestine - 403725 + + GSM231946 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical Stage: Unknown +Clinical Symptoms: A +Primary Site: Small intestine +Histology: Malignant lymphoma, large B-cell, diffuse, immunoblastic, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231946/GSM231946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231946-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 403728 + + GSM231947 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231947/GSM231947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231947-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Cervical lymph node - 403729 + + GSM231948 + RNA + 1 + + Cervical lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 1 +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Oral cavity +Histology: Metastatic Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231948/GSM231948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231948-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Vulva - 403730 + + GSM231949 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Vulva +Histology: Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231949/GSM231949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231949-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 403732 + + GSM231950 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231950/GSM231950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231950-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 403734 + + GSM231951 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231951/GSM231951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231951-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 403738 + + GSM231952 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231952/GSM231952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231952-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 403739 + + GSM231953 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231953/GSM231953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231953-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 403740 + + GSM231954 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 2 +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231954/GSM231954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231954-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404990 + + GSM231955 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231955/GSM231955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231955-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404991 + + GSM231956 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231956/GSM231956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231956-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 404992 + + GSM231957 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 4 +Clinical Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231957/GSM231957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231957-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404993 + + GSM231958 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231958/GSM231958.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231958-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404994 + + GSM231959 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231959/GSM231959.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231959-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 404995 + + GSM231960 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231960/GSM231960.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231960-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404996 + + GSM231961 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231961/GSM231961.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231961-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 404997 + + GSM231962 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231962/GSM231962.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231962-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 404998 + + GSM231963 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231963/GSM231963.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231963-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404999 + + GSM231964 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231964/GSM231964.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231964-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 405000 + + GSM231965 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Pathological T: 1a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Primary Site: Ovary +Histology: Mixed epithelial tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231965/GSM231965.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231965-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 405001 + + GSM231966 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 72 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231966/GSM231966.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231966-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 405002 + + GSM231967 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231967/GSM231967.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231967-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Thyroid - 405003 + + GSM231968 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 4a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 4A +Primary Site: Thyroid +Histology: Carcinoma, undifferentiated + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231968/GSM231968.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231968-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 405004 + + GSM231969 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231969/GSM231969.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231969-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Esophagus - 407830 + + GSM231970 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2B +Pathological Question: Grade +Pathological Value: 4 +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Signet ring cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231970/GSM231970.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231970-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 409599 + + GSM231971 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 61-65 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231971/GSM231971.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231971-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 409601 + + GSM231972 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231972/GSM231972.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231972-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Thyroid - 409602 + + GSM231973 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Multiple Tumours: Yes +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231973/GSM231973.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231973-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 409603 + + GSM231974 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231974/GSM231974.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231974-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 409605 + + GSM231975 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: X +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231975/GSM231975.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231975-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 409606 + + GSM231976 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231976/GSM231976.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231976-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 409608 + + GSM231977 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231977/GSM231977.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231977-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 409625 + + GSM231978 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +PSA: Elevated +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231978/GSM231978.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231978-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 409628 + + GSM231979 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231979/GSM231979.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231979-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 409630 + + GSM231980 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Primary Site: Ovary +Histology: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231980/GSM231980.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231980-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 415960 + + GSM231981 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231981/GSM231981.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231981-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 415961 + + GSM231982 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 46 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231982/GSM231982.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231982-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 415963 + + GSM231983 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231983/GSM231983.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231983-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 415970 + + GSM231984 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: Yes +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231984/GSM231984.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231984-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Thyroid - 415971 + + GSM231985 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231985/GSM231985.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231985-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 415976 + + GSM231986 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231986/GSM231986.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231986-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Rectum - 416801 + + GSM231987 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231987/GSM231987.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231987-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 416802 + + GSM231988 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Black tarry stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231988/GSM231988.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231988-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 416804 + + GSM231989 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 76 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231989/GSM231989.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231989-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 416811 + + GSM231990 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231990/GSM231990.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231990-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Soft tissue of thigh - 417511 + + GSM231991 + RNA + 1 + + Soft tissue of thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 1b +Pathological N: X +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Soft tissue of thigh +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231991/GSM231991.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231991-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 421723 + + GSM231992 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 41-45 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 26-30 +Pathological T: 2 +Pathological N: 0(i+) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231992/GSM231992.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231992-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-08-13 + + +Expression Project for Oncology (expO) + + GSE2109 + https://expo.intgen.org/geo/ + +The mission of expO is to build on the technologies and outcomes of the Human Genome Project to accelerate improved clinical management of cancer patients. + +IGC's Expression Project for Oncology (expO) seeks to integrate longitudinal clinical annotation with gene expression data for a unique and powerful portrait of human malignancies, providing critical perspective on diagnostic markers, prognostic indicators, and therapeutic targets. + +The goal of expO and its consortium supporters is to procure tissue samples under standard conditions and perform gene expression analyses on a clinically annotated set of deidentified tumor samples. The tumor data is updated with clinical outcomes and is released into the public domain without intellectual property restriction. + +Series-matrices are available at ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/SeriesMatrix/GSE2109/. + +For more information, see http://www.intgen.org/ + + + + cancer portraits + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSE2109_RAW.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM102424_GSM102424_batch6_30Mar2006.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM117576_GSM117777_batch7_07Jul06.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM137895_GSM138054_batch8_29Sep2006.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM152564_GSM152803_batch9_23Dec2006.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM179778_GSM179957_batch10_30Mar2007.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM203622_GSM203801_batch11_22Jun2007.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM231868_GSM231992_batch12_27Sep2007.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM38051_GSM38110_batch1_23Dec2004.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM46814_GSM46976_batch2_21Mar2005.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM53026_GSM53189_batch3_30Jun2005.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM76486_GSM76649_batch4_30Sep2005.tar + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE2109/GSM88945_GSM89104_batch5_22Dec2005.tar + + + + Index: /GSEXmlParser/GSE2109_family_04252008.xml =================================================================== --- /GSEXmlParser/GSE2109_family_04252008.xml (revision 38) +++ /GSEXmlParser/GSE2109_family_04252008.xml (revision 38) @@ -0,0 +1,140717 @@ + + + + + + MichaelBittner + mbittner@tgen.org + 602-343-8808 + 602-343-8440 + expO + IGC +
+ 445 N. 5th Street + Phoenix + AZ + 85004 + USA +
+ www.intgen.org + + + + + geo@ncbi.nlm.nih.gov, support@affymetrix.com + 888-362-2447 + Affymetrix, Inc. +
+ Santa Clara + CA + 95051 + USA +
+ http://www.affymetrix.com/index.affx + + + + Gene Expression Omnibus (GEO) + GEO + NCBI NLM NIH + http://www.ncbi.nlm.nih.gov/geo + geo@ncbi.nlm.nih.gov + + + + + 2003-11-07 + 2003-11-07 + 2007-11-02 + + +Affymetrix GeneChip Human Genome U133 Plus 2.0 Array + + GPL570 + in situ oligonucleotide + commercial + Homo sapiens + Affymetrix + +see manufacturer's web site + + +Complete coverage of the Human Genome U133 Set plus 6,500 additional genes for analysis of over 47,000 transcripts +All probe sets represented on the GeneChip Human Genome U133 Set are identically replicated on the GeneChip Human Genome U133 Plus 2.0 Array. The sequences from which these probe sets were derived were selected from GenBank®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 133, April 20, 2001) and then refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the University of California, Santa Cruz Golden-Path human genome database (April 2001 release). +In addition, there are 9,921 new probe sets representing approximately 6,500 new genes. These gene sequences were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from the UniGene database (Build 159, January 25, 2003) and refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the NCBI human genome assembly (Build 31). + + + http://www.affymetrix.com/support/technical/byproduct.affx?product=hg-u133-plus + http://www.affymetrix.com/analysis/index.affx + + + ID + Affymetrix Probe Set ID + https://www.affymetrix.com/LinkServlet?array=U133_PLUS&probeset= + + + GB_ACC + GenBank Accession Number + http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=Nucleotide&term= + + + SPOT_ID + identifies controls + + + Species Scientific Name + The genus and species of the organism represented by the probe set. + + + Annotation Date + The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site. + + + Sequence Type + + + Sequence Source + The database from which the sequence used to design this probe set was taken. + + + Target Description + + + Representative Public ID + The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used. + + + Gene Title + Title of Gene represented by the probe set. + + + Gene Symbol + A gene symbol, when one is available (from UniGene). + + + ENTREZ_GENE_ID + Entrez Gene Database UID + http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids= + + + RefSeq Transcript ID + References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet. + + + Gene Ontology Biological Process + Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended". + + + Gene Ontology Cellular Component + Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended". + + + Gene Ontology Molecular Function + Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended". + + +GPL570-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 13491 + + GSM38051 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Pathological T: 4b +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38051/GSM38051.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38051-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Corpus Uteri - 2045 + + GSM38052 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: 0-5 +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4B +Pathological Grade: X +Primary Site: Corpus Uteri +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38052/GSM38052.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38052-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Prostate - 2047 + + GSM38053 + RNA + 1 + + Prostate Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 106 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38053/GSM38053.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38053-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 2051 + + GSM38054 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Other +Ethnic Background: Hawaiian +Tobacco Use : No +Family History of Cancer?: No +Mammogram: Yes +Oral contraceptives?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38054/GSM38054.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38054-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 2471 + + GSM38055 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38055/GSM38055.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38055-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Spleen - 2475 + + GSM38056 + RNA + 1 + + Spleen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal mass +Retreatment T: 3c +Retreatment N: X +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38056/GSM38056.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38056-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 2477 + + GSM38057 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 43 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38057/GSM38057.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38057-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 2479 + + GSM38058 + RNA + 1 + + Bronchus & Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38058/GSM38058.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38058-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 2481 + + GSM38059 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38059/GSM38059.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38059-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 2483 + + GSM38060 + RNA + 1 + + Bronchus & Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 68 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38060/GSM38060.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38060-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 2485 + + GSM38061 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38061/GSM38061.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38061-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 3377 + + GSM38062 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 36 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38062/GSM38062.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38062-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8170 + + GSM38063 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 4b +Pathological N: 1a +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38063/GSM38063.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38063-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Ovary - 8172 + + GSM38064 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38064/GSM38064.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38064-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Omentum - 8174 + + GSM38065 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 142 +Prior Therapy: Chemotherapy +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38065/GSM38065.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38065-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Abdominal wall mass - 8176 + + GSM38066 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38066/GSM38066.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38066-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Uterus - 8180 + + GSM38067 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38067/GSM38067.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38067-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Small Bowel - 8182 + + GSM38068 + RNA + 1 + + Small bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Hormonal Treatment +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 1 +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Fallopian Tube +Histology: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38068/GSM38068.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38068-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Myometrium - 8184 + + GSM38069 + RNA + 1 + + Uterus, NOS + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Grade +Clinical Value: High +Clinical Question: Stage +Clinical Value: No AJCC scheme for this site and histology +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Epithelioid leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38069/GSM38069.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38069-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Omentum - 8186 + + GSM38070 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 105 +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 4 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary vs Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38070/GSM38070.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38070-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Peritoneum - 8188 + + GSM38071 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38071/GSM38071.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38071-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Adrenal gland - 8190 + + GSM38072 + RNA + 1 + + Adrenal gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Adrenals +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Lung +Histology: Metastatic Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38072/GSM38072.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38072-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Kidney - 8192 + + GSM38073 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38073/GSM38073.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38073-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8194 + + GSM38074 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38074/GSM38074.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38074-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8196 + + GSM38075 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38075/GSM38075.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38075-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2005-05-27 + + +Lymph Nodes - 8198 + + GSM38076 + RNA + 1 + + Lymph Nodes + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Primary Site: Lymph Nodes +Histology: Mature (peripheral) B-cell lymphoma +Patient Age: 50-60 +Ethnic Background: Caucasian +Sex: Male +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Tobacco Use : Yes +Presenting Symptoms: Lymphadenopathy +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Have you ever had mononucleousis?: No + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38076/GSM38076.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38076-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8200 + + GSM38077 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38077/GSM38077.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38077-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8202 + + GSM38078 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38078/GSM38078.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38078-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Prostate - 8206 + + GSM38079 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 11-15 +Cancer discovered by digital exam?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38079/GSM38079.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38079-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8208 + + GSM38080 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 59 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38080/GSM38080.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38080-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8210 + + GSM38081 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38081/GSM38081.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38081-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8212 + + GSM38082 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 70 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38082/GSM38082.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38082-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8214 + + GSM38083 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 37 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38083/GSM38083.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38083-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Uterus - 8216 + + GSM38084 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 4 +Pathological N: X +Pathological M: 0 +Pathological Stage: 4A +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38084/GSM38084.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38084-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Axillary Lymph Nodes - 8218 + + GSM38085 + RNA + 1 + + Axillary Lymph Nodes + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3b +Retreatment N: 0 +Retreatment M: 1a +Retreatment Metastatic Sites: Lymph Nodes +Retreatment Stage: 4 +Primary Site: Skin of Left Flank +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38085/GSM38085.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38085-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8220 + + GSM38086 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 0 +Pathological N: 0(i+) +Pathological M: 0 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38086/GSM38086.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38086-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Fallopian tube - 8224 + + GSM38087 + RNA + 1 + + Fallopian Tube + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological T: 3c +Pathological Grade: 3 +Primary Site: Fallopian tube +Histology: Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38087/GSM38087.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38087-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Ovary - 8226 + + GSM38088 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38088/GSM38088.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38088-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8228 + + GSM38089 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38089/GSM38089.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38089-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8230 + + GSM38090 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38090/GSM38090.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38090-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8232 + + GSM38091 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38091/GSM38091.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38091-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8234 + + GSM38092 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 26-30 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38092/GSM38092.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38092-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Omentum - 8236 + + GSM38093 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Primary Site: Unknown +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38093/GSM38093.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38093-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8238 + + GSM38094 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38094/GSM38094.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38094-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Omentum - 8240 + + GSM38095 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Hormonal Treatment +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 11-15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Peritoneum +Retreatment Stage: 4 +Retreatment Grade: 3 +Retreatment ER: Positive +Retreatment PR: Positive +Primary Site: Breast +Histology: Metastatic Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38095/GSM38095.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38095-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Rectum - 8242 + + GSM38096 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 119 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Barium enema +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38096/GSM38096.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38096-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Skin - 8244 + + GSM38097 + RNA + 1 + + Skin + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Primary Site: Skin of arm +Histology: Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38097/GSM38097.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38097-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8246 + + GSM38098 + RNA + 1 + + Rectosigmoid Junction + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38098/GSM38098.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38098-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8248 + + GSM38099 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38099/GSM38099.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38099-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 8250 + + GSM38100 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38100/GSM38100.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38100-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Stomach - 8252 + + GSM38101 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Clinical Question: Grade +Clinical Value: Low +Clinical Question: Stage +Clinical Value: No AJCC scheme for this site and histology +Primary Site: Stomach +Clinical Question: Histology +Clinical Value: Gastrointestinal stromal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38101/GSM38101.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38101-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8254 + + GSM38102 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38102/GSM38102.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38102-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 8256 + + GSM38103 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Persistent Cough +Pathological T: 2 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38103/GSM38103.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38103-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Lung - 8258 + + GSM38104 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 56 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38104/GSM38104.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38104-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8260 + + GSM38105 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38105/GSM38105.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38105-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8264 + + GSM38106 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 43 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38106/GSM38106.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38106-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Colon - 8266 + + GSM38107 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38107/GSM38107.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38107-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Liver - 8268 + + GSM38108 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Pathological T: 4 +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Vulva +Histology: Metastatic Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38108/GSM38108.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38108-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8270 + + GSM38109 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4b +Pathological N: 2a +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38109/GSM38109.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38109-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2007-10-09 + + +Breast - 8272 + + GSM38110 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM38nnn/GSM38110/GSM38110.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM38110-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 1003 + + GSM46814 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46814/GSM46814.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46814-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 1006 + + GSM46815 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46815/GSM46815.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46815-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 1017 + + GSM46816 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Clinical T: 1c +Clinical N: 1 +Clinical M: 0 +Clinical Stage: 2A +Clinical Grade: 3 +Clinical ER: Negative +Clinical PR: Negative +Clinical HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46816/GSM46816.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46816-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1020 + + GSM46817 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46817/GSM46817.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46817-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 1022 + + GSM46818 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Primary Site: Pelvic peritoneum +Histology: Metastatic Endometrial Stromal Sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46818/GSM46818.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46818-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Rectum - 1043 + + GSM46819 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 109 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46819/GSM46819.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46819-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 1048 + + GSM46820 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.41 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: None +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46820/GSM46820.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46820-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1057 + + GSM46821 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for Unknown Primary +Primary Site: Unknown +Clinical Question: Histology +Clinical Value: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46821/GSM46821.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46821-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Abdominal Mass - 1060 + + GSM46822 + RNA + 1 + + Abdominal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Pathological T: 3a +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Corpus Uteri +Histology: Metastatic Malignant mixed mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46822/GSM46822.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46822-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 1293 + + GSM46823 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46823/GSM46823.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46823-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1299 + + GSM46824 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46824/GSM46824.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46824-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 1304 + + GSM46825 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46825/GSM46825.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46825-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 1306 + + GSM46826 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46826/GSM46826.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46826-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 1307 + + GSM46827 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 27 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Negative +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal and Lobular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46827/GSM46827.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46827-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Liver or Omentum - 1308 + + GSM46828 + RNA + 1 + + Liver or Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46828/GSM46828.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46828-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Pelvic Lymph Node - 1310 + + GSM46829 + RNA + 1 + + Pelvic lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological T: 4a +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46829/GSM46829.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46829-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1311 + + GSM46830 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46830/GSM46830.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46830-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1313 + + GSM46831 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46831/GSM46831.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46831-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 1315 + + GSM46832 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: is +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 0 +Primary Site: Colon +Histology: Carcinoma in situ arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46832/GSM46832.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46832-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1316 + + GSM46833 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: Yes +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46833/GSM46833.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46833-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 1319 + + GSM46834 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46834/GSM46834.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46834-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Abdominal wall mass - 1321 + + GSM46835 + RNA + 1 + + Abdominal wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3a +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46835/GSM46835.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46835-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 1322 + + GSM46836 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Mammogram calcifications?: Yes +Primary Site: Breast +Histology: Intraductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46836/GSM46836.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46836-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Prostate - 1324 + + GSM46837 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46837/GSM46837.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46837-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +R adnexa or metastatic transverse colon nodule - 1350 + + GSM46838 + RNA + 1 + + R adnexa or metastatic transverse colon nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46838/GSM46838.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46838-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1351 + + GSM46839 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46839/GSM46839.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46839-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 1353 + + GSM46840 + RNA + 1 + + L Adnexa + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46840/GSM46840.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46840-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 1354 + + GSM46841 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46841/GSM46841.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46841-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Paracolic gutter - 1355 + + GSM46842 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46842/GSM46842.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46842-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1502 + + GSM46843 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46843/GSM46843.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46843-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 1503 + + GSM46844 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Grade: 2 +Primary Site: Bladder +Histology: Metastatic non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46844/GSM46844.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46844-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2006-01-10 + + +Colon - 2049 + + GSM46845 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.01 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Screening studies performed?: No +Diagnosis made by: Sigmoidoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46845/GSM46845.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46845-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 21808 + + GSM46846 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 27 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46846/GSM46846.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46846-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 22198 + + GSM46847 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 65 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46847/GSM46847.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46847-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Liver - 22202 + + GSM46848 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: X +Primary Site: Exocrine Pancreas +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46848/GSM46848.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46848-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22204 + + GSM46849 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46849/GSM46849.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46849-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 22208 + + GSM46850 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46850/GSM46850.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46850-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ileum - 22212 + + GSM46851 + RNA + 1 + + Ileum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Primary Site: Cervix Uteri +Histology: Metastatic Squamous Cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46851/GSM46851.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46851-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22214 + + GSM46852 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46852/GSM46852.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46852-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 22218 + + GSM46853 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46853/GSM46853.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46853-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterus - 22220 + + GSM46854 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.06 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46854/GSM46854.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46854-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22223 + + GSM46855 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46855/GSM46855.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46855-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Rectosigmoid - 22225 + + GSM46856 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.32 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 31 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46856/GSM46856.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46856-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 22227 + + GSM46857 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.23 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Stool blood test (guiac) +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46857/GSM46857.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46857-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 22229 + + GSM46858 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46858/GSM46858.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46858-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22233 + + GSM46859 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46859/GSM46859.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46859-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Lung - 22235 + + GSM46860 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.37 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46860/GSM46860.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46860-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 22237 + + GSM46861 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46861/GSM46861.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46861-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22239 + + GSM46862 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46862/GSM46862.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46862-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22241 + + GSM46863 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46863/GSM46863.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46863-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 22245 + + GSM46864 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46864/GSM46864.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46864-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 22247 + + GSM46865 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Black tarry stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46865/GSM46865.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46865-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Prostate - 22249 + + GSM46866 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +PSA: Elevated +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46866/GSM46866.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46866-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Uterus - 22251 + + GSM46867 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3a +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46867/GSM46867.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46867-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Lung - 22255 + + GSM46868 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.52 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46868/GSM46868.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46868-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 22259 + + GSM46869 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.69 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46869/GSM46869.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46869-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22263 + + GSM46870 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46870/GSM46870.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46870-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 22269 + + GSM46871 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 31-35 +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: X +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46871/GSM46871.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46871-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Bladder or Kidney - 22273 + + GSM46872 + RNA + 1 + + Urinary Tract, NOS + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Clinical Question: Stage +Clinical Value: No AJCC scheme for unknown primary +Clinical Question: Grade +Clinical Value: 2 +Primary Site: Urinary tract, NOS +Clinical Question: Histology +Clinical Value: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46872/GSM46872.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46872-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 2323 + + GSM46873 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46873/GSM46873.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46873-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 2324 + + GSM46874 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46874/GSM46874.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46874-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 23864 + + GSM46875 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 76 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46875/GSM46875.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46875-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 23866 + + GSM46876 + RNA + 1 + + Uterine Serosa + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal pain +Clinical Grade: 3 +Primary Site: Peritoneum +Histology: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46876/GSM46876.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46876-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 23876 + + GSM46877 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.42 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46877/GSM46877.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46877-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 23880 + + GSM46878 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46878/GSM46878.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46878-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Rectum - 23882 + + GSM46879 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2A +Retreatment Grade: 2 +Retreatment Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46879/GSM46879.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46879-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23886 + + GSM46880 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46880/GSM46880.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46880-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 23888 + + GSM46881 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46881/GSM46881.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46881-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 23896 + + GSM46882 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46882/GSM46882.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46882-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23898 + + GSM46883 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46883/GSM46883.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46883-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 23900 + + GSM46884 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46884/GSM46884.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46884-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23902 + + GSM46885 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46885/GSM46885.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46885-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 23904 + + GSM46886 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 1 +Primary Site: Ovary +Histology: Benign serous cystadenoma of borderline malignancy + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46886/GSM46886.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46886-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 23908 + + GSM46887 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46887/GSM46887.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46887-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 23910 + + GSM46888 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Presenting Symptoms: Abdominal pain +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46888/GSM46888.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46888-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Renal Pelvis - 23912 + + GSM46889 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Primary Site: Renal Pelvis +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46889/GSM46889.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46889-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23914 + + GSM46890 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 31-35 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46890/GSM46890.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46890-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23916 + + GSM46891 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46891/GSM46891.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46891-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 23918 + + GSM46892 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46892/GSM46892.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46892-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23920 + + GSM46893 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46893/GSM46893.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46893-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23922 + + GSM46894 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46894/GSM46894.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46894-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 23924 + + GSM46895 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46895/GSM46895.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46895-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterus - 23932 + + GSM46896 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.36 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46896/GSM46896.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46896-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 23936 + + GSM46897 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Vaginal bleeding +Pathological T: 2b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid adenocarcinoma with sguamous metaplasia + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46897/GSM46897.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46897-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 23938 + + GSM46898 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46898/GSM46898.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46898-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 23940 + + GSM46899 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46899/GSM46899.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46899-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 23944 + + GSM46900 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.53 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma In-situ (DCIS) with focal Comedo Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46900/GSM46900.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46900-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Rectosigmoid Colon - 23946 + + GSM46901 + RNA + 1 + + Rectosigmoid Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.51 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46901/GSM46901.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46901-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Omentum - 23948 + + GSM46902 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.32 +Patient Age: 60-70 +Gender: Female +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 210 +Prior Therapy: Chemotherapy +Primary Site: Unknown +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46902/GSM46902.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46902-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 23950 + + GSM46903 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: GI Tract, NOS +Clinical Question: Histology +Clinical Value: Metastatic Mucinous adenocarcinoma consistent with gastrointestinal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46903/GSM46903.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46903-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-29 + + +Lung - 23952 + + GSM46904 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.47 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46904/GSM46904.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46904-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 23954 + + GSM46905 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.66 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46905/GSM46905.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46905-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Omentum - 23956 + + GSM46906 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.26 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Primary Site: Fallopian Tube +Histology: Metastatic Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46906/GSM46906.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46906-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Peritoneum - 23960 + + GSM46907 + RNA + 1 + + Soft Tissue Abdominal Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Retreatment Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46907/GSM46907.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46907-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 23975 + + GSM46908 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46908/GSM46908.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46908-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2006-01-10 + + +Lung - 2491 + + GSM46909 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.47 +Gender: Female +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46909/GSM46909.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46909-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Ovary - 29227 + + GSM46910 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.57 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46910/GSM46910.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46910-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 29229 + + GSM46911 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme +Clinical Question: Grade +Clinical Value: 1 +Primary Site: Ovary +Clinical Question: Histology +Clinical Value: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46911/GSM46911.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46911-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Uterus - 29231 + + GSM46912 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46912/GSM46912.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46912-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 29233 + + GSM46913 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46913/GSM46913.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46913-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterus - 29239 + + GSM46914 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.72 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46914/GSM46914.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46914-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 29241 + + GSM46915 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.42 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46915/GSM46915.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46915-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Perihepatic Mass - 29243 + + GSM46916 + RNA + 1 + + Perihepatic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46916/GSM46916.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46916-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-29 + + +Small Intestine - 29247 + + GSM46917 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.81 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: Yes +Primary Site: Small Intestine +Histology: Metastatic Follicular Lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46917/GSM46917.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46917-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Ovary - 29249 + + GSM46918 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46918/GSM46918.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46918-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Cervix Uteri - 29251 + + GSM46919 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, verrucous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46919/GSM46919.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46919-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Bladder - 29253 + + GSM46920 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.57 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Primary Site: Bladder +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46920/GSM46920.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46920-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 29255 + + GSM46921 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46921/GSM46921.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46921-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Peritoneum - 29257 + + GSM46922 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.29 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46922/GSM46922.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46922-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterine Corpus - 29259 + + GSM46923 + RNA + 1 + + Uterine Corpus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.31 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46923/GSM46923.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46923-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 29263 + + GSM46924 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.33 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46924/GSM46924.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46924-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 29265 + + GSM46925 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bloating +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46925/GSM46925.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46925-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Corpus uteri - 29269 + + GSM46926 + RNA + 1 + + Corpus uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Ewing's sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46926/GSM46926.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46926-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Uterus - 29275 + + GSM46927 + RNA + 1 + + Uterine Corpus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46927/GSM46927.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46927-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 29277 + + GSM46928 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Workplace or household smokers?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Primary Site: Lung +Histology: Mucoepidermoid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46928/GSM46928.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46928-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 29279 + + GSM46929 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46929/GSM46929.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46929-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 29287 + + GSM46930 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46930/GSM46930.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46930-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 29291 + + GSM46931 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46931/GSM46931.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46931-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Abdominal Wall Fascia - 29293 + + GSM46932 + RNA + 1 + + Abdominal wall fascia + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4B +Retreatment Grade: 2 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46932/GSM46932.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46932-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 29303 + + GSM46933 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46933/GSM46933.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46933-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 29313 + + GSM46934 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.37 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46934/GSM46934.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46934-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Omentum - 31810 + + GSM46935 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46935/GSM46935.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46935-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 31812 + + GSM46936 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46936/GSM46936.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46936-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Uterine Corpus - 31814 + + GSM46937 + RNA + 1 + + Uterine Corpus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.22 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46937/GSM46937.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46937-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31816 + + GSM46938 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.45 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Primary Site: Breast +Histology: Metaplastic Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46938/GSM46938.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46938-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 31818 + + GSM46939 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46939/GSM46939.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46939-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 31820 + + GSM46940 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.51 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46940/GSM46940.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46940-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Lung - 31822 + + GSM46941 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.34 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: Yes +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46941/GSM46941.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46941-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Cervix - 31824 + + GSM46942 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46942/GSM46942.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46942-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Uterus - 31826 + + GSM46943 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46943/GSM46943.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46943-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 31828 + + GSM46944 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46944/GSM46944.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46944-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Liver - 31830 + + GSM46945 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 51 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46945/GSM46945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46945-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Adrenal Gland - 31832 + + GSM46946 + RNA + 1 + + Adrenal gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Adrenals +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46946/GSM46946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46946-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31834 + + GSM46947 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.58 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: None +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46947/GSM46947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46947-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Ovary - 31836 + + GSM46948 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.58 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46948/GSM46948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46948-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Endometrium - 31840 + + GSM46949 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.53 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46949/GSM46949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46949-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Ovary - 31842 + + GSM46950 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.22 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Dysgerminoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46950/GSM46950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46950-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +R thigh mass - 31846 + + GSM46951 + RNA + 1 + + R thigh mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Radiation +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Sarcoma +Histology: Malignant fibrous histiocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46951/GSM46951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46951-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31861 + + GSM46952 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46952/GSM46952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46952-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31865 + + GSM46953 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.55 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Number of years of use? (Oral contraceptives): None +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: None +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46953/GSM46953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46953-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31867 + + GSM46954 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.35 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46954/GSM46954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46954-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31871 + + GSM46955 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.56 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46955/GSM46955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46955-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Colon - 31877 + + GSM46956 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.14 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46956/GSM46956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46956-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Kidney - 31879 + + GSM46957 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.64 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46957/GSM46957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46957-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 31881 + + GSM46958 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.03 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46958/GSM46958.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46958-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 31901 + + GSM46959 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 36-40 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46959/GSM46959.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46959-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 31903 + + GSM46960 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Lung +Histology: Adenosquamous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46960/GSM46960.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46960-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 31907 + + GSM46961 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 66-70 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 63 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Papillary adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46961/GSM46961.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46961-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Breast - 37977 + + GSM46962 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.24 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46962/GSM46962.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46962-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 4192 + + GSM46963 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Radiation +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46963/GSM46963.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46963-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 4197 + + GSM46964 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46964/GSM46964.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46964-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Kidney - 4202 + + GSM46965 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 26 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46965/GSM46965.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46965-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Ovary - 8178 + + GSM46966 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46966/GSM46966.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46966-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Colon - 8204 + + GSM46967 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 34 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46967/GSM46967.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46967-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 8222 + + GSM46968 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46968/GSM46968.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46968-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Rectosigmoid - 8262 + + GSM46969 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.45 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 300 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46969/GSM46969.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46969-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2005-05-27 + + +Liver - 8274 + + GSM46970 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.14 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 300 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Rectosigmoid +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46970/GSM46970.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46970-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Liver - 8276 + + GSM46971 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46971/GSM46971.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46971-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Rectosigmoid - 8278 + + GSM46972 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46972/GSM46972.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46972-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 8280 + + GSM46973 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46973/GSM46973.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46973-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Breast - 8282 + + GSM46974 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46974/GSM46974.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46974-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 8284 + + GSM46975 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Lung +Histology: Mucin-producing adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46975/GSM46975.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46975-tbl-1.txt + + + + + + + 2005-03-31 + 2005-03-31 + 2007-10-09 + + +Lung - 8290 + + GSM46976 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM46nnn/GSM46976/GSM46976.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM46976-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Mesenteric Lymph Node - 1002 + + GSM53026 + RNA + 1 + + Mesenteric Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53026/GSM53026.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53026-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 1008 + + GSM53027 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 36-40 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53027/GSM53027.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53027-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Breast - 1009 + + GSM53028 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53028/GSM53028.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53028-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1018 + + GSM53029 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53029/GSM53029.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53029-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Bladder - 1019 + + GSM53030 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Primary Site: Bladder +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53030/GSM53030.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53030-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1025 + + GSM53031 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53031/GSM53031.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53031-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 1032 + + GSM53032 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53032/GSM53032.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53032-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1033 + + GSM53033 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 26-30 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53033/GSM53033.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53033-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1034 + + GSM53034 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 16-20 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53034/GSM53034.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53034-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1035 + + GSM53035 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53035/GSM53035.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53035-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1040 + + GSM53036 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53036/GSM53036.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53036-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Omentum - 1041 + + GSM53037 + RNA + 1 + + Abdominal wall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: X +Primary Site: Exocrine Pancreas +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53037/GSM53037.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53037-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Lymph Node - 1042 + + GSM53038 + RNA + 1 + + Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Lymphadenopathy +Presenting Symptoms: Night sweats +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53038/GSM53038.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53038-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Stomach - 1049 + + GSM53039 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Primary Site: Stomach +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53039/GSM53039.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53039-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Omentum - 1059 + + GSM53040 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53040/GSM53040.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53040-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Small intestine - 1222 + + GSM53041 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Corpus Uteri +Clinical Question: Histology +Clinical Value: Metastatic Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53041/GSM53041.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53041-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Uterine Cervix - 1223 + + GSM53042 + RNA + 1 + + Uterine Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Primary Site: Uterine Cervix +Histology: Squamous Cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53042/GSM53042.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53042-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Kidney - 1225 + + GSM53043 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 29 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53043/GSM53043.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53043-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Small intestine - 1226 + + GSM53044 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this site/histology +Clinical Question: T +Clinical Value: Tumor size is 1cm-2cm +Clinical Question: N +Clinical Value: Lymph nodes positive +Clinical Question: M +Clinical Value: No distant metastatic disease +Primary Site: Small intestine +Clinical Question: Histology +Clinical Value: Neuroendocrine carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53044/GSM53044.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53044-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1228 + + GSM53045 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53045/GSM53045.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53045-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Pancreas - 1229 + + GSM53046 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 100 +Clinical Question: Histology +Clinical Value: Non-functional islet cell tumor +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme For this Histology/Site +Primary Site: Pancreas + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53046/GSM53046.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53046-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1232 + + GSM53047 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53047/GSM53047.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53047-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Soft tissue of abdomen - 1233 + + GSM53048 + RNA + 1 + + Soft tissue of abdomen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Primary Site: Soft Tissue of abdomen +Histology: Liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53048/GSM53048.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53048-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Omentum - 1235 + + GSM53049 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Peritoneum +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53049/GSM53049.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53049-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Uterus - 1236 + + GSM53050 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Sarcoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53050/GSM53050.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53050-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1237 + + GSM53051 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma In situ + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53051/GSM53051.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53051-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 1239 + + GSM53052 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53052/GSM53052.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53052-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1240 + + GSM53053 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 33 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53053/GSM53053.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53053-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1241 + + GSM53054 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53054/GSM53054.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53054-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Colon - 1259 + + GSM53055 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53055/GSM53055.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53055-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1270 + + GSM53056 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53056/GSM53056.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53056-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 1271 + + GSM53057 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53057/GSM53057.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53057-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1272 + + GSM53058 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53058/GSM53058.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53058-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 1290 + + GSM53059 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53059/GSM53059.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53059-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 1296 + + GSM53060 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53060/GSM53060.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53060-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Prostate - 1317 + + GSM53061 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 57 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: Yes +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53061/GSM53061.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53061-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 1320 + + GSM53062 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53062/GSM53062.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53062-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1323 + + GSM53063 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53063/GSM53063.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53063-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 1633 + + GSM53064 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Radiation +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53064/GSM53064.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53064-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1634 + + GSM53065 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53065/GSM53065.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53065-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1636 + + GSM53066 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Primary Site: Unknown +Histology: Metastatic Malignant Neoplasm, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53066/GSM53066.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53066-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1637 + + GSM53067 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53067/GSM53067.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53067-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1639 + + GSM53068 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53068/GSM53068.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53068-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 1643 + + GSM53069 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53069/GSM53069.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53069-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1646 + + GSM53070 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Undifferentiated Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53070/GSM53070.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53070-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ureter - 1647 + + GSM53071 + RNA + 1 + + Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Primary Site: Ureter +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53071/GSM53071.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53071-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +R hip/buttock mass - 1654 + + GSM53072 + RNA + 1 + + R hip/buttock mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Soft Tissue of buttock +Histology: Chondrosarcoma, extraskeletal + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53072/GSM53072.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53072-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 1655 + + GSM53073 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53073/GSM53073.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53073-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Thyroid - 1657 + + GSM53074 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53074/GSM53074.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53074-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 1659 + + GSM53075 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53075/GSM53075.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53075-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 20295 + + GSM53076 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53076/GSM53076.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53076-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 20296 + + GSM53077 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53077/GSM53077.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53077-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 20308 + + GSM53078 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53078/GSM53078.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53078-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 20309 + + GSM53079 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53079/GSM53079.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53079-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-02 + + +Breast - 22196 + + GSM53080 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53080/GSM53080.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53080-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 22210 + + GSM53081 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 180 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53081/GSM53081.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53081-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Omentum - 22216 + + GSM53082 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53082/GSM53082.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53082-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 22231 + + GSM53083 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53083/GSM53083.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53083-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 22253 + + GSM53084 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53084/GSM53084.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53084-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Vulva - 22257 + + GSM53085 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological T: 2 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Vulva +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53085/GSM53085.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53085-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 22271 + + GSM53086 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 33 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Number of years of use? (Oral contraceptives): None +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53086/GSM53086.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53086-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Rectosigmoid - 2310 + + GSM53087 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53087/GSM53087.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53087-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Liver - 2311 + + GSM53088 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: Yes +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53088/GSM53088.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53088-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2312 + + GSM53089 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Number of years of use? (Oral contraceptives): None +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Hormonal therapy (# of Years)?: 11-15 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53089/GSM53089.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53089-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Liver - 2313 + + GSM53090 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: Yes +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53090/GSM53090.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53090-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2314 + + GSM53091 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53091/GSM53091.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53091-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 2316 + + GSM53092 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53092/GSM53092.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53092-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Corpus Uteri - 2317 + + GSM53093 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53093/GSM53093.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53093-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2319 + + GSM53094 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53094/GSM53094.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53094-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2321 + + GSM53095 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53095/GSM53095.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53095-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2322 + + GSM53096 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53096/GSM53096.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53096-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Bladder - 2328 + + GSM53097 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Primary Site: Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53097/GSM53097.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53097-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 23862 + + GSM53098 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53098/GSM53098.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53098-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 23874 + + GSM53099 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53099/GSM53099.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53099-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 23884 + + GSM53100 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 4 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53100/GSM53100.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53100-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Lymph Node - 23906 + + GSM53101 + RNA + 1 + + Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Lymphadenopathy +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53101/GSM53101.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53101-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 23926 + + GSM53102 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53102/GSM53102.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53102-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 23928 + + GSM53103 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53103/GSM53103.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53103-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 23930 + + GSM53104 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Primary Site: Ovary +Histology: Mucinous cystic tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53104/GSM53104.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53104-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 23934 + + GSM53105 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53105/GSM53105.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53105-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Colon - 23958 + + GSM53106 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53106/GSM53106.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53106-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 2495 + + GSM53107 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Oral contraceptives?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53107/GSM53107.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53107-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 29235 + + GSM53108 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53108/GSM53108.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53108-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 29237 + + GSM53109 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53109/GSM53109.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53109-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 29245 + + GSM53110 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Relapse Since Primary Treatment: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53110/GSM53110.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53110-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Colon - 29267 + + GSM53111 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Retreatment T: 4 +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 4A +Retreatment Grade: X +Primary Site: Endometrium +Histology: Metastatic Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53111/GSM53111.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53111-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Cervix - 29273 + + GSM53112 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Primary Site: Cervix +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53112/GSM53112.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53112-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Colon - 29281 + + GSM53113 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53113/GSM53113.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53113-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Prostate - 29283 + + GSM53114 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53114/GSM53114.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53114-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 29285 + + GSM53115 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4b +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53115/GSM53115.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53115-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Soft Tissue of Knee - 29289 + + GSM53116 + RNA + 1 + + Soft Tissue of Knee + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Primary Site: Soft Tissue of Knee +Histology: Ewings sarcoma/primitive neuroectodermal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53116/GSM53116.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53116-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Urinary Bladder - 29295 + + GSM53117 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53117/GSM53117.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53117-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 29299 + + GSM53118 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Carcinoid tumor with atypical features + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53118/GSM53118.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53118-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Corpus Uteri - 29301 + + GSM53119 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53119/GSM53119.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53119-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Uterus - 29305 + + GSM53120 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53120/GSM53120.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53120-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Ovary - 29308 + + GSM53121 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Have you ever had esophagitis/reflux?: Yes +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Metastatic Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53121/GSM53121.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53121-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 29311 + + GSM53122 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 49 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53122/GSM53122.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53122-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 31838 + + GSM53123 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53123/GSM53123.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53123-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 31848 + + GSM53124 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53124/GSM53124.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53124-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Omentum - 31850 + + GSM53125 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53125/GSM53125.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53125-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Colon - 31852 + + GSM53126 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53126/GSM53126.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53126-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 31869 + + GSM53127 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53127/GSM53127.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53127-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 31873 + + GSM53128 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Years of Tobacco Use: None +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53128/GSM53128.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53128-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Pelvic Tumor - 31875 + + GSM53129 + RNA + 1 + + Pelvic Tumor + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53129/GSM53129.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53129-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 31887 + + GSM53130 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53130/GSM53130.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53130-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 31893 + + GSM53131 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 37 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53131/GSM53131.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53131-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Rectosigmoid - 31895 + + GSM53132 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53132/GSM53132.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53132-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 31905 + + GSM53133 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53133/GSM53133.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53133-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 31909 + + GSM53134 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53134/GSM53134.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53134-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 3750 + + GSM53135 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53135/GSM53135.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53135-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 3751 + + GSM53136 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53136/GSM53136.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53136-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Bladder - 3753 + + GSM53137 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 1 +Pathological M: X +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53137/GSM53137.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53137-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Soft Tissue of Abdomen - 3754 + + GSM53138 + RNA + 1 + + Soft tissue of Abdomen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bloating +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53138/GSM53138.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53138-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Bladder - 3756 + + GSM53139 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Primary Site: Urinary Bladder +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53139/GSM53139.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53139-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Vaginal Wall - 3758 + + GSM53140 + RNA + 1 + + Vaginal Wall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Retreatment T: 4 +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 4A +Retreatment Grade: X +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53140/GSM53140.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53140-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 3760 + + GSM53141 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53141/GSM53141.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53141-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 3761 + + GSM53142 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53142/GSM53142.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53142-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 3762 + + GSM53143 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53143/GSM53143.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53143-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 3763 + + GSM53144 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Pathological T: 3c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53144/GSM53144.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53144-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Cervix - 3764 + + GSM53145 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Primary Site: Cervix +Histology: Squamous Cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53145/GSM53145.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53145-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 3765 + + GSM53146 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53146/GSM53146.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53146-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 3766 + + GSM53147 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53147/GSM53147.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53147-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 3767 + + GSM53148 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53148/GSM53148.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53148-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 3768 + + GSM53149 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53149/GSM53149.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53149-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 4194 + + GSM53150 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53150/GSM53150.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53150-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 4195 + + GSM53151 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Vaginal bleeding +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53151/GSM53151.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53151-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Prostate - 4196 + + GSM53152 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Prior Therapy: Hormonal Treatment +Presenting Symptoms: Dribbling +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53152/GSM53152.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53152-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 4201 + + GSM53153 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53153/GSM53153.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53153-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Kidney - 4203 + + GSM53154 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53154/GSM53154.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53154-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Endometrium - 4204 + + GSM53155 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53155/GSM53155.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53155-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 4214 + + GSM53156 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53156/GSM53156.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53156-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ileum - 4215 + + GSM53157 + RNA + 1 + + Ileum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +Primary Site: Ileum +Histology: Malignant carcinoid tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53157/GSM53157.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53157-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Tongue - 4216 + + GSM53158 + RNA + 1 + + Tongue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 1 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Tongue +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53158/GSM53158.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53158-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 4219 + + GSM53159 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53159/GSM53159.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53159-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 4226 + + GSM53160 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53160/GSM53160.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53160-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 4227 + + GSM53161 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53161/GSM53161.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53161-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Prostate - 4337 + + GSM53162 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 165 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53162/GSM53162.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53162-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 4342 + + GSM53163 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53163/GSM53163.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53163-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Uterus - 4344 + + GSM53164 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 44 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53164/GSM53164.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53164-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 4346 + + GSM53165 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53165/GSM53165.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53165-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Omentum - 4347 + + GSM53166 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53166/GSM53166.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53166-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Lung - 4451 + + GSM53167 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53167/GSM53167.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53167-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Rectum - 4610 + + GSM53168 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53168/GSM53168.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53168-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Colon - 5150 + + GSM53169 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53169/GSM53169.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53169-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Lung - 5225 + + GSM53170 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53170/GSM53170.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53170-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Kidney - 5227 + + GSM53171 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53171/GSM53171.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53171-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Breast - 5228 + + GSM53172 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 4d +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53172/GSM53172.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53172-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 5230 + + GSM53173 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Pathological T: 3c +Pathological N: 1 +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53173/GSM53173.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53173-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Uterus - 5231 + + GSM53174 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Adenosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53174/GSM53174.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53174-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Omentum - 5232 + + GSM53175 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53175/GSM53175.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53175-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Uterus - 5233 + + GSM53176 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 2a +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53176/GSM53176.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53176-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 5234 + + GSM53177 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: X +Primary Site: Stomach +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53177/GSM53177.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53177-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Colon - 5237 + + GSM53178 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53178/GSM53178.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53178-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Uterus - 5240 + + GSM53179 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53179/GSM53179.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53179-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 5242 + + GSM53180 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Primary Site: Ovary +Histology: Clear cell adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53180/GSM53180.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53180-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Vulva - 5243 + + GSM53181 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Primary Site: Vulva +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53181/GSM53181.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53181-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-08-01 + + +Renal Pelvis - 5244 + + GSM53182 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Pathological T: 3 +Pathological N: 2 +Pathological M: X +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Renal Pelvis +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53182/GSM53182.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53182-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Small Intestine - 6290 + + GSM53183 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53183/GSM53183.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53183-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 6291 + + GSM53184 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53184/GSM53184.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53184-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Ovary - 6296 + + GSM53185 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53185/GSM53185.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53185-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Ovary - 7002 + + GSM53186 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53186/GSM53186.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53186-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2005-06-30 + + +Breast - 7530 + + GSM53187 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53187/GSM53187.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53187-tbl-1.txt + + + + + + + 2005-06-30 + 2005-07-01 + 2007-10-09 + + +Renal Pelvis - 8286 + + GSM53188 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Renal Pelvis +Clinical Question: Histology +Clinical Value: Oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53188/GSM53188.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53188-tbl-1.txt + + + + + + + 2005-07-01 + 2005-07-01 + 2005-07-01 + + +Endometrium - 4349 + + GSM53189 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM53nnn/GSM53189/GSM53189.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM53189-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 1005 + + GSM76486 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76486/GSM76486.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76486-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 1039 + + GSM76487 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Pathological T: 1b +Pathological N: 0 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76487/GSM76487.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76487-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 20275 + + GSM76488 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 75 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76488/GSM76488.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76488-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20284 + + GSM76489 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76489/GSM76489.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76489-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 20286 + + GSM76490 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76490/GSM76490.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76490-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20290 + + GSM76491 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76491/GSM76491.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76491-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20291 + + GSM76492 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76492/GSM76492.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76492-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20292 + + GSM76493 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76493/GSM76493.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76493-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Stomach - 20293 + + GSM76494 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Have you ever had esophagitis/reflux?: Yes +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76494/GSM76494.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76494-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20294 + + GSM76495 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76495/GSM76495.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76495-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Urethral Nodule - 20300 + + GSM76496 + RNA + 1 + + Urethral Nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 29 +Prior Therapy: Hormonal Treatment +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76496/GSM76496.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76496-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20301 + + GSM76497 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76497/GSM76497.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76497-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Liver - 20302 + + GSM76498 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Clinical Question: Histology +Clinical Value: Intrahepatic Cholangiocarcinoma +Clinical Question: T +Clinical Value: 1 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 1 +Clinical Question: Grade +Clinical Value: 2 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage During or Following Multimodality Theraphy +Clinical Value: No +Primary Site: Liver + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76498/GSM76498.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76498-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 20303 + + GSM76499 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76499/GSM76499.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76499-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20307 + + GSM76500 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 75 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76500/GSM76500.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76500-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 20310 + + GSM76501 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76501/GSM76501.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76501-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 20311 + + GSM76502 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76502/GSM76502.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76502-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 20313 + + GSM76503 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 4 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76503/GSM76503.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76503-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20315 + + GSM76504 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma, endometrioid and papillary serous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76504/GSM76504.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76504-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Soft Tissue Lt Shoulder/Arm - 20317 + + GSM76505 + RNA + 1 + + Soft Tissue L Upper Arm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Soft Tissue Sarcoma +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76505/GSM76505.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76505-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Duodenum - 20318 + + GSM76506 + RNA + 1 + + Duodenum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Duodenum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76506/GSM76506.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76506-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 20319 + + GSM76507 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 56 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76507/GSM76507.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76507-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 20320 + + GSM76508 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 55 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76508/GSM76508.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76508-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20323 + + GSM76509 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76509/GSM76509.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76509-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20325 + + GSM76510 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76510/GSM76510.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76510-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 20326 + + GSM76511 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76511/GSM76511.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76511-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 20327 + + GSM76512 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Retreatment T: 4 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76512/GSM76512.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76512-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Uterine/Bladder Tumor - 20328 + + GSM76513 + RNA + 1 + + Uterine/Bladder Tumor + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 4 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 4A +Retreatment Grade: 3 +Primary Site: Uterine/Bladder Tumor +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76513/GSM76513.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76513-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 20459 + + GSM76514 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76514/GSM76514.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76514-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 20463 + + GSM76515 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76515/GSM76515.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76515-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 20464 + + GSM76516 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76516/GSM76516.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76516-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 21633 + + GSM76517 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76517/GSM76517.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76517-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 21634 + + GSM76518 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76518/GSM76518.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76518-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21637 + + GSM76519 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76519/GSM76519.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76519-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21638 + + GSM76520 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 75 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76520/GSM76520.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76520-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 21650 + + GSM76521 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 31-35 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76521/GSM76521.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76521-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21651 + + GSM76522 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76522/GSM76522.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76522-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Soft tissue of shoulder - 21655 + + GSM76523 + RNA + 1 + + Soft tissue of shoulder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Primary Site: Melanoma of Skin +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76523/GSM76523.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76523-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21659 + + GSM76524 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76524/GSM76524.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76524-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 21750 + + GSM76525 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Mixed endometrioid and serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76525/GSM76525.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76525-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21751 + + GSM76526 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76526/GSM76526.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76526-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 21752 + + GSM76527 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76527/GSM76527.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76527-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 21753 + + GSM76528 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 1b +Pathological N: 0(i-) +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76528/GSM76528.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76528-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21754 + + GSM76529 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76529/GSM76529.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76529-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21755 + + GSM76530 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 90-100 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76530/GSM76530.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76530-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21756 + + GSM76531 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Colloid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76531/GSM76531.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76531-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Urinary Bladder - 21757 + + GSM76532 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Primary Site: Urinary Bladder +Histology: Papillary Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76532/GSM76532.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76532-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 21758 + + GSM76533 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76533/GSM76533.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76533-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ureterovesicle junction - 21759 + + GSM76534 + RNA + 1 + + Ureterovesicle junction + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Ureterovesicle junction +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76534/GSM76534.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76534-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Uterus - 21760 + + GSM76535 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76535/GSM76535.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76535-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Uterus - 21762 + + GSM76536 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76536/GSM76536.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76536-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21763 + + GSM76537 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76537/GSM76537.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76537-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 21764 + + GSM76538 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76538/GSM76538.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76538-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21765 + + GSM76539 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76539/GSM76539.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76539-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21766 + + GSM76540 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76540/GSM76540.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76540-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Vulva - 21767 + + GSM76541 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Basal Cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76541/GSM76541.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76541-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21771 + + GSM76542 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76542/GSM76542.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76542-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 21772 + + GSM76543 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: X +Clinical M: 1 +Clinical Metastatic Sites: Osseous +Clinical Stage: 4 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76543/GSM76543.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76543-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 21773 + + GSM76544 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76544/GSM76544.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76544-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 21949 + + GSM76545 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76545/GSM76545.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76545-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Rectosigmoid - 21951 + + GSM76546 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76546/GSM76546.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76546-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 21955 + + GSM76547 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 3c +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Malignant granulosa cell tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76547/GSM76547.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76547-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 21957 + + GSM76548 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76548/GSM76548.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76548-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Thyroid - 21958 + + GSM76549 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Primary Site: Thyroid +Histology: Papillary carcinoma, tall cell variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76549/GSM76549.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76549-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Appendix - 22206 + + GSM76550 + RNA + 1 + + Appendix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Number of Years Until Relapse: None +Number of years in which a mammogram was obtained?: None +Number of years of use? (Oral contraceptives): None +Hormonal therapy (# of Years)?: None +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Appendix +Histology: Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76550/GSM76550.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76550-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 28971 + + GSM76551 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76551/GSM76551.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76551-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31570 + + GSM76552 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Mammogram calcifications?: Yes +Retreatment T: 2 +Retreatment N: 0(i-) +Retreatment Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76552/GSM76552.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76552-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 31573 + + GSM76553 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Hesitancy +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76553/GSM76553.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76553-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 31574 + + GSM76554 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76554/GSM76554.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76554-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 31575 + + GSM76555 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76555/GSM76555.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76555-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31577 + + GSM76556 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76556/GSM76556.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76556-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Parotid Gland - 31580 + + GSM76557 + RNA + 1 + + Parotid Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Difficulties in swallowing +Presenting Symptoms: Voice changes +Pathological Question: Histology +Pathological Value: Keratinizing Squamous Cell Carcinoma +Pathological Question: T +Pathological Value: 4b +Pathological Question: N +Pathological Value: 2b +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 4B +Pathological Question: Grade +Pathological Value: 2 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Theraphy +Pathological Value: No +Primary Site: Parotid Gland + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76557/GSM76557.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76557-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 31581 + + GSM76558 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical Grade: 4 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76558/GSM76558.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76558-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Renal Pelvis - 31585 + + GSM76559 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Primary Site: Renal Pelvis +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76559/GSM76559.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76559-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31586 + + GSM76560 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76560/GSM76560.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76560-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31588 + + GSM76561 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76561/GSM76561.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76561-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Stomach - 31589 + + GSM76562 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever had esophagitis/reflux?: Yes +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76562/GSM76562.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76562-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31593 + + GSM76563 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76563/GSM76563.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76563-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 31883 + + GSM76564 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76564/GSM76564.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76564-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Rectosigmoid - 33791 + + GSM76565 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Fallopian Tube +Histology: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76565/GSM76565.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76565-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 33792 + + GSM76566 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76566/GSM76566.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76566-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 33793 + + GSM76567 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76567/GSM76567.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76567-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 33794 + + GSM76568 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76568/GSM76568.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76568-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Pelvic mass - 33795 + + GSM76569 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76569/GSM76569.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76569-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 33798 + + GSM76570 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76570/GSM76570.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76570-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Rectum - 36310 + + GSM76571 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76571/GSM76571.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76571-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 36311 + + GSM76572 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: X +Retreatment N: X +Retreatment M: 1b +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Primary Site: Melanoma of Skin +Histology: Metastatic Spindle cell melanoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76572/GSM76572.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76572-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 36314 + + GSM76573 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76573/GSM76573.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76573-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 36318 + + GSM76574 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76574/GSM76574.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76574-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Rectum - 36320 + + GSM76575 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76575/GSM76575.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76575-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 36327 + + GSM76576 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76576/GSM76576.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76576-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 36328 + + GSM76577 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76577/GSM76577.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76577-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Corpus Uteri - 3759 + + GSM76578 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Corpus Uteri +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76578/GSM76578.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76578-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Renal Pelvis - 38211 + + GSM76579 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 56 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Renal Pelvis +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76579/GSM76579.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76579-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 38213 + + GSM76580 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 40 +Clinical T: 1b +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76580/GSM76580.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76580-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 4191 + + GSM76581 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal mass +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76581/GSM76581.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76581-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 4222 + + GSM76582 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0(i-) +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76582/GSM76582.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76582-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 4333 + + GSM76583 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76583/GSM76583.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76583-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Peritoneum - 4439 + + GSM76584 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Peritoneum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76584/GSM76584.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76584-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 4449 + + GSM76585 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 70 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76585/GSM76585.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76585-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 4450 + + GSM76586 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 36-40 +Pathological T: 1c +Pathological N: 0(i-) +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76586/GSM76586.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76586-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 4455 + + GSM76587 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76587/GSM76587.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76587-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Brain - 4457 + + GSM76588 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 100 +Presenting Symptoms: Seizures +Pathological Question: Histology +Pathological Value: Astrocytoma +Pathological Question: Grade +Pathological Value: WHO Grade III +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme +Primary Site: Brain + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76588/GSM76588.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76588-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 45125 + + GSM76590 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76590/GSM76590.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76590-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 45127 + + GSM76591 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Pathological T: 3b +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76591/GSM76591.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76591-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 4910 + + GSM76592 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 1c +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76592/GSM76592.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76592-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 4914 + + GSM76593 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 76 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76593/GSM76593.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76593-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 5131 + + GSM76594 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Large cell neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76594/GSM76594.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76594-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 5132 + + GSM76595 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Pathological T: 2 +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76595/GSM76595.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76595-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 5229 + + GSM76596 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76596/GSM76596.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76596-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Pelvic Mass - 5236 + + GSM76597 + RNA + 1 + + Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76597/GSM76597.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76597-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 53951 + + GSM76598 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76598/GSM76598.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76598-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 53954 + + GSM76599 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76599/GSM76599.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76599-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ureter - 53955 + + GSM76600 + RNA + 1 + + Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Ureter +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76600/GSM76600.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76600-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Ovary - 53957 + + GSM76601 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Primary Site: Ovary +Histology: Malignant mixed muellerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76601/GSM76601.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76601-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 53960 + + GSM76602 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76602/GSM76602.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76602-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 53962 + + GSM76603 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76603/GSM76603.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76603-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Ovary - 53963 + + GSM76604 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76604/GSM76604.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76604-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 54070 + + GSM76605 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76605/GSM76605.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76605-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 54071 + + GSM76606 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76606/GSM76606.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76606-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 54077 + + GSM76607 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76607/GSM76607.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76607-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 54078 + + GSM76608 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76608/GSM76608.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76608-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Cervix - 58990 + + GSM76609 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Primary Site: Cervix Uteri +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76609/GSM76609.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76609-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 58991 + + GSM76610 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76610/GSM76610.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76610-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 58992 + + GSM76611 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76611/GSM76611.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76611-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Thyroid - 58999 + + GSM76612 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 63 +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76612/GSM76612.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76612-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 59000 + + GSM76613 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76613/GSM76613.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76613-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Cervix - 59002 + + GSM76614 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76614/GSM76614.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76614-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 59003 + + GSM76615 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: D +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76615/GSM76615.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76615-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 6292 + + GSM76616 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76616/GSM76616.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76616-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 6293 + + GSM76617 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76617/GSM76617.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76617-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 6295 + + GSM76618 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76618/GSM76618.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76618-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 6300 + + GSM76619 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Pathological T: 2 +Pathological N: 2a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76619/GSM76619.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76619-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Bone & Cartilage - 6304 + + GSM76620 + RNA + 1 + + Bone & Cartilage + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological Question: Histology +Pathological Value: Chondrosarcoma +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: IIB +Pathological Question: Grade +Pathological Value: 4 +Pathological Question: Stage During or Following Multimodality Theraphy +Pathological Value: Yes +Pathological Question: Multiple Tumors +Pathological Value: No +Primary Site: Bone & Cartilage + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76620/GSM76620.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76620-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Lung - 6305 + + GSM76621 + RNA + 1 + + Left Lower Lobe Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Lung +Histology: Metastatic Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76621/GSM76621.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76621-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Brain - 6312 + + GSM76622 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Brain +Retreatment Stage: 4 +Retreatment Grade: 1 +Primary Site: Lung +Histology: Metastatic Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76622/GSM76622.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76622-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 6515 + + GSM76623 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76623/GSM76623.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76623-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Vagina - 6517 + + GSM76624 + RNA + 1 + + Vagina + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 75 +Clinical Question: Histology +Clinical Value: Adenocarcinoma, mixed epithelial type (papillary serous and clear cell) +Clinical Question: Grade +Clinical Value: 3 +Primary Site: Vagina + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76624/GSM76624.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76624-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Abdominal wall mass - 6519 + + GSM76625 + RNA + 1 + + Abdominal wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 4 +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Rectum +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76625/GSM76625.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76625-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Kidney - 6891 + + GSM76626 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 4 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76626/GSM76626.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76626-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 6894 + + GSM76627 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76627/GSM76627.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76627-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 6898 + + GSM76628 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76628/GSM76628.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76628-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 6910 + + GSM76629 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76629/GSM76629.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76629-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 6991 + + GSM76630 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 1 +Pathological N: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76630/GSM76630.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76630-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Head of Pancreas - 7000 + + GSM76631 + RNA + 1 + + Head of Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Theraphy: No +Primary Site: Head of Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76631/GSM76631.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76631-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 7005 + + GSM76632 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76632/GSM76632.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76632-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Ovary - 7008 + + GSM76633 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Carcinosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76633/GSM76633.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76633-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Corpus Uteri - 7230 + + GSM76634 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Histology +Clinical Value: High Grade Sarcoma with focal heterologous elements +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme +Primary Site: Myometrium + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76634/GSM76634.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76634-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 7231 + + GSM76635 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76635/GSM76635.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76635-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 7232 + + GSM76636 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76636/GSM76636.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76636-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Breast - 7233 + + GSM76637 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Other +Ethnic Background: Eastern Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Pathological T: 3 +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76637/GSM76637.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76637-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 78397 + + GSM76638 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76638/GSM76638.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76638-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Colon - 78403 + + GSM76639 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76639/GSM76639.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76639-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 8050 + + GSM76640 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Pathological T: 2c +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76640/GSM76640.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76640-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Retroperitoneum - 8051 + + GSM76641 + RNA + 1 + + Retroperitoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76641/GSM76641.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76641-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Soft Tissue Abdominal Wall - 8057 + + GSM76642 + RNA + 1 + + Soft Tissue Abdominal Wall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Primary Site: Soft Tissue Sarcoma +Histology: Myxoid liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76642/GSM76642.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76642-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2007-10-09 + + +Lymph node - 8058 + + GSM76643 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Metastatic Mixed adenocarcinoma and small cell neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76643/GSM76643.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76643-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Liver - 8059 + + GSM76644 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological Question: Histology +Pathological Value: Hepatocellular Carcinoma +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Metastatic Sites +Pathological Value: None +Pathological Question: Stage +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Theraphy +Pathological Value: No +Primary Site: Liver + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76644/GSM76644.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76644-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 8060 + + GSM76645 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4B +Retreatment Grade: 3 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76645/GSM76645.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76645-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Omentum - 8061 + + GSM76646 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76646/GSM76646.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76646-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Lung - 8067 + + GSM76647 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Workplace or household smokers?: No +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Kidney +Histology: Metastatic Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76647/GSM76647.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76647-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Prostate - 89224 + + GSM76648 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76648/GSM76648.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76648-tbl-1.txt + + + + + + + 2005-09-30 + 2005-09-30 + 2005-09-30 + + +Endometrium - 89227 + + GSM76649 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 90 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM76nnn/GSM76649/GSM76649.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM76649-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 1007 + + GSM88945 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88945/GSM88945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88945-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Liver - 1010 + + GSM88946 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: X +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88946/GSM88946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88946-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 101103 + + GSM88947 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 37 +Clinical T: 3a +Clinical N: 0 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88947/GSM88947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88947-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +L pelvic sidewall - 101104 + + GSM88948 + RNA + 1 + + L pelvic sidewall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88948/GSM88948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88948-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101106 + + GSM88949 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 39 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88949/GSM88949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88949-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101107 + + GSM88950 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88950/GSM88950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88950-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Retroperitoneal Mass - 101108 + + GSM88951 + RNA + 1 + + Retroperitoneal Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Grade: 1 +Primary Site: Soft Tissue Sarcoma +Histology: Liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88951/GSM88951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88951-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 101110 + + GSM88952 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1a +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88952/GSM88952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88952-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101111 + + GSM88953 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Asian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88953/GSM88953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88953-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Supraclavicular Lymph Node - 101112 + + GSM88954 + RNA + 1 + + Supraclavicular Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 1 +Retreatment M: X +Retreatment Grade: 3 +Primary Site: Pharynx +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88954/GSM88954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88954-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101113 + + GSM88955 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: SOB +Pathological T: 2 +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88955/GSM88955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88955-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 101120 + + GSM88956 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Vaginal bleeding +Pathological Grade: 3 +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88956/GSM88956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88956-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Omentum - 101122 + + GSM88957 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3c +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88957/GSM88957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88957-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Retroperitoneal Mass - 101125 + + GSM88958 + RNA + 1 + + Retroperitoneal Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Radiation +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Sarcoma +Histology: Spindle cell sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88958/GSM88958.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88958-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101138 + + GSM88959 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88959/GSM88959.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88959-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 101139 + + GSM88960 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 3a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88960/GSM88960.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88960-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Renal Pelvis - 101140 + + GSM88961 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88961/GSM88961.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88961-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 101142 + + GSM88962 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88962/GSM88962.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88962-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 101185 + + GSM88963 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88963/GSM88963.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88963-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 101187 + + GSM88964 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 0 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Mixed type renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88964/GSM88964.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88964-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 101190 + + GSM88965 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Histology +Retreatment Value: Papillary serous adenocarcinoma +Retreatment Question: T +Retreatment Value: X +Retreatment Question: N +Retreatment Value: X +Retreatment Question: M +Retreatment Value: 1 +Retreatment Question: Stage +Retreatment Value: IV +Retreatment Question: Grade +Retreatment Value: 3 +Primary Site: Peritoneum + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88965/GSM88965.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88965-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 101194 + + GSM88966 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Pathological T: 2a +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88966/GSM88966.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88966-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +L axillary lymph node - 1012 + + GSM88967 + RNA + 1 + + L axillary lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Cancer discovered by digital exam?: No +Pathological T: X +Pathological N: X +Pathological M: 1a +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Prostate +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88967/GSM88967.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88967-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 1021 + + GSM88968 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88968/GSM88968.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88968-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 1024 + + GSM88969 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 4d +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88969/GSM88969.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88969-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 104437 + + GSM88970 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88970/GSM88970.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88970-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 1047 + + GSM88971 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2B +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88971/GSM88971.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88971-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Parietal Pleura - 112863 + + GSM88972 + RNA + 1 + + Parietal Pleura + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pleura +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment ER: Positive +Retreatment PR: Positive +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88972/GSM88972.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88972-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 112866 + + GSM88973 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88973/GSM88973.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88973-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 112867 + + GSM88974 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3a +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88974/GSM88974.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88974-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Uterus - 112869 + + GSM88975 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Primary Site: Endometrium +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88975/GSM88975.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88975-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 1291 + + GSM88976 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88976/GSM88976.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88976-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Prostate - 1295 + + GSM88977 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Hesitancy +Presenting Symptoms: Nocturia +Presenting Symptoms: Urgency +PSA: Normal +Cancer discovered by digital exam?: Yes +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88977/GSM88977.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88977-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 1301 + + GSM88978 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 23 +Pathological T: 1c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: X +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88978/GSM88978.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88978-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 1305 + + GSM88979 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 29 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 26-30 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88979/GSM88979.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88979-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 20271 + + GSM88980 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 4a +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88980/GSM88980.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88980-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 20272 + + GSM88981 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 79 +Presenting Symptoms: Hemoptysis +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88981/GSM88981.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88981-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 20279 + + GSM88982 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Other +Ethnic Background: Asian Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88982/GSM88982.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88982-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2007-10-09 + + +Lung - 20283 + + GSM88983 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Lung +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88983/GSM88983.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88983-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 20285 + + GSM88984 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 47 +Presenting Symptoms: Vaginal bleeding +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88984/GSM88984.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88984-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 20298 + + GSM88985 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88985/GSM88985.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88985-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 20314 + + GSM88986 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1b +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88986/GSM88986.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88986-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 20450 + + GSM88987 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88987/GSM88987.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88987-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 20458 + + GSM88988 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 2a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88988/GSM88988.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88988-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 20461 + + GSM88989 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 86 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88989/GSM88989.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88989-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 21631 + + GSM88990 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 31-35 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88990/GSM88990.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88990-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 21636 + + GSM88991 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88991/GSM88991.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88991-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 21981 + + GSM88992 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Abdominal pain +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88992/GSM88992.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88992-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Bladder - 2315 + + GSM88993 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Relapse Since Primary Treatment: No +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88993/GSM88993.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88993-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 2318 + + GSM88994 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88994/GSM88994.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88994-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 2325 + + GSM88995 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88995/GSM88995.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88995-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 2327 + + GSM88996 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Mammogram: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88996/GSM88996.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88996-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 31579 + + GSM88997 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88997/GSM88997.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88997-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Thyroid - 31583 + + GSM88998 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Multiple Tumours: Yes +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88998/GSM88998.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88998-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 31587 + + GSM88999 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM88nnn/GSM88999/GSM88999.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM88999-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 31592 + + GSM89000 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89000/GSM89000.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89000-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 33797 + + GSM89001 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Screening studies performed?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89001/GSM89001.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89001-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 34380 + + GSM89002 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89002/GSM89002.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89002-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36312 + + GSM89003 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89003/GSM89003.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89003-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 36315 + + GSM89004 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89004/GSM89004.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89004-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36321 + + GSM89005 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89005/GSM89005.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89005-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36323 + + GSM89006 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89006/GSM89006.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89006-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 36324 + + GSM89007 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89007/GSM89007.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89007-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36325 + + GSM89008 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 29 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Metaplastic squamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89008/GSM89008.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89008-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 36329 + + GSM89009 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Invasive ductal carcinoma, mucinous type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89009/GSM89009.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89009-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 38218 + + GSM89010 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89010/GSM89010.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89010-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4193 + + GSM89011 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89011/GSM89011.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89011-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 4200 + + GSM89012 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89012/GSM89012.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89012-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 4210 + + GSM89013 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89013/GSM89013.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89013-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4211 + + GSM89014 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89014/GSM89014.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89014-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4212 + + GSM89015 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89015/GSM89015.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89015-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4225 + + GSM89016 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89016/GSM89016.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89016-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Prostate - 4330 + + GSM89017 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +PSA: Elevated +# of years PSA Tested?: 0-5 +Pathological T: 3b +Pathological N: 0 +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89017/GSM89017.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89017-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4331 + + GSM89018 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89018/GSM89018.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89018-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4334 + + GSM89019 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89019/GSM89019.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89019-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 4338 + + GSM89020 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89020/GSM89020.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89020-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 4340 + + GSM89021 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89021/GSM89021.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89021-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 45121 + + GSM89022 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89022/GSM89022.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89022-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 45122 + + GSM89023 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 240 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89023/GSM89023.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89023-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 45123 + + GSM89024 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89024/GSM89024.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89024-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 45126 + + GSM89025 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89025/GSM89025.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89025-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 45129 + + GSM89026 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89026/GSM89026.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89026-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Iliac bone & soft tissue - 53953 + + GSM89027 + RNA + 1 + + Iliac bone & soft tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological Question: Histology +Pathological Value: Dedifferentiated chondrosarcoma +Primary Site: Iliac bone & soft tissue + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89027/GSM89027.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89027-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Omentum or Pelvic Mass - 53958 + + GSM89028 + RNA + 1 + + Omentum or Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89028/GSM89028.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89028-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 53961 + + GSM89029 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89029/GSM89029.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89029-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Liver - 54073 + + GSM89030 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89030/GSM89030.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89030-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Stomach - 54074 + + GSM89031 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Histology +Clinical Value: Gastrointestinal stromal tumor +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme +Primary Site: Stomach + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89031/GSM89031.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89031-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Thyroid - 54075 + + GSM89032 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 4b +Pathological N: 1a +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4C +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89032/GSM89032.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89032-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +R chest wall mass - 54076 + + GSM89033 + RNA + 1 + + R chest wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Multiple Tumours: No +Primary Site: Soft Tissue Sarcoma of R axilla +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89033/GSM89033.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89033-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 55695 + + GSM89034 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1b +Pathological N: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89034/GSM89034.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89034-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Abdominal-pelvic mass - 58993 + + GSM89035 + RNA + 1 + + Abdominal-pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Histology +Clinical Value: Carcinoma, NOS +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Unknown + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89035/GSM89035.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89035-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 58994 + + GSM89036 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89036/GSM89036.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89036-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 58996 + + GSM89037 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89037/GSM89037.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89037-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Thyroid - 58997 + + GSM89038 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89038/GSM89038.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89038-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Small intestine - 58998 + + GSM89039 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 4 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 4A +Retreatment Grade: 3 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89039/GSM89039.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89039-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 59005 + + GSM89040 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Diagnosis made by: Colonoscopy +Clinical T: 3 +Clinical N: 2 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89040/GSM89040.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89040-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Parotid Gland - 59006 + + GSM89041 + RNA + 1 + + Parotid Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Skin of Lt Temple +Histology: Metastatic Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89041/GSM89041.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89041-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endocervix - 59007 + + GSM89042 + RNA + 1 + + Endocervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 70 +Pathological T: 1b1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89042/GSM89042.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89042-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Thyroid - 59008 + + GSM89043 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2 +Pathological N: 0 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, oncocytic variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89043/GSM89043.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89043-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 59009 + + GSM89044 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89044/GSM89044.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89044-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Pancreas - 6210 + + GSM89045 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89045/GSM89045.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89045-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 6308 + + GSM89046 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89046/GSM89046.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89046-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 6897 + + GSM89047 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89047/GSM89047.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89047-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Urinary Bladder - 6992 + + GSM89048 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 48 +Clinical T: 2a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89048/GSM89048.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89048-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 6994 + + GSM89049 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89049/GSM89049.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89049-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Cervix - 6996 + + GSM89050 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1b1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89050/GSM89050.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89050-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Pelvic Mass - 6998 + + GSM89051 + RNA + 1 + + Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3B +Retreatment Grade: 2 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89051/GSM89051.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89051-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 6999 + + GSM89052 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89052/GSM89052.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89052-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 7003 + + GSM89053 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89053/GSM89053.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89053-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Liver - 7006 + + GSM89054 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89054/GSM89054.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89054-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 77736 + + GSM89055 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 240 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89055/GSM89055.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89055-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Dermal and subcutaneous fat and lymph nodes from neck dissection - 78390 + + GSM89056 + RNA + 1 + + Dermal and subcutaneous fat and lymph nodes from neck dissection + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 2b +Retreatment M: X +Retreatment Grade: 3 +Primary Site: Salivary Gland +Histology: Carcinoma ex-pleomorphic adenoma (malignant mixed tumor) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89056/GSM89056.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89056-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 78391 + + GSM89057 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Signet ring cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89057/GSM89057.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89057-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78392 + + GSM89058 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89058/GSM89058.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89058-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Testis - 78394 + + GSM89059 + RNA + 1 + + Testis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 98 +Presenting Symptoms: Lymphadenopathy +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Pathological Question: Histology +Pathological Value: Malignant Lymphoma,, Diffuse Large B-Cell Type +Pathological Question: Stage +Pathological Value: I E +Pathological Question: Symptoms +Pathological Value: A +Primary Site: Testis + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89059/GSM89059.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89059-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 78395 + + GSM89060 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89060/GSM89060.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89060-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 78398 + + GSM89061 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89061/GSM89061.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89061-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 78400 + + GSM89062 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89062/GSM89062.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89062-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78404 + + GSM89063 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89063/GSM89063.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89063-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78405 + + GSM89064 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89064/GSM89064.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89064-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78406 + + GSM89065 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Adenocarcinoma, clear cell type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89065/GSM89065.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89065-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 78409 + + GSM89066 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89066/GSM89066.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89066-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 8043 + + GSM89067 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3b +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89067/GSM89067.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89067-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 8044 + + GSM89068 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89068/GSM89068.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89068-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 8046 + + GSM89069 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89069/GSM89069.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89069-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 8047 + + GSM89070 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89070/GSM89070.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89070-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 8049 + + GSM89071 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89071/GSM89071.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89071-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 8068 + + GSM89072 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Papillary adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89072/GSM89072.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89072-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Urinary Bladder - 84152 + + GSM89073 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2a +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2 +Retreatment Grade: 4 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89073/GSM89073.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89073-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 84157 + + GSM89074 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 29 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89074/GSM89074.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89074-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectosigmoid Colon - 84168 + + GSM89075 + RNA + 1 + + Rectosigmoid Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89075/GSM89075.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89075-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 84175 + + GSM89076 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89076/GSM89076.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89076-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 84183 + + GSM89077 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1000 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Retreatment T: 4b +Retreatment N: 1a +Retreatment M: 0 +Retreatment Stage: 3B +Retreatment Grade: 3 +Retreatment Multiple Tumors: No +Retreatment ER: Positive +Retreatment PR: Negative +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Metaplastic Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89077/GSM89077.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89077-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 84190 + + GSM89078 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 50 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89078/GSM89078.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89078-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89114 + + GSM89079 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89079/GSM89079.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89079-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Exocrine Pancreas - 89115 + + GSM89080 + RNA + 1 + + Exocrine Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89080/GSM89080.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89080-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89116 + + GSM89081 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Bloating +Clinical T: 3b +Clinical N: 0 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89081/GSM89081.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89081-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89117 + + GSM89082 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89082/GSM89082.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89082-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Vaginal mass - 89119 + + GSM89083 + RNA + 1 + + Vaginal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Histology +Retreatment Value: Muellerian adenosarcoma with rhabdomyosarcomatous overgrowth +Retreatment Question: Stage +Retreatment Value: No AJCC staging scheme for this site and histology +Primary Site: Corpus Uteri + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89083/GSM89083.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89083-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Soft Tissue Rt Knee - 89152 + + GSM89084 + RNA + 1 + + Soft Tissue Rt Knee + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Prior Therapy: Radiation +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Rt Knee +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89084/GSM89084.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89084-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Corpus Uteri - 89153 + + GSM89085 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89085/GSM89085.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89085-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 89154 + + GSM89086 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89086/GSM89086.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89086-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 89155 + + GSM89087 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89087/GSM89087.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89087-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Soft Tissue Lt Thigh - 89170 + + GSM89088 + RNA + 1 + + Soft Tissue Lt Thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Radiation +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Lt Thigh +Histology: Myxoid pleomorphic spindle cell sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89088/GSM89088.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89088-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Endometrium - 89171 + + GSM89089 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89089/GSM89089.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89089-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 89184 + + GSM89090 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89090/GSM89090.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89090-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89185 + + GSM89091 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bloating +Primary Site: Ovary +Histology: Undifferentiated carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89091/GSM89091.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89091-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Vulvar lesion - 89186 + + GSM89092 + RNA + 1 + + Vulvar lesion + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 4 +Pathological N: 0 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89092/GSM89092.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89092-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary - 89191 + + GSM89093 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89093/GSM89093.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89093-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 89225 + + GSM89094 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 98 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89094/GSM89094.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89094-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 89228 + + GSM89095 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 44 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89095/GSM89095.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89095-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectum - 89229 + + GSM89096 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89096/GSM89096.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89096-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Ovary or Omentum - 89230 + + GSM89097 + RNA + 1 + + Ovary or Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 69 +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89097/GSM89097.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89097-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 89232 + + GSM89098 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89098/GSM89098.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89098-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 89233 + + GSM89099 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1b +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89099/GSM89099.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89099-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Rectosigmoid - 89234 + + GSM89100 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological Grade: 2 +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89100/GSM89100.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89100-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Lung - 89240 + + GSM89101 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Histology +Retreatment Value: Ewing's Sarcoma +Retreatment Question: T +Retreatment Value: X +Retreatment Question: N +Retreatment Value: 1 +Retreatment Question: M +Retreatment Value: 1b +Retreatment Question: Metastatic Sites +Retreatment Value: Lung +Retreatment Question: Stage +Retreatment Value: IVB +Retreatment Question: Grade +Retreatment Value: 4 +Primary Site: Bone + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89101/GSM89101.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89101-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Breast - 89263 + + GSM89102 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Pathological T: 4d +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89102/GSM89102.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89102-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Colon - 95093 + + GSM89103 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89103/GSM89103.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89103-tbl-1.txt + + + + + + + 2005-12-22 + 2005-12-22 + 2005-12-22 + + +Kidney - 95096 + + GSM89104 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Adenocarcinoma, clear cell type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM89nnn/GSM89104/GSM89104.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM89104-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Thyroid - 101092 + + GSM102424 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3 +Pathological N: 0 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102424/GSM102424.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102424-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Endometrium - 101093 + + GSM102425 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102425/GSM102425.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102425-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 101094 + + GSM102426 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma, secretory variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102426/GSM102426.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102426-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Soft Tissue L Thigh - 101095 + + GSM102427 + RNA + 1 + + Soft Tissue L Thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Primary Site: Soft Tissue Sarcoma +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102427/GSM102427.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102427-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101096 + + GSM102428 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102428/GSM102428.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102428-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 101097 + + GSM102429 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102429/GSM102429.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102429-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Uterus - 101099 + + GSM102430 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102430/GSM102430.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102430-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 101116 + + GSM102431 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102431/GSM102431.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102431-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101119 + + GSM102432 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102432/GSM102432.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102432-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101126 + + GSM102433 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 80 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102433/GSM102433.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102433-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Bladder - 101127 + + GSM102434 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 53 +Pathological T: 2a +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102434/GSM102434.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102434-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Prostate - 101128 + + GSM102435 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102435/GSM102435.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102435-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 101129 + + GSM102436 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102436/GSM102436.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102436-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Bladder - 101130 + + GSM102437 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102437/GSM102437.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102437-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101133 + + GSM102438 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102438/GSM102438.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102438-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 101135 + + GSM102439 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 110 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Metaplastic squamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102439/GSM102439.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102439-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 101141 + + GSM102440 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102440/GSM102440.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102440-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 101145 + + GSM102441 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102441/GSM102441.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102441-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Transverse colon nodule - 101146 + + GSM102442 + RNA + 1 + + Transverse colon nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102442/GSM102442.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102442-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101147 + + GSM102443 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 3a +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102443/GSM102443.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102443-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Endometrium - 101148 + + GSM102444 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102444/GSM102444.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102444-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 101150 + + GSM102445 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102445/GSM102445.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102445-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 101151 + + GSM102446 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102446/GSM102446.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102446-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101178 + + GSM102447 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102447/GSM102447.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102447-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Renal Pelvis - 101179 + + GSM102448 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 210 +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis and Ureter +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102448/GSM102448.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102448-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101182 + + GSM102449 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102449/GSM102449.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102449-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101183 + + GSM102450 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102450/GSM102450.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102450-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101184 + + GSM102451 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102451/GSM102451.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102451-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Thyroid - 101186 + + GSM102452 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102452/GSM102452.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102452-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectum - 101188 + + GSM102453 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102453/GSM102453.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102453-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Uterus - 101191 + + GSM102454 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 300 +Pathological T: 1c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Corpus Uteri +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102454/GSM102454.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102454-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 101192 + + GSM102455 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102455/GSM102455.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102455-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 101193 + + GSM102456 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102456/GSM102456.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102456-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Axillary lymph node - 104341 + + GSM102457 + RNA + 1 + + Axillary lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Retreatment T: 1c +Retreatment N: 2a +Retreatment M: 0 +Retreatment Stage: 3A +Retreatment Grade: X +Retreatment ER: Positive +Retreatment PR: Negative +Retreatment HER/2 Neu: Positive +Primary Site: Breast +Histology: Metastatic Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102457/GSM102457.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102457-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104344 + + GSM102458 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102458/GSM102458.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102458-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104345 + + GSM102459 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102459/GSM102459.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102459-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 104346 + + GSM102460 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102460/GSM102460.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102460-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104347 + + GSM102461 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102461/GSM102461.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102461-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 104350 + + GSM102462 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102462/GSM102462.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102462-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104352 + + GSM102463 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Family History of Cancer?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102463/GSM102463.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102463-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104354 + + GSM102464 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102464/GSM102464.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102464-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 104355 + + GSM102465 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102465/GSM102465.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102465-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Cervical Lymph Node - 104366 + + GSM102466 + RNA + 1 + + Cervical Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Fever +Presenting Symptoms: Night sweats +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Pathological Stage: 4 +Pathological Symptoms: B +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102466/GSM102466.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102466-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast dermal mass - 104367 + + GSM102467 + RNA + 1 + + Breast dermal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Fever +Presenting Symptoms: Night sweats +Presenting Symptoms: Weight loss +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 4 +Clinical Symptoms: B +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Anaplastic large cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102467/GSM102467.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102467-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 104438 + + GSM102468 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102468/GSM102468.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102468-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Endometrium - 111073 + + GSM102469 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102469/GSM102469.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102469-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Urinary Bladder - 111075 + + GSM102470 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102470/GSM102470.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102470-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 112884 + + GSM102471 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102471/GSM102471.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102471-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 118653 + + GSM102472 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102472/GSM102472.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102472-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Peritoneum - 118655 + + GSM102473 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bloating +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102473/GSM102473.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102473-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Small Intestine - 118658 + + GSM102474 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Small Intestine +Histology: Adenocarcinoma Arising in Tubular Adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102474/GSM102474.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102474-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Urinary Bladder - 118659 + + GSM102475 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102475/GSM102475.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102475-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Cervix - 118660 + + GSM102476 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Pathological T: 1b1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102476/GSM102476.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102476-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 118661 + + GSM102477 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102477/GSM102477.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102477-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 118662 + + GSM102478 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma, endometrioid and papillary serous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102478/GSM102478.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102478-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 118663 + + GSM102479 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102479/GSM102479.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102479-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Abdominal Wall - 118664 + + GSM102480 + RNA + 1 + + Abdominal Wall + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102480/GSM102480.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102480-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Cervix - 118666 + + GSM102481 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102481/GSM102481.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102481-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 118668 + + GSM102482 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0(i+) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102482/GSM102482.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102482-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 118671 + + GSM102483 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site/histology +Primary Site: Ovary +Clinical Question: Histology +Clinical Value: Adult Granulosa Cell Tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102483/GSM102483.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102483-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Small Intestine - 118672 + + GSM102484 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102484/GSM102484.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102484-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 118673 + + GSM102485 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102485/GSM102485.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102485-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectum - 127821 + + GSM102486 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102486/GSM102486.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102486-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 127822 + + GSM102487 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102487/GSM102487.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102487-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Uterus - 129650 + + GSM102488 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102488/GSM102488.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102488-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 129651 + + GSM102489 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102489/GSM102489.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102489-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 129652 + + GSM102490 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Pathological Question: Multiple Tumors +Pathological Value: No +Primary Site: Kidney +Pathological Question: Histology +Pathological Value: Oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102490/GSM102490.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102490-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 129653 + + GSM102491 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102491/GSM102491.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102491-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Endometrium - 129656 + + GSM102492 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102492/GSM102492.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102492-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 129658 + + GSM102493 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3a +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Kidney +Histology: Metastatic Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102493/GSM102493.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102493-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Abdominal wall mass - 129659 + + GSM102494 + RNA + 1 + + Abdominal wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3B +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102494/GSM102494.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102494-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Stomach - 129661 + + GSM102495 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Have you ever had esophagitis/reflux?: Yes +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Adenocarcinoma Diffuse Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102495/GSM102495.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102495-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Soft Tissue of Leg - 129662 + + GSM102496 + RNA + 1 + + Soft Tissue of Leg + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2b +Retreatment N: X +Retreatment Grade: 4 +Primary Site: Soft Tissue Sarcoma +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102496/GSM102496.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102496-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 129690 + + GSM102497 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102497/GSM102497.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102497-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Prostate - 129691 + + GSM102498 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Hesitancy +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102498/GSM102498.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102498-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 129692 + + GSM102499 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102499/GSM102499.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102499-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 129694 + + GSM102500 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102500/GSM102500.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102500-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 129700 + + GSM102501 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102501/GSM102501.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102501-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 129702 + + GSM102502 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Retreatment T: 2 +Retreatment N: 2a +Retreatment M: 0 +Retreatment Stage: 3A +Retreatment Grade: 3 +Retreatment ER: Positive +Retreatment PR: Negative +Retreatment HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102502/GSM102502.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102502-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Liver - 129708 + + GSM102503 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Clinical Question: T +Clinical Value: 4 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3B +Clinical Question: Grade +Clinical Value: 4 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102503/GSM102503.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102503-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 129709 + + GSM102504 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102504/GSM102504.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102504-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 132229 + + GSM102505 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102505/GSM102505.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102505-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 133638 + + GSM102506 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102506/GSM102506.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102506-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 136910 + + GSM102507 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Persistent Cough +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102507/GSM102507.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102507-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rib - 136912 + + GSM102508 + RNA + 1 + + Rib + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Unknown Primary +Pathological Question: Histology +Pathological Value: Metastatic Large cell carcinoma with clear cell features + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102508/GSM102508.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102508-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Uterus - 136913 + + GSM102509 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102509/GSM102509.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102509-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Prostate - 136915 + + GSM102510 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102510/GSM102510.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102510-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Small intestine - 136917 + + GSM102511 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 36-40 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Primary Site: Skin of face +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102511/GSM102511.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102511-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 136919 + + GSM102512 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Adrenals +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102512/GSM102512.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102512-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 138195 + + GSM102513 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102513/GSM102513.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102513-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lymph node R neck - 138196 + + GSM102514 + RNA + 1 + + Lymph node R neck + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3a +Retreatment N: 2b +Retreatment M: 0 +Retreatment Stage: 3B +Primary Site: Skin of face +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102514/GSM102514.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102514-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney and Ureter - 138197 + + GSM102515 + RNA + 1 + + Kidney and Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumours: Yes +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis and Ureter +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102515/GSM102515.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102515-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 138198 + + GSM102516 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102516/GSM102516.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102516-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 138200 + + GSM102517 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma in a Villous Adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102517/GSM102517.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102517-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 138410 + + GSM102518 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102518/GSM102518.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102518-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 138411 + + GSM102519 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102519/GSM102519.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102519-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 138414 + + GSM102520 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102520/GSM102520.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102520-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 144545 + + GSM102521 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102521/GSM102521.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102521-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 149050 + + GSM102522 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102522/GSM102522.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102522-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 149054 + + GSM102523 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 3 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102523/GSM102523.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102523-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 149055 + + GSM102524 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102524/GSM102524.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102524-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 149057 + + GSM102525 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102525/GSM102525.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102525-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 151146 + + GSM102526 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Pathological T: 1b +Pathological N: 0(i-) +Pathological Grade: 1 +Primary Site: Breast +Histology: Adenoid Cystic Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102526/GSM102526.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102526-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Cervix - 151624 + + GSM102527 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102527/GSM102527.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102527-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Omentum - 151628 + + GSM102528 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 270 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102528/GSM102528.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102528-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 152473 + + GSM102529 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102529/GSM102529.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102529-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 152477 + + GSM102530 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102530/GSM102530.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102530-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Liver - 152480 + + GSM102531 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Digital rectal exam +Retreatment T: 3 +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102531/GSM102531.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102531-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Soft Tissue Thigh - 157425 + + GSM102532 + RNA + 1 + + Soft Tissue Thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Sarcoma +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102532/GSM102532.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102532-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 161432 + + GSM102533 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102533/GSM102533.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102533-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 161433 + + GSM102534 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2B +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102534/GSM102534.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102534-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 161438 + + GSM102535 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102535/GSM102535.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102535-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 161439 + + GSM102536 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102536/GSM102536.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102536-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 161463 + + GSM102537 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102537/GSM102537.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102537-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 161465 + + GSM102538 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Clinical T: 3c +Clinical N: X +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Malignant mixed muellerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102538/GSM102538.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102538-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Rectosigmoid - 161466 + + GSM102539 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102539/GSM102539.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102539-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 161480 + + GSM102540 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102540/GSM102540.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102540-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Esophagus - 180954 + + GSM102541 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3 +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102541/GSM102541.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102541-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 180956 + + GSM102542 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102542/GSM102542.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102542-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Esophagus - 180958 + + GSM102543 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3 +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102543/GSM102543.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102543-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 180960 + + GSM102544 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102544/GSM102544.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102544-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 182732 + + GSM102545 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102545/GSM102545.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102545-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 20329 + + GSM102546 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102546/GSM102546.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102546-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Transverse colon nodule - 20457 + + GSM102547 + RNA + 1 + + Transverse colon nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102547/GSM102547.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102547-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 21976 + + GSM102548 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 2 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102548/GSM102548.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102548-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 2320 + + GSM102549 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102549/GSM102549.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102549-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 23942 + + GSM102550 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102550/GSM102550.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102550-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 36322 + + GSM102551 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102551/GSM102551.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102551-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 4445 + + GSM102552 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102552/GSM102552.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102552-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 4453 + + GSM102553 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102553/GSM102553.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102553-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 45120 + + GSM102554 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102554/GSM102554.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102554-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 54079 + + GSM102555 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: Yes +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102555/GSM102555.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102555-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Lung - 6310 + + GSM102556 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Retreatment T: 1 +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Lung +Histology: Metastatic Squamous Cell Carcinoma, Non-Keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102556/GSM102556.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102556-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Ovary - 6314 + + GSM102557 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102557/GSM102557.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102557-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Tongue - 77734 + + GSM102558 + RNA + 1 + + Tongue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2 +Pathological Question: Grade +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Tongue +Pathological Question: Histology +Pathological Value: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102558/GSM102558.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102558-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 78396 + + GSM102559 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102559/GSM102559.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102559-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Thyroid - 78399 + + GSM102560 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 31 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102560/GSM102560.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102560-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 78401 + + GSM102561 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102561/GSM102561.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102561-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 78402 + + GSM102562 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102562/GSM102562.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102562-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 78407 + + GSM102563 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102563/GSM102563.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102563-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 8032 + + GSM102564 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102564/GSM102564.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102564-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 8066 + + GSM102565 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102565/GSM102565.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102565-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84136 + + GSM102566 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102566/GSM102566.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102566-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84138 + + GSM102567 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102567/GSM102567.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102567-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84140 + + GSM102568 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102568/GSM102568.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102568-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84141 + + GSM102569 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102569/GSM102569.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102569-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 84142 + + GSM102570 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1b +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Brain +Clinical Stage: 4 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102570/GSM102570.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102570-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84144 + + GSM102571 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Colloid Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102571/GSM102571.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102571-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84147 + + GSM102572 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102572/GSM102572.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102572-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84148 + + GSM102573 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102573/GSM102573.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102573-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84150 + + GSM102574 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 66 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102574/GSM102574.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102574-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 84153 + + GSM102575 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102575/GSM102575.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102575-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84154 + + GSM102576 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Pathological Question: ER +Pathological Value: Negative +Pathological Question: PR +Pathological Value: Negative +Pathological Question: HER/2 Neu +Pathological Value: Not performed +Primary Site: Breast +Pathological Question: Histology +Pathological Value: Pleomorphic liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102576/GSM102576.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102576-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84158 + + GSM102577 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102577/GSM102577.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102577-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 84159 + + GSM102578 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102578/GSM102578.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102578-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84162 + + GSM102579 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102579/GSM102579.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102579-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 84174 + + GSM102580 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Retreatment T: 3 +Retreatment N: 2a +Retreatment M: 0 +Retreatment Stage: 3A +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102580/GSM102580.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102580-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Colon - 84191 + + GSM102581 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102581/GSM102581.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102581-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Kidney - 89226 + + GSM102582 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Tubulo-papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102582/GSM102582.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102582-tbl-1.txt + + + + + + + 2006-03-30 + 2006-03-30 + 2006-03-30 + + +Breast - 89267 + + GSM102583 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM102nnn/GSM102583/GSM102583.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM102583-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Cervix Uteri - 101086 + + GSM117576 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 3b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117576/GSM117576.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117576-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectum - 104340 + + GSM117577 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma in adenomatous polyp + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117577/GSM117577.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117577-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 104351 + + GSM117578 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117578/GSM117578.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117578-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 112870 + + GSM117579 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117579/GSM117579.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117579-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 112875 + + GSM117580 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117580/GSM117580.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117580-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 112876 + + GSM117581 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117581/GSM117581.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117581-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 129673 + + GSM117582 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2a +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117582/GSM117582.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117582-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Fallopian tube - 129674 + + GSM117583 + RNA + 1 + + Fallopian tube + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117583/GSM117583.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117583-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 129693 + + GSM117584 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117584/GSM117584.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117584-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 129701 + + GSM117585 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 3 +Pathological N: 2a +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117585/GSM117585.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117585-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 133632 + + GSM117586 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117586/GSM117586.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117586-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Brain - 133635 + + GSM117587 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Headaches +Presenting Symptoms: Memory Problems +Clinical Question: Grade +Clinical Value: WHO Grade IV +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Brain +Clinical Question: Histology +Clinical Value: Glioblastoma multiformae + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117587/GSM117587.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117587-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 133647 + + GSM117588 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117588/GSM117588.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117588-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 133648 + + GSM117589 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 49 +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117589/GSM117589.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117589-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 133649 + + GSM117590 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Pathological T: 1c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117590/GSM117590.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117590-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Soft Tissue of Retroperitoneum - 133650 + + GSM117591 + RNA + 1 + + Soft Tissue of Retroperitoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this Site/Histology +Primary Site: Soft Tissue of Retroperitoneum +Clinical Question: Histology +Clinical Value: Cellular Schwannoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117591/GSM117591.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117591-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 133672 + + GSM117592 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: X +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117592/GSM117592.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117592-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 133677 + + GSM117600 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117600/GSM117600.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117600-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 133683 + + GSM117610 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117610/GSM117610.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117610-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Cervix - 135187 + + GSM117626 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117626/GSM117626.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117626-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 138193 + + GSM117629 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 40 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117629/GSM117629.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117629-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 138204 + + GSM117632 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117632/GSM117632.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117632-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 143650 + + GSM117635 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117635/GSM117635.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117635-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 143654 + + GSM117639 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 41-45 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117639/GSM117639.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117639-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 143655 + + GSM117642 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117642/GSM117642.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117642-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 143657 + + GSM117643 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117643/GSM117643.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117643-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 143658 + + GSM117644 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117644/GSM117644.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117644-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Pancreas - 143659 + + GSM117645 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117645/GSM117645.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117645-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Thyroid - 143660 + + GSM117646 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 20-30 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Primary Site: Thyroid +Histology: Follicular adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117646/GSM117646.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117646-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Pancreas - 143661 + + GSM117647 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117647/GSM117647.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117647-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 143662 + + GSM117648 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Fallopian Tube +Histology: Metastatic Papillary serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117648/GSM117648.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117648-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 143664 + + GSM117649 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117649/GSM117649.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117649-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 143666 + + GSM117650 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117650/GSM117650.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117650-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Soft Tissue Left Buttock - 143668 + + GSM117651 + RNA + 1 + + Soft Tissue Left Buttock + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Soft Tissue Sarcoma +Histology: Myxoid liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117651/GSM117651.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117651-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectosigmoid - 144558 + + GSM117652 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117652/GSM117652.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117652-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 144572 + + GSM117653 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117653/GSM117653.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117653-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 144574 + + GSM117655 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis +Histology: Urothelial sarcomatoid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117655/GSM117655.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117655-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 144575 + + GSM117656 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 50 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117656/GSM117656.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117656-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Liver - 144576 + + GSM117657 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Grade +Clinical Value: 4 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage +Clinical Value: Insufficient information for staging - Biopsy only +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117657/GSM117657.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117657-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 144577 + + GSM117658 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117658/GSM117658.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117658-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 149051 + + GSM117659 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 36-40 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117659/GSM117659.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117659-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 149056 + + GSM117660 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117660/GSM117660.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117660-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 151602 + + GSM117661 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 145 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117661/GSM117661.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117661-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 151604 + + GSM117662 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117662/GSM117662.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117662-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 151605 + + GSM117663 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117663/GSM117663.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117663-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 151606 + + GSM117664 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117664/GSM117664.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117664-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Soft Tissue Left Buttock - 151611 + + GSM117665 + RNA + 1 + + Soft Tissue Left Buttock + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 2b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Sacral nerve sheath +Histology: Malignant peripheral nerve sheath tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117665/GSM117665.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117665-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Myometrium - 151612 + + GSM117666 + RNA + 1 + + Myometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this site/histology +Clinical Question: Grade +Clinical Value: 2 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117666/GSM117666.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117666-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 151613 + + GSM117667 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117667/GSM117667.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117667-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 151614 + + GSM117668 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this Site/Histology +Primary Site: Gastrointestinal Tract, NOS +Clinical Question: Histology +Clinical Value: Metastatic Signet ring cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117668/GSM117668.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117668-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Vulva - 151619 + + GSM117669 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117669/GSM117669.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117669-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 151622 + + GSM117670 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Ovary +Pathological Question: Histology +Pathological Value: Borderline tumor of ovary, mixed epithelial type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117670/GSM117670.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117670-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 151623 + + GSM117671 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117671/GSM117671.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117671-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 151627 + + GSM117672 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 40 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117672/GSM117672.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117672-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 152474 + + GSM117673 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117673/GSM117673.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117673-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 152479 + + GSM117674 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117674/GSM117674.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117674-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 152481 + + GSM117675 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117675/GSM117675.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117675-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 152482 + + GSM117676 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117676/GSM117676.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117676-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2007-10-09 + + +Urinary Bladder - 152484 + + GSM117677 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 4 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117677/GSM117677.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117677-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 152485 + + GSM117678 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 16-20 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 2 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 1 +Retreatment Grade: 1 +Retreatment Multiple Tumors: No +Retreatment Stage During or Following Multimodality Therapy: No +Retreatment Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117678/GSM117678.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117678-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 152486 + + GSM117679 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117679/GSM117679.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117679-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 152487 + + GSM117680 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117680/GSM117680.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117680-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 152488 + + GSM117681 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117681/GSM117681.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117681-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 152489 + + GSM117682 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117682/GSM117682.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117682-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectum - 152490 + + GSM117683 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Carcinoma in situ arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117683/GSM117683.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117683-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectosigmoid - 152491 + + GSM117684 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117684/GSM117684.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117684-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161430 + + GSM117685 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117685/GSM117685.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117685-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161435 + + GSM117686 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117686/GSM117686.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117686-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161462 + + GSM117687 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 55 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117687/GSM117687.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117687-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Axillary Lymph Node - 161469 + + GSM117688 + RNA + 1 + + Axillary Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Retreatment T: 1b +Retreatment N: 1a +Retreatment M: 0 +Retreatment Stage: 2A +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Positive +Primary Site: Breast +Histology: Metastatic Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117688/GSM117688.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117688-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 161511 + + GSM117689 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 39 +Presenting Symptoms: SOB +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117689/GSM117689.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117689-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Branchial Cleft Cyst - 161512 + + GSM117690 + RNA + 1 + + Branchial Cleft Cyst + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Head & Neck, NOS +Clinical Question: Histology +Clinical Value: Metastatic Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117690/GSM117690.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117690-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 161513 + + GSM117691 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117691/GSM117691.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117691-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161516 + + GSM117692 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 31-35 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117692/GSM117692.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117692-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Parametrial Implant - 161518 + + GSM117693 + RNA + 1 + + Parametrial Implant + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 3a +Clinical N: X +Clinical M: 1 +Clinical Metastatic Sites: Other +Clinical Stage: 4B +Clinical Grade: 3 +Pathological Grade: 3 +Clinical Multiple Tumors: No +Pathological Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117693/GSM117693.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117693-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 161520 + + GSM117694 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 44 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Adenocarcinoma, clear cell type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117694/GSM117694.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117694-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 161521 + + GSM117695 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117695/GSM117695.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117695-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 161524 + + GSM117696 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117696/GSM117696.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117696-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 161527 + + GSM117697 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117697/GSM117697.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117697-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 161529 + + GSM117698 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological Question: Grade +Pathological Value: 2 +Pathological Question: T +Pathological Value: X +Pathological Question: N +Pathological Value: X +Pathological Question: M +Pathological Value: 1 +Pathological Question: Stage +Pathological Value: 4 +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Papillary serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117698/GSM117698.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117698-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2007-10-09 + + +Rectosigmoid - 170822 + + GSM117699 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma in adenomatous polyp + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117699/GSM117699.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117699-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 170823 + + GSM117700 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117700/GSM117700.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117700-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Small Intestine - 170824 + + GSM117701 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Small Intestine +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117701/GSM117701.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117701-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectosigmoid - 170825 + + GSM117702 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117702/GSM117702.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117702-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 170829 + + GSM117703 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117703/GSM117703.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117703-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 170830 + + GSM117704 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117704/GSM117704.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117704-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Thyroid - 170831 + + GSM117705 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117705/GSM117705.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117705-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174050 + + GSM117706 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117706/GSM117706.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117706-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectum - 174051 + + GSM117707 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117707/GSM117707.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117707-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 174052 + + GSM117708 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117708/GSM117708.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117708-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 174054 + + GSM117709 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117709/GSM117709.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117709-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectum - 174057 + + GSM117710 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117710/GSM117710.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117710-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174058 + + GSM117711 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117711/GSM117711.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117711-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 174059 + + GSM117712 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3A +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117712/GSM117712.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117712-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Renal pelvis - 174062 + + GSM117713 + RNA + 1 + + Renal pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis and Ureter +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117713/GSM117713.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117713-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 174063 + + GSM117714 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117714/GSM117714.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117714-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174064 + + GSM117715 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 70 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117715/GSM117715.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117715-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 174931 + + GSM117716 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117716/GSM117716.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117716-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 174934 + + GSM117717 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Question: T +Pathological Value: 3c +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3C +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117717/GSM117717.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117717-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 174936 + + GSM117718 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117718/GSM117718.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117718-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 174937 + + GSM117719 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117719/GSM117719.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117719-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 174938 + + GSM117720 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 47 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117720/GSM117720.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117720-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174939 + + GSM117721 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 1b +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117721/GSM117721.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117721-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 174940 + + GSM117722 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117722/GSM117722.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117722-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Thyroid - 174942 + + GSM117723 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117723/GSM117723.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117723-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 174943 + + GSM117724 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117724/GSM117724.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117724-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 174944 + + GSM117725 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Primary Site: Kidney +Pathological Question: Histology +Pathological Value: Solitary fibrous tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117725/GSM117725.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117725-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Prostate - 178552 + + GSM117726 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117726/GSM117726.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117726-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Prostate - 178554 + + GSM117727 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 140 +PSA: Elevated +Cancer discovered by digital exam?: No +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117727/GSM117727.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117727-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 178555 + + GSM117728 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117728/GSM117728.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117728-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 180948 + + GSM117729 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 2a +Clinical N: 0 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117729/GSM117729.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117729-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 180955 + + GSM117730 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117730/GSM117730.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117730-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 182730 + + GSM117731 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Relapse Since Primary Treatment: Yes +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 3 +Primary Site: Breast +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117731/GSM117731.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117731-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Soft Tissue of thigh - 184811 + + GSM117732 + RNA + 1 + + Soft Tissue of thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Soft Tissue of thigh +Histology: Myxoid liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117732/GSM117732.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117732-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Rectosigmoid - 184813 + + GSM117734 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Retreatment Multiple Tumors: No +Retreatment Stage During or Following Multimodality Therapy: Yes +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117734/GSM117734.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117734-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Thyroid - 184814 + + GSM117735 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 10-20 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117735/GSM117735.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117735-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Retroperitoneal Mass - 184818 + + GSM117736 + RNA + 1 + + Retroperitoneal Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal pain +Primary Site: Ovary +Histology: Metastatic Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117736/GSM117736.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117736-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 184819 + + GSM117737 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological Question: Stage +Pathological Value: No AJCC Staging Scheme for this Site/Histology +Pathological Question: Grade +Pathological Value: 4 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Pathological Question: Symptoms +Pathological Value: Excessive bleeding +Pathological Question: Symptoms +Pathological Value: Bloating +Primary Site: Endometrium +Pathological Question: Histology +Pathological Value: Undifferentiated endometrial sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117737/GSM117737.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117737-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184820 + + GSM117738 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117738/GSM117738.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117738-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 184821 + + GSM117739 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117739/GSM117739.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117739-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Spleen - 184824 + + GSM117740 + RNA + 1 + + Spleen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical Question: Stage +Clinical Value: No AJCC Staging Scheme for this site/histology +Primary Site: Unknown +Clinical Question: Histology +Clinical Value: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117740/GSM117740.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117740-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Prostate - 184830 + + GSM117741 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 66 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117741/GSM117741.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117741-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184833 + + GSM117742 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117742/GSM117742.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117742-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184834 + + GSM117743 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117743/GSM117743.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117743-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Ovary - 184837 + + GSM117744 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117744/GSM117744.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117744-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 184839 + + GSM117745 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 210 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4d +Pathological N: 3a +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Inflammatory Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117745/GSM117745.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117745-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184841 + + GSM117746 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117746/GSM117746.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117746-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184842 + + GSM117747 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117747/GSM117747.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117747-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 184852 + + GSM117748 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Soft Tissue of back +Histology: Metastatic Malignant fibrous histiocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117748/GSM117748.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117748-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184857 + + GSM117749 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117749/GSM117749.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117749-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184858 + + GSM117750 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 56 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117750/GSM117750.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117750-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184862 + + GSM117751 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117751/GSM117751.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117751-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 184863 + + GSM117752 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucin-producing adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117752/GSM117752.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117752-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 184864 + + GSM117753 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117753/GSM117753.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117753-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Adrenal Gland - 184865 + + GSM117754 + RNA + 1 + + Adrenal Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site/histology +Primary Site: Adrenal Gland +Clinical Question: Histology +Clinical Value: Oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117754/GSM117754.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117754-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Small Intestine - 184867 + + GSM117755 + RNA + 1 + + Small Intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical Question: Stage +Clinical Value: No AJCC scheme for this site/histology +Primary Site: Small Intestine +Clinical Question: Histology +Clinical Value: Gastrointestinal Stromal Tumor (GIST) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117755/GSM117755.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117755-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2007-10-09 + + +Lung - 184869 + + GSM117756 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117756/GSM117756.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117756-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 187212 + + GSM117757 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117757/GSM117757.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117757-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 187213 + + GSM117758 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Mammogram: No +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117758/GSM117758.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117758-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 187214 + + GSM117759 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117759/GSM117759.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117759-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 187215 + + GSM117760 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117760/GSM117760.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117760-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 187217 + + GSM117761 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 57 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Cribiform Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117761/GSM117761.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117761-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2007-10-09 + + +Exocrine Pancreas - 187233 + + GSM117762 + RNA + 1 + + Exocrine Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Intraductal papillary mucinous carcinoma, invasive + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117762/GSM117762.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117762-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 187235 + + GSM117763 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Workplace or household smokers?: Yes +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117763/GSM117763.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117763-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lymph node - 20277 + + GSM117765 + RNA + 1 + + Lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Dysgerminoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117765/GSM117765.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117765-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 21775 + + GSM117766 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Other +Ethnic Background: Iranian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal and Lobular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117766/GSM117766.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117766-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Endometrium - 21786 + + GSM117767 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117767/GSM117767.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117767-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Omentum - 21787 + + GSM117768 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117768/GSM117768.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117768-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Brain - 21797 + + GSM117769 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Stage +Retreatment Value: No AJCC Scheme for this Site/Histology +Retreatment Question: Grade +Retreatment Value: 3 (WHO Classification) +Primary Site: Brain +Retreatment Question: Histology +Retreatment Value: Astrocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117769/GSM117769.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117769-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 21802 + + GSM117770 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117770/GSM117770.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117770-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Axillary Lymph Node - 21970 + + GSM117771 + RNA + 1 + + Axillary Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2a +Retreatment N: 1b +Retreatment M: 0 +Retreatment Stage: 3B +Retreatment Multiple Tumors: No +Retreatment Stage During or Following Multimodality Therapy: No +Primary Site: Melanoma of Skin +Histology: Metastatic Superficial spreading melanoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117771/GSM117771.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117771-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Lung - 4446 + + GSM117772 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117772/GSM117772.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117772-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Kidney - 8030 + + GSM117774 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117774/GSM117774.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117774-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Colon - 8031 + + GSM117775 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117775/GSM117775.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117775-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Uterus - 84145 + + GSM117776 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117776/GSM117776.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117776-tbl-1.txt + + + + + + + 2006-06-30 + 2006-07-07 + 2006-07-07 + + +Breast - 84189 + + GSM117777 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM117nnn/GSM117777/GSM117777.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM117777-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 112874 + + GSM137895 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137895/GSM137895.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137895-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 112877 + + GSM137896 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1b +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal and Lobular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137896/GSM137896.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137896-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 127823 + + GSM137897 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 159 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Rectosigmoid +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137897/GSM137897.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137897-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 127825 + + GSM137898 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137898/GSM137898.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137898-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Peritoneum - 127829 + + GSM137899 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Small Intestine +Clinical Question: Histology +Clinical Value: Metastatic Gastrointestinal stromal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137899/GSM137899.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137899-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 127837 + + GSM137900 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 75 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: is +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 0 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Intraductal papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137900/GSM137900.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137900-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Thyroid - 127838 + + GSM137901 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Minimally invasive follicular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137901/GSM137901.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137901-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Perihepatic adipose tissue - 133630 + + GSM137902 + RNA + 1 + + Perihepatic adipose tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: T +Retreatment Value: 3 +Retreatment Question: N +Retreatment Value: 1 +Retreatment Question: M +Retreatment Value: 1 +Retreatment Question: Stage +Retreatment Value: 4 +Retreatment Question: Metastatic Sites +Retreatment Value: Other +Retreatment Question: Grade +Retreatment Value: X +Primary Site: Gallbladder +Retreatment Question: Histology +Retreatment Value: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137902/GSM137902.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137902-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 133640 + + GSM137903 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137903/GSM137903.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137903-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 133643 + + GSM137904 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137904/GSM137904.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137904-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 133651 + + GSM137905 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137905/GSM137905.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137905-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 133656 + + GSM137906 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137906/GSM137906.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137906-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 133666 + + GSM137907 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137907/GSM137907.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137907-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 143656 + + GSM137908 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137908/GSM137908.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137908-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 154211 + + GSM137909 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: X +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: Unknown +Pathological Question: Grade +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: Yes +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Liver +Pathological Question: Histology +Pathological Value: Hepatocellular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137909/GSM137909.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137909-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 154213 + + GSM137910 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137910/GSM137910.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137910-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 154215 + + GSM137911 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137911/GSM137911.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137911-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 154216 + + GSM137912 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137912/GSM137912.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137912-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 154219 + + GSM137913 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 100 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137913/GSM137913.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137913-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 1641 + + GSM137914 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137914/GSM137914.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137914-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Omentum - 170804 + + GSM137915 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: T +Clinical Value: 3c +Clinical Question: N +Clinical Value: 1 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3C +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Peritoneum +Clinical Question: Histology +Clinical Value: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137915/GSM137915.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137915-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 170806 + + GSM137916 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137916/GSM137916.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137916-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 170809 + + GSM137917 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological Question: T +Pathological Value: X +Pathological Question: N +Pathological Value: X +Pathological Question: M +Pathological Value: 1 +Pathological Question: Metastatic Sites +Pathological Value: Ovary, omentum +Pathological Question: Stage +Pathological Value: 4 +Pathological Question: Grade +Pathological Value: X +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Exocrine pancreas +Pathological Question: Histology +Pathological Value: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137917/GSM137917.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137917-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 170811 + + GSM137918 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137918/GSM137918.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137918-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Urinary bladder - 170827 + + GSM137919 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137919/GSM137919.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137919-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Pelvic tumor - 170828 + + GSM137920 + RNA + 1 + + Pelvic tumor + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Metastatic Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137920/GSM137920.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137920-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 174056 + + GSM137921 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Rectum +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137921/GSM137921.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137921-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 174060 + + GSM137922 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 35 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137922/GSM137922.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137922-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Omentum - 177890 + + GSM137923 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: X +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137923/GSM137923.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137923-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 177892 + + GSM137924 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137924/GSM137924.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137924-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 177893 + + GSM137925 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137925/GSM137925.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137925-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 177894 + + GSM137926 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Nausea +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137926/GSM137926.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137926-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 177895 + + GSM137927 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137927/GSM137927.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137927-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 177896 + + GSM137928 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 48 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137928/GSM137928.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137928-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 178556 + + GSM137929 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3 +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137929/GSM137929.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137929-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Soft tissue of R thigh - 180934 + + GSM137930 + RNA + 1 + + Soft tissue of R thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Primary Site: Soft tissue of R Thigh +Histology: Synovial sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137930/GSM137930.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137930-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 181030 + + GSM137931 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137931/GSM137931.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137931-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Esophagus - 181035 + + GSM137932 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 1 +Pathological Question: Grade +Pathological Value: 2 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137932/GSM137932.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137932-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 184826 + + GSM137933 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137933/GSM137933.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137933-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 184832 + + GSM137934 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137934/GSM137934.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137934-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 184838 + + GSM137935 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Rectum +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137935/GSM137935.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137935-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 184844 + + GSM137936 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137936/GSM137936.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137936-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 184845 + + GSM137937 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137937/GSM137937.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137937-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Exocrine Pancreas - 184850 + + GSM137938 + RNA + 1 + + Exocrine Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137938/GSM137938.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137938-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 184853 + + GSM137939 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 47 +Mammogram: Yes +Oral contraceptives?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137939/GSM137939.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137939-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +GI Tract Connective Tissue - 184856 + + GSM137940 + RNA + 1 + + GI Tract Connective Tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: No +Clinical Question: Stage +Clinical Value: No AJCC staging for benign tumors +Primary Site: Stomach +Clinical Question: Histology +Clinical Value: Gastrointestinal stromal tumor, benign + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137940/GSM137940.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137940-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 184860 + + GSM137941 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137941/GSM137941.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137941-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Colon - 187218 + + GSM137942 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137942/GSM137942.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137942-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 187219 + + GSM137943 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137943/GSM137943.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137943-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 187220 + + GSM137944 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 235 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 3 +Pathological N: 2a +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137944/GSM137944.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137944-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 187222 + + GSM137945 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137945/GSM137945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137945-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 187225 + + GSM137946 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Kidney +Clinical Question: Histology +Clinical Value: Renal oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137946/GSM137946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137946-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 187229 + + GSM137947 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 37 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137947/GSM137947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137947-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 187230 + + GSM137948 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137948/GSM137948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137948-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 187232 + + GSM137949 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137949/GSM137949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137949-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 187234 + + GSM137950 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137950/GSM137950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137950-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Small bowel - 187236 + + GSM137951 + RNA + 1 + + Small bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Weight Loss +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Lung +Histology: Metastatic Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137951/GSM137951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137951-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Peritoneum - 187237 + + GSM137952 + RNA + 1 + + Peritoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137952/GSM137952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137952-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Breast - 187238 + + GSM137953 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137953/GSM137953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137953-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 191409 + + GSM137954 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Radiation +Pathological T: 1a +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Kidney +Histology: Collecting duct carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137954/GSM137954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137954-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 191411 + + GSM137955 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137955/GSM137955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137955-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 191412 + + GSM137956 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 52 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137956/GSM137956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137956-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 191413 + + GSM137957 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Ovary +Clinical Question: Histology +Clinical Value: Endometrioid tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137957/GSM137957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137957-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Pancreas - 191414 + + GSM137958 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137958/GSM137958.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137958-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 191415 + + GSM137959 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 107 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137959/GSM137959.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137959-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 191417 + + GSM137960 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137960/GSM137960.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137960-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 191418 + + GSM137961 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 43 +Clinical T: 1b +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137961/GSM137961.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137961-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 191419 + + GSM137962 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Clinical Question: T +Clinical Value: 2 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 2 +Clinical Question: Grade +Clinical Value: 2 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137962/GSM137962.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137962-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 191420 + + GSM137963 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 38 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137963/GSM137963.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137963-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectosigmoid colon - 191423 + + GSM137964 + RNA + 1 + + Rectosigmoid colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Pathological T: 3 +Pathological N: 2 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137964/GSM137964.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137964-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 191424 + + GSM137965 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal mass +Pathological T: 2c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137965/GSM137965.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137965-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Parotid gland - 191425 + + GSM137966 + RNA + 1 + + Parotid gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: X +Pathological Question: Stage +Pathological Value: Unknown +Pathological Question: Grade +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Parotid gland +Pathological Question: Histology +Pathological Value: Epithelial-myoepithelial carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137966/GSM137966.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137966-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 191427 + + GSM137967 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Presenting Symptoms: Black tarry stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137967/GSM137967.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137967-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 191429 + + GSM137968 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137968/GSM137968.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137968-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Omentum - 191432 + + GSM137969 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137969/GSM137969.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137969-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Pelvic mass - 191433 + + GSM137970 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2C +Clinical Grade: X +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Sex cord-gonadal stromal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137970/GSM137970.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137970-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Prostate - 193006 + + GSM137971 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +PSA: Elevated +# of years PSA Tested?: 6-10 +Clinical T: 2c +Clinical N: 0 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137971/GSM137971.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137971-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 194730 + + GSM137972 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 2 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137972/GSM137972.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137972-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 195179 + + GSM137973 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137973/GSM137973.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137973-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Small bowel - 195181 + + GSM137974 + RNA + 1 + + Small bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Metastatic Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137974/GSM137974.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137974-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 195182 + + GSM137975 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Hormonal Treatment +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Endometrium +Histology: Malignant Mixed mesodermal tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137975/GSM137975.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137975-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Bladder - 195183 + + GSM137976 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 0 +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137976/GSM137976.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137976-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 195186 + + GSM137977 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 51 +Clinical Question: T +Clinical Value: 3a +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Primary Site: Kidney +Clinical Question: Histology +Clinical Value: Malignant renal oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137977/GSM137977.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137977-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 195189 + + GSM137978 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137978/GSM137978.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137978-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Uterus - 195190 + + GSM137979 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Pathological T: 1c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137979/GSM137979.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137979-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Endometrium - 195195 + + GSM137980 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 48 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137980/GSM137980.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137980-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Sigmoid colon - 195196 + + GSM137981 + RNA + 1 + + Sigmoid colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137981/GSM137981.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137981-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Omentum - 195197 + + GSM137982 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: X +Clinical M: 0 +Clinical Stage: 3C +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137982/GSM137982.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137982-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Ovary - 195198 + + GSM137983 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137983/GSM137983.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137983-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 195199 + + GSM137984 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137984/GSM137984.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137984-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectosigmoid colon - 199338 + + GSM137985 + RNA + 1 + + Rectosigmoid colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137985/GSM137985.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137985-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199343 + + GSM137986 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137986/GSM137986.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137986-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199344 + + GSM137987 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137987/GSM137987.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137987-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199351 + + GSM137988 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137988/GSM137988.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137988-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199352 + + GSM137989 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137989/GSM137989.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137989-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199355 + + GSM137990 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137990/GSM137990.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137990-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199356 + + GSM137991 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137991/GSM137991.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137991-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199358 + + GSM137992 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137992/GSM137992.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137992-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 199359 + + GSM137993 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137993/GSM137993.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137993-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 199360 + + GSM137994 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2A +Clinical Grade: 3 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Clinical ER: Positive +Clinical PR: Positive +Clinical HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137994/GSM137994.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137994-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199362 + + GSM137995 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137995/GSM137995.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137995-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Thoracic spine bone and intervertebral disc - 199363 + + GSM137996 + RNA + 1 + + Thoracic spine bone and intervertebral disc + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Metastatic Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137996/GSM137996.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137996-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon mesentery - 199365 + + GSM137997 + RNA + 1 + + Colon mesentery + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 129 +Prior Therapy: Chemotherapy +Pathological T: 1b +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Pelvic soft tissue +Histology: Metastatic Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137997/GSM137997.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137997-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 199366 + + GSM137998 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +Screening studies performed?: Yes +Diagnosis made by: Barium enema +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137998/GSM137998.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137998-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectum - 199374 + + GSM137999 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM137nnn/GSM137999/GSM137999.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM137999-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199375 + + GSM138000 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138000/GSM138000.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138000-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 199377 + + GSM138001 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138001/GSM138001.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138001-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Lung - 199378 + + GSM138002 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: X +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138002/GSM138002.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138002-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 199379 + + GSM138003 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138003/GSM138003.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138003-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Superior mediastinal lymph node - 199381 + + GSM138004 + RNA + 1 + + Superior mediastinal lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Voice changes +Pathological T: 1 +Pathological N: 1b +Pathological M: 0 +Pathological Stage: 1 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138004/GSM138004.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138004-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 199382 + + GSM138005 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138005/GSM138005.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138005-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199383 + + GSM138006 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138006/GSM138006.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138006-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 199384 + + GSM138007 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138007/GSM138007.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138007-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 199393 + + GSM138008 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 75 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138008/GSM138008.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138008-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 202033 + + GSM138009 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138009/GSM138009.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138009-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Islets of Langerhans - 202044 + + GSM138010 + RNA + 1 + + Islets of Langerhans + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Pathological Question: Grade +Pathological Value: 1 +Primary Site: Islets of Langerhans +Pathological Question: Histology +Pathological Value: Malignant gastrinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138010/GSM138010.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138010-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 205693 + + GSM138011 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 26-30 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2A +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138011/GSM138011.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138011-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 205695 + + GSM138012 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138012/GSM138012.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138012-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Penis - 205699 + + GSM138013 + RNA + 1 + + Penis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: T +Retreatment Value: 3 +Retreatment Question: N +Retreatment Value: X +Retreatment Question: M +Retreatment Value: X +Retreatment Question: Stage +Retreatment Value: Unknown +Retreatment Question: Grade +Retreatment Value: 1 +Primary Site: Penis +Retreatment Question: Histology +Retreatment Value: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138013/GSM138013.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138013-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 207170 + + GSM138014 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138014/GSM138014.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138014-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 209695 + + GSM138015 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138015/GSM138015.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138015-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 209701 + + GSM138016 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138016/GSM138016.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138016-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 209704 + + GSM138017 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138017/GSM138017.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138017-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 209705 + + GSM138018 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138018/GSM138018.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138018-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 209706 + + GSM138019 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138019/GSM138019.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138019-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 209707 + + GSM138020 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138020/GSM138020.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138020-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectosigmoid - 209708 + + GSM138021 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Vomiting +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138021/GSM138021.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138021-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 209716 + + GSM138022 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138022/GSM138022.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138022-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Thyroid - 209719 + + GSM138023 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138023/GSM138023.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138023-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Thyroid - 211391 + + GSM138024 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138024/GSM138024.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138024-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 211393 + + GSM138025 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138025/GSM138025.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138025-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2007-10-09 + + +Omentum - 211404 + + GSM138026 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138026/GSM138026.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138026-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215917 + + GSM138027 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Pathological T: 1mic +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Papillary Carcinoma (predominantly micropapillary pattern) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138027/GSM138027.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138027-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215927 + + GSM138028 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138028/GSM138028.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138028-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Soft tissue of hip - 215928 + + GSM138029 + RNA + 1 + + Soft tissue of hip + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Soft tissue of hip +Histology: Undifferentiated sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138029/GSM138029.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138029-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215929 + + GSM138030 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138030/GSM138030.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138030-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215931 + + GSM138031 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Mammogram: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138031/GSM138031.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138031-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215932 + + GSM138032 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138032/GSM138032.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138032-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215933 + + GSM138033 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138033/GSM138033.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138033-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215934 + + GSM138034 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 3a +Clinical N: X +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138034/GSM138034.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138034-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215935 + + GSM138035 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138035/GSM138035.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138035-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215936 + + GSM138036 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138036/GSM138036.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138036-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215937 + + GSM138037 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 27 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138037/GSM138037.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138037-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Prostate - 215940 + + GSM138038 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 56 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138038/GSM138038.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138038-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Rectosigmoid - 215941 + + GSM138039 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138039/GSM138039.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138039-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Testis - 215943 + + GSM138040 + RNA + 1 + + Testis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Clinical Serum Tumor Markers: S0 +Primary Site: Testis +Histology: Anaplastic seminoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138040/GSM138040.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138040-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 215944 + + GSM138041 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138041/GSM138041.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138041-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215946 + + GSM138042 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138042/GSM138042.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138042-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Liver - 215948 + + GSM138043 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138043/GSM138043.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138043-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 215949 + + GSM138044 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138044/GSM138044.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138044-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215950 + + GSM138045 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138045/GSM138045.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138045-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 215952 + + GSM138046 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138046/GSM138046.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138046-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Lung - 215953 + + GSM138047 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138047/GSM138047.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138047-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 231850 + + GSM138048 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138048/GSM138048.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138048-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 231855 + + GSM138049 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Retreatment T: 2 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2A +Retreatment Grade: X +Retreatment Multiple Tumors: No +Retreatment ER: Positive +Retreatment PR: Positive +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138049/GSM138049.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138049-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 231866 + + GSM138050 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Nausea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138050/GSM138050.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138050-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 231868 + + GSM138051 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 3 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138051/GSM138051.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138051-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Colon - 231874 + + GSM138052 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138052/GSM138052.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138052-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Kidney - 231875 + + GSM138053 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138053/GSM138053.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138053-tbl-1.txt + + + + + + + 2006-09-28 + 2006-09-28 + 2006-09-28 + + +Breast - 89262 + + GSM138054 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138054/GSM138054.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM138054-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 101144 + + GSM152564 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Hormonal Treatment +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Retreatment T: 2 +Retreatment N: X +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Retreatment ER: Positive +Retreatment PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152564/GSM152564.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152564-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Testis - 101154 + + GSM152565 + RNA + 1 + + Testis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 2B +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Pathological Serum Tumor Markers: S0 +Primary Site: Testis +Histology: Seminoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152565/GSM152565.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152565-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Cervical Lymph Node - 1013 + + GSM152566 + RNA + 1 + + Cervical Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 1 +Clinical Symptoms: A +Primary Site: Lymph Nodes +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152566/GSM152566.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152566-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ureter - 112886 + + GSM152567 + RNA + 1 + + Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Ureter +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152567/GSM152567.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152567-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 1231 + + GSM152568 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152568/GSM152568.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152568-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 1234 + + GSM152569 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: X +Pathological Stage: 3C +Pathological Grade: X +Primary Site: Breast +Histology: Ductal and Lobular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152569/GSM152569.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152569-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 127820 + + GSM152570 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Mammogram: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152570/GSM152570.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152570-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 127826 + + GSM152571 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 49 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152571/GSM152571.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152571-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectosigmoid - 127827 + + GSM152572 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152572/GSM152572.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152572-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 127830 + + GSM152573 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152573/GSM152573.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152573-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 127835 + + GSM152574 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal pain +Pathological Question: Stage +Pathological Value: 3C +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Papillary serous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152574/GSM152574.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152574-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 127839 + + GSM152575 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 59 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152575/GSM152575.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152575-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 127841 + + GSM152576 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152576/GSM152576.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152576-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 129660 + + GSM152577 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: X +Pathological M: 0 +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152577/GSM152577.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152577-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 129663 + + GSM152578 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152578/GSM152578.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152578-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 129666 + + GSM152579 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152579/GSM152579.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152579-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 129668 + + GSM152580 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, spindle cell type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152580/GSM152580.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152580-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 129669 + + GSM152581 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152581/GSM152581.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152581-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 129670 + + GSM152582 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152582/GSM152582.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152582-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic mass - 129671 + + GSM152583 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bloating +Pathological Question: T +Pathological Value: 2B +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2B +Pathological Question: Grade +Pathological Value: 1 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Ovarian remnant +Pathological Question: Histology +Pathological Value: Papillary endometrioid adenocarcinoma of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152583/GSM152583.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152583-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 133637 + + GSM152584 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Clinical T: X +Clinical N: X +Clinical M: 1 +Clinical Metastatic Sites: Hepatic +Clinical Stage: 4 +Clinical Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152584/GSM152584.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152584-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 133639 + + GSM152585 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 31 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152585/GSM152585.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152585-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic tumor - 143653 + + GSM152586 + RNA + 1 + + Pelvic tumor + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152586/GSM152586.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152586-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Lymph Node - 143663 + + GSM152587 + RNA + 1 + + Lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: X +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152587/GSM152587.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152587-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Lymph Node - 143669 + + GSM152588 + RNA + 1 + + Lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 4 +Retreatment N: 1 +Retreatment M: 0 +Retreatment Stage: 4 +Primary Site: Eye, NOS +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152588/GSM152588.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152588-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 144571 + + GSM152589 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 84 +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152589/GSM152589.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152589-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 151607 + + GSM152590 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Other +Ethnic Background: Unknown +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 50 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 26-30 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152590/GSM152590.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152590-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 151618 + + GSM152591 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152591/GSM152591.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152591-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 151625 + + GSM152592 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152592/GSM152592.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152592-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 152470 + + GSM152593 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Clinical Question: Stage +Clinical Value: No AJCC staging for benign tumors +Primary Site: Kidney +Clinical Question: Histology +Clinical Value: Renal oncocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152593/GSM152593.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152593-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 154218 + + GSM152594 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152594/GSM152594.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152594-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Stomach - 161522 + + GSM152595 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Have you ever had esophagitis/reflux?: Yes +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Tubular adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152595/GSM152595.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152595-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 161525 + + GSM152596 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2B +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152596/GSM152596.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152596-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 161530 + + GSM152597 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 53 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152597/GSM152597.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152597-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus and cervix - 161533 + + GSM152598 + RNA + 1 + + Uterus and cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 1 +Pathological Question: Metastatic Sites +Pathological Value: Omentum +Pathological Question: Stage +Pathological Value: 4B +Pathological Question: Grade +Pathological Value: 2 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Pathological Question: Symptoms +Primary Site: Overlapping lesion of cervix utri and corpus uteri +Pathological Question: Histology +Pathological Value: Papillary endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152598/GSM152598.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152598-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 161534 + + GSM152599 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152599/GSM152599.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152599-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Small intestine - 174053 + + GSM152600 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152600/GSM152600.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152600-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Stomach (Gastroesophageal junction) - 180941 + + GSM152601 + RNA + 1 + + Stomach (Gastroesophageal junction) + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Have you ever had esophagitis/reflux?: Yes +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152601/GSM152601.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152601-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 180944 + + GSM152602 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152602/GSM152602.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152602-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 180953 + + GSM152603 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152603/GSM152603.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152603-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Hepatic Flexure - 184846 + + GSM152604 + RNA + 1 + + Hepatic Flexure + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152604/GSM152604.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152604-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 184847 + + GSM152605 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Pathological T: is +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 0 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Intraductal papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152605/GSM152605.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152605-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 184848 + + GSM152606 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152606/GSM152606.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152606-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 184849 + + GSM152607 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological Question: Stage +Pathological Value: 3C +Pathological Question: Grade +Pathological Value: 3 +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Papillary serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152607/GSM152607.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152607-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 184851 + + GSM152608 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152608/GSM152608.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152608-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 184854 + + GSM152609 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152609/GSM152609.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152609-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 184870 + + GSM152610 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucin-producing adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152610/GSM152610.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152610-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 193010 + + GSM152611 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 39 +Presenting Symptoms: Dribbling +Presenting Symptoms: Urgency +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152611/GSM152611.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152611-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 193015 + + GSM152612 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152612/GSM152612.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152612-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 193020 + + GSM152613 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Screening studies performed?: Yes +Diagnosis made by: Stool blood test (guiac) +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152613/GSM152613.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152613-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 193021 + + GSM152614 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152614/GSM152614.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152614-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193022 + + GSM152615 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152615/GSM152615.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152615-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193024 + + GSM152616 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152616/GSM152616.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152616-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 193030 + + GSM152617 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152617/GSM152617.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152617-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193033 + + GSM152618 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 1c +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Cribiform Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152618/GSM152618.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152618-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Small Bowel - 193034 + + GSM152619 + RNA + 1 + + Small Bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Pathological T: 3 +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4 +Pathological Grade: X +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152619/GSM152619.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152619-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193035 + + GSM152620 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 26-30 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152620/GSM152620.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152620-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 193036 + + GSM152621 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 21-25 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152621/GSM152621.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152621-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 193038 + + GSM152622 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Hematuria +Presenting Symptoms: Nocturia +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152622/GSM152622.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152622-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 195184 + + GSM152623 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: X +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152623/GSM152623.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152623-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2008-04-24 + + +Lung - 195188 + + GSM152624 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Weight Loss +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152624/GSM152624.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152624-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Urinary Bladder - 199368 + + GSM152625 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152625/GSM152625.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152625-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 199372 + + GSM152626 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152626/GSM152626.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152626-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 199373 + + GSM152627 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152627/GSM152627.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152627-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Parotid gland - 199380 + + GSM152628 + RNA + 1 + + Parotid gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 2b +Pathological Question: M +Pathological Value: 1 +Pathological Question: Stage +Pathological Value: 4C +Pathological Question: Metastatic Sites +Pathological Value: Superior mediastinal lymph nodes +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Parotid gland +Pathological Question: Histology +Pathological Value: Mucoepidermoid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152628/GSM152628.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152628-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectum - 199386 + + GSM152629 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152629/GSM152629.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152629-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectum - 199387 + + GSM152630 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152630/GSM152630.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152630-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 199388 + + GSM152631 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 53 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152631/GSM152631.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152631-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 199390 + + GSM152632 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152632/GSM152632.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152632-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Thyroid - 199391 + + GSM152633 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 4a +Pathological N: 1a +Pathological M: X +Pathological Stage: 4A +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152633/GSM152633.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152633-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 202030 + + GSM152634 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152634/GSM152634.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152634-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 202031 + + GSM152635 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152635/GSM152635.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152635-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Vulva - 202032 + + GSM152636 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152636/GSM152636.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152636-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 202037 + + GSM152637 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152637/GSM152637.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152637-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 202038 + + GSM152638 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3a +Retreatment N: 0 +Retreatment M: 1 +Retreatment Metastatic Sites: Peritoneum +Retreatment Stage: 4B +Retreatment Grade: 3 +Retreatment Multiple Tumors: No +Primary Site: Endometrium +Histology: Metastatic Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152638/GSM152638.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152638-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 202041 + + GSM152639 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Clinical Stage: 2 +Clinical Symptoms: A +Primary Site: Small intestine +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152639/GSM152639.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152639-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 202042 + + GSM152640 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152640/GSM152640.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152640-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 202043 + + GSM152641 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152641/GSM152641.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152641-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 202046 + + GSM152642 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152642/GSM152642.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152642-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 202048 + + GSM152643 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 34 +Prior Therapy: Surgical +Pathological T: 2b +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Osseous +Pathological Stage: 4B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152643/GSM152643.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152643-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Endometrium - 205703 + + GSM152644 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152644/GSM152644.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152644-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 205705 + + GSM152645 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152645/GSM152645.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152645-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 207532 + + GSM152646 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal mass +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152646/GSM152646.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152646-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic lymph node - 207533 + + GSM152647 + RNA + 1 + + Pelvic lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical Stage: Unknown +Primary Site: Lymph Nodes +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152647/GSM152647.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152647-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 207536 + + GSM152648 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Presenting Symptoms: Abdominal pain +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Peritoneum +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152648/GSM152648.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152648-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 207537 + + GSM152649 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152649/GSM152649.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152649-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 207538 + + GSM152650 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Clinical Question: Stage +Clinical Value: No AJCC staging for benign tumors +Primary Site: Kidney +Clinical Question: Histology +Clinical Value: Angiomyolipoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152650/GSM152650.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152650-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Para aortic tissue - 207539 + + GSM152651 + RNA + 1 + + Para aortic tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Clinical T: 2 +Clinical N: 2 +Clinical M: 1a +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 3B +Clinical Multiple Tumours: Yes +Clinical Staged During or Following Multimodality Therapy: Yes +Clinical Serum Tumor Markers: S2 +Primary Site: Testis +Histology: Mixed germ cell tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152651/GSM152651.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152651-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 209696 + + GSM152652 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152652/GSM152652.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152652-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 209699 + + GSM152653 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152653/GSM152653.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152653-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 209709 + + GSM152654 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152654/GSM152654.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152654-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 209711 + + GSM152655 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Clinical Question: Grade +Clinical Value: 3 +Primary Site: Endometrium +Clinical Question: Histology +Clinical Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152655/GSM152655.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152655-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Testis - 209713 + + GSM152656 + RNA + 1 + + Testis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 20-30 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 5 +Clinical T: 2 +Clinical N: 1 +Clinical M: 0 +Clinical Stage: 2 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Testis +Histology: Mixed germ cell tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152656/GSM152656.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152656-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 209714 + + GSM152657 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Primary Site: Ovary +Histology: Benign serous cystadenoma of borderline malignancy + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152657/GSM152657.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152657-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 209717 + + GSM152658 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152658/GSM152658.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152658-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 209718 + + GSM152659 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152659/GSM152659.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152659-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Endometrium - 209720 + + GSM152660 + RNA + 1 + + Endometrium + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 49 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152660/GSM152660.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152660-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 211394 + + GSM152661 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 33 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152661/GSM152661.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152661-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 211395 + + GSM152662 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 2a +Clinical N: 1 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152662/GSM152662.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152662-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Thyroid - 211398 + + GSM152663 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 1 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152663/GSM152663.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152663-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 211400 + + GSM152664 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152664/GSM152664.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152664-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Vulva - 211405 + + GSM152665 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Clinical T: X +Clinical N: 0 +Clinical M: 0 +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152665/GSM152665.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152665-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 211407 + + GSM152666 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152666/GSM152666.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152666-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 211408 + + GSM152667 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152667/GSM152667.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152667-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 211409 + + GSM152668 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 0 +Pathological M: X +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152668/GSM152668.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152668-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2008-04-24 + + +Breast - 215930 + + GSM152669 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Mammogram: Yes +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152669/GSM152669.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152669-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 219567 + + GSM152670 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152670/GSM152670.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152670-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 219570 + + GSM152671 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Mixed endometrioid and serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152671/GSM152671.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152671-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 219571 + + GSM152672 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Malignant teratoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152672/GSM152672.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152672-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 219573 + + GSM152673 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152673/GSM152673.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152673-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 219574 + + GSM152674 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Endometrium +Histology: Mixed endometrioid and serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152674/GSM152674.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152674-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectum - 219576 + + GSM152675 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Diagnosis made by: Colonoscopy +Clinical T: X +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152675/GSM152675.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152675-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 219581 + + GSM152676 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152676/GSM152676.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152676-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 219582 + + GSM152677 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152677/GSM152677.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152677-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2008-04-24 + + +Breast - 219586 + + GSM152678 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152678/GSM152678.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152678-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 219590 + + GSM152679 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152679/GSM152679.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152679-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 219597 + + GSM152680 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152680/GSM152680.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152680-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 219599 + + GSM152681 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152681/GSM152681.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152681-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 219600 + + GSM152682 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152682/GSM152682.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152682-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 219604 + + GSM152683 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal mass +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152683/GSM152683.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152683-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 219605 + + GSM152684 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152684/GSM152684.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152684-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 219606 + + GSM152685 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0(i+) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152685/GSM152685.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152685-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Acetabulum and pelvic soft tissues - 226410 + + GSM152686 + RNA + 1 + + Acetabulum and pelvic soft tissues + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Prior Therapy: Chemotherapy +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: X +Pathological Question: Stage +Pathological Value: Unknown +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: Yes +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: Yes +Primary Site: Acetabulum +Pathological Question: Histology +Pathological Value: Dedifferentiated chondrosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152686/GSM152686.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152686-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 226413 + + GSM152687 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 38 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152687/GSM152687.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152687-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 226414 + + GSM152688 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152688/GSM152688.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152688-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 226415 + + GSM152689 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 36 +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152689/GSM152689.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152689-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 226416 + + GSM152690 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152690/GSM152690.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152690-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 226421 + + GSM152691 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 41-45 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152691/GSM152691.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152691-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 226422 + + GSM152692 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 41 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152692/GSM152692.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152692-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 226423 + + GSM152693 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152693/GSM152693.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152693-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 226424 + + GSM152694 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152694/GSM152694.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152694-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 226429 + + GSM152695 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152695/GSM152695.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152695-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 228530 + + GSM152696 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Relapse Since Primary Treatment: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152696/GSM152696.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152696-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +kidney - 228531 + + GSM152697 + RNA + 1 + + kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152697/GSM152697.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152697-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 228533 + + GSM152698 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 200 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 36-40 +Oral contraceptives?: No +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 3a +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152698/GSM152698.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152698-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 228536 + + GSM152699 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152699/GSM152699.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152699-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 228537 + + GSM152700 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152700/GSM152700.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152700-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 228538 + + GSM152701 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152701/GSM152701.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152701-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Jejunum - 228540 + + GSM152702 + RNA + 1 + + Jejunum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Night sweats +Presenting Symptoms: Weight loss +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 1 +Clinical Symptoms: B +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152702/GSM152702.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152702-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectosigmoid - 228542 + + GSM152703 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152703/GSM152703.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152703-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 228544 + + GSM152704 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 71 +Clinical T: 3a +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152704/GSM152704.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152704-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 228546 + + GSM152705 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 80 +Pathological T: 3a +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Granular cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152705/GSM152705.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152705-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 228549 + + GSM152706 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 80 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Papillary cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152706/GSM152706.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152706-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 231852 + + GSM152707 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Mammogram: Yes +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152707/GSM152707.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152707-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 231853 + + GSM152708 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 2 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152708/GSM152708.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152708-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 231863 + + GSM152709 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Metastatic Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152709/GSM152709.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152709-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectosigmoid - 231864 + + GSM152710 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152710/GSM152710.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152710-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 231867 + + GSM152711 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152711/GSM152711.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152711-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectum - 231869 + + GSM152712 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152712/GSM152712.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152712-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 231871 + + GSM152713 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152713/GSM152713.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152713-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 231877 + + GSM152714 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152714/GSM152714.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152714-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 231878 + + GSM152715 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152715/GSM152715.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152715-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 234312 + + GSM152716 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152716/GSM152716.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152716-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Urinary bladder - 234313 + + GSM152717 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152717/GSM152717.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152717-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Popliteal soft tissue - 234314 + + GSM152718 + RNA + 1 + + Popliteal soft tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Soft Tissue Sarcoma +Histology: Malignant fibrous histiocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152718/GSM152718.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152718-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 234315 + + GSM152719 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Have you ever been diagnosed as having HPV on your PAP smear?: Yes +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152719/GSM152719.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152719-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 235690 + + GSM152720 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Medullary Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152720/GSM152720.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152720-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 235691 + + GSM152721 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152721/GSM152721.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152721-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 235692 + + GSM152722 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bloating +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152722/GSM152722.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152722-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 235694 + + GSM152723 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 2a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152723/GSM152723.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152723-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 235695 + + GSM152724 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152724/GSM152724.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152724-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 235696 + + GSM152725 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152725/GSM152725.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152725-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 235699 + + GSM152726 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152726/GSM152726.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152726-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 235701 + + GSM152727 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152727/GSM152727.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152727-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 241165 + + GSM152728 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 3a +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Mixed type renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152728/GSM152728.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152728-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 241167 + + GSM152729 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152729/GSM152729.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152729-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 241168 + + GSM152730 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 26 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152730/GSM152730.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152730-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 241169 + + GSM152731 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152731/GSM152731.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152731-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Urinary Bladder - 241178 + + GSM152732 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Small cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152732/GSM152732.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152732-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 241181 + + GSM152733 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Bloating +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152733/GSM152733.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152733-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 241184 + + GSM152734 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152734/GSM152734.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152734-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 241187 + + GSM152735 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 1 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary mucinous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152735/GSM152735.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152735-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Parotid gland - 241188 + + GSM152736 + RNA + 1 + + Parotid gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Carcinoma of Skin +Histology: Metastatic Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152736/GSM152736.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152736-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 241191 + + GSM152737 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152737/GSM152737.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152737-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 241197 + + GSM152738 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Relapse Since Primary Treatment: No +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152738/GSM152738.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152738-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 241198 + + GSM152739 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Pathological Question: Grade +Pathological Value: X +Pathological Question: Multiple Tumors +Pathological Value: Yes +Primary Site: Endometrium +Pathological Question: Histology +Pathological Value: Metastatic Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152739/GSM152739.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152739-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 242910 + + GSM152740 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152740/GSM152740.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152740-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 242926 + + GSM152741 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152741/GSM152741.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152741-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Soft Tissue of Thigh - 242931 + + GSM152742 + RNA + 1 + + Soft Tissue of thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 2b +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Soft Tissue of Thigh +Histology: Sarcoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152742/GSM152742.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152742-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Retroperitoneal mass - 251035 + + GSM152743 + RNA + 1 + + Retroperitoneal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Hormonal Treatment +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Clinical T: X +Clinical N: X +Clinical M: 1 +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 4B +Clinical Grade: X +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152743/GSM152743.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152743-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pancreas - 251036 + + GSM152744 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Head of Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152744/GSM152744.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152744-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 251038 + + GSM152745 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152745/GSM152745.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152745-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251040 + + GSM152746 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152746/GSM152746.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152746-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251042 + + GSM152747 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152747/GSM152747.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152747-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic mass - 251043 + + GSM152748 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: Yes +Retreatment Question: Stage +Retreatment Value: No AJCC Staging scheme for this site and histology +Primary Site: Endometrium +Retreatment Question: Histology +Retreatment Value: Metastatic Endometrial stromal sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152748/GSM152748.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152748-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251044 + + GSM152749 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152749/GSM152749.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152749-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Rectosigmoid - 251046 + + GSM152750 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152750/GSM152750.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152750-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Cervix Uteri - 251047 + + GSM152751 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152751/GSM152751.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152751-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251048 + + GSM152752 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3A +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152752/GSM152752.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152752-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 251050 + + GSM152753 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152753/GSM152753.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152753-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 251052 + + GSM152754 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152754/GSM152754.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152754-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 251053 + + GSM152755 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenosquamous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152755/GSM152755.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152755-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 251054 + + GSM152756 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152756/GSM152756.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152756-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 251055 + + GSM152757 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 33 +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152757/GSM152757.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152757-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Soft tissue of arm - 254350 + + GSM152758 + RNA + 1 + + Soft tissue of arm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Presenting Symptoms: Persistent Cough +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: X +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Metastatic Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152758/GSM152758.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152758-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254354 + + GSM152759 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152759/GSM152759.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152759-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Liver - 254357 + + GSM152760 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152760/GSM152760.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152760-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254359 + + GSM152761 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152761/GSM152761.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152761-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 254360 + + GSM152762 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152762/GSM152762.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152762-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 254361 + + GSM152763 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152763/GSM152763.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152763-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Jejunum - 254371 + + GSM152764 + RNA + 1 + + Jejunum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Jejunum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152764/GSM152764.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152764-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Liver - 254373 + + GSM152765 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: 2 +Retreatment Multiple Tumors: No +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152765/GSM152765.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152765-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254374 + + GSM152766 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152766/GSM152766.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152766-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Lung - 254375 + + GSM152767 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Workplace or household smokers?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Synovial sarcoma, monophasic fibrous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152767/GSM152767.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152767-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254376 + + GSM152768 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152768/GSM152768.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152768-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 254388 + + GSM152769 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152769/GSM152769.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152769-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 254391 + + GSM152770 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152770/GSM152770.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152770-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Pelvic sidewall nodule - 254392 + + GSM152771 + RNA + 1 + + Pelvic sidewall nodule + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2B +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Dysgerminoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152771/GSM152771.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152771-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 254395 + + GSM152772 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152772/GSM152772.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152772-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Corpus Uteri - 254398 + + GSM152773 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152773/GSM152773.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152773-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 254403 + + GSM152774 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152774/GSM152774.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152774-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254436 + + GSM152775 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Relapse Since Primary Treatment: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152775/GSM152775.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152775-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 254441 + + GSM152776 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Hormonal Treatment +Relapse Since Primary Treatment: No +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Clinical T: 4b +Clinical N: 2a +Clinical M: 1 +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 4 +Clinical Grade: 3 +Clinical ER: Positive +Clinical PR: Positive +Clinical HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152776/GSM152776.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152776-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Chest wall mass - 254444 + + GSM152777 + RNA + 1 + + Chest wall mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Question: Stage +Clinical Value: 4 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Clinical Question: Symptoms +Clinical Value: A +Primary Site: Skin +Clinical Question: Histology +Clinical Value: Anaplastic large cell lymphoma, primary cutaneous type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152777/GSM152777.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152777-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 256874 + + GSM152778 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Hematuria +Presenting Symptoms: Nocturia +PSA: Normal +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: X +Clinical M: 0 +Clinical Stage: Unknown +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152778/GSM152778.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152778-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Urinary bladder - 256878 + + GSM152779 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 4a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152779/GSM152779.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152779-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 256880 + + GSM152780 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152780/GSM152780.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152780-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 256881 + + GSM152781 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152781/GSM152781.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152781-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 256882 + + GSM152782 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 3a +Pathological M: X +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152782/GSM152782.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152782-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Prostate - 256947 + + GSM152783 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Urgency +PSA: Normal +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152783/GSM152783.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152783-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 256950 + + GSM152784 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152784/GSM152784.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152784-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Humerus bone - 256954 + + GSM152785 + RNA + 1 + + Humerus bone + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Osseous +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Stomach +Histology: Metastatic Mucinous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152785/GSM152785.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152785-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 256956 + + GSM152786 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152786/GSM152786.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152786-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Pelvic Lymph Node - 256960 + + GSM152787 + RNA + 1 + + Pelvic lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b2 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4B +Pathological Grade: X +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152787/GSM152787.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152787-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Uterus - 256961 + + GSM152788 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152788/GSM152788.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152788-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-10-09 + + +Gastroesophageal Junction - 261174 + + GSM152789 + RNA + 1 + + Gastroesophageal junction + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Have you ever had esophagitis/reflux?: No +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3A +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Multiple Tumors +Pathological Value: No +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: No +Primary Site: Gastroesophageal Junction +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152789/GSM152789.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152789-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 262792 + + GSM152790 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152790/GSM152790.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152790-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Small intestine - 262793 + + GSM152791 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Weight loss +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 4 +Clinical Symptoms: B +Primary Site: Lymph Nodes +Histology: B-cell lymphoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152791/GSM152791.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152791-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 262794 + + GSM152792 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Mucinous cystic tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152792/GSM152792.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152792-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Vulva - 262795 + + GSM152793 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 6 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Vulva +Histology: Keratinizing squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152793/GSM152793.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152793-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 262802 + + GSM152794 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152794/GSM152794.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152794-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Ovary - 262803 + + GSM152795 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152795/GSM152795.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152795-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Uterus - 262807 + + GSM152796 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152796/GSM152796.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152796-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Urinary Bladder - 262809 + + GSM152797 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Surgical +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152797/GSM152797.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152797-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 262813 + + GSM152798 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152798/GSM152798.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152798-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Colon - 262819 + + GSM152799 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152799/GSM152799.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152799-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Omentum - 276657 + + GSM152800 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4B +Pathological Grade: X +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152800/GSM152800.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152800-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Kidney - 38212 + + GSM152801 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152801/GSM152801.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152801-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Thyroid - 84135 + + GSM152802 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 54 +Clinical T: 1 +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152802/GSM152802.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152802-tbl-1.txt + + + + + + + 2006-12-22 + 2007-01-03 + 2007-01-03 + + +Breast - 84139 + + GSM152803 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 26-30 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM152nnn/GSM152803/GSM152803.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM152803-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 1001 + + GSM179778 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179778/GSM179778.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179778-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 2489 + + GSM179779 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: X +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179779/GSM179779.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179779-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 6630 + + GSM179780 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 2 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179780/GSM179780.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179780-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pancreas - 78393 + + GSM179781 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179781/GSM179781.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179781-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 127824 + + GSM179782 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179782/GSM179782.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179782-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervix - 129657 + + GSM179783 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179783/GSM179783.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179783-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 170813 + + GSM179784 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Lung +Histology: Adenosquamous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179784/GSM179784.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179784-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Abdominal mass - 187248 + + GSM179785 + RNA + 1 + + Abdominal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: Stage +Retreatment Value: No AJCC Staging scheme for this site and histology +Retreatment Question: Metastatic Sites +Retreatment Value: Small bowel mesentery +Primary Site: Corpus Uteri +Retreatment Question: Histology +Retreatment Value: Metastatic Myxoid leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179785/GSM179785.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179785-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 187252 + + GSM179786 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179786/GSM179786.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179786-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 187253 + + GSM179787 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179787/GSM179787.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179787-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 187254 + + GSM179788 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179788/GSM179788.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179788-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 193000 + + GSM179789 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 50 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179789/GSM179789.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179789-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 193004 + + GSM179790 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179790/GSM179790.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179790-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 193026 + + GSM179791 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179791/GSM179791.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179791-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 193028 + + GSM179792 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Nocturia +PSA: Elevated +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179792/GSM179792.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179792-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 195191 + + GSM179793 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179793/GSM179793.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179793-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 195194 + + GSM179794 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 62 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179794/GSM179794.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179794-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 199354 + + GSM179795 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 34 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179795/GSM179795.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179795-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Connective tissue of abdomen - 199376 + + GSM179796 + RNA + 1 + + Connective tissue of abdomen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Clinical Question: Metastatic Sites +Clinical Value: None +Clinical Question: Multiple Tumors +Clinical Value: No +Primary Site: Connective tissue of abdomen +Clinical Question: Histology +Clinical Value: Gastrointestinal stromal tumor, uncertain malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179796/GSM179796.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179796-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 199394 + + GSM179797 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179797/GSM179797.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179797-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 199399 + + GSM179798 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Prior Therapy: Chemotherapy +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3B +Clinical Grade: 3 +Primary Site: Ovary +Histology: Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179798/GSM179798.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179798-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 199400 + + GSM179799 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179799/GSM179799.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179799-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Gallbladder - 199404 + + GSM179800 + RNA + 1 + + Gallbladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 1B +Pathological Question: Grade +Pathological Value: 2 +Primary Site: Gallbladder +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179800/GSM179800.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179800-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 199405 + + GSM179801 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous Cell Carcinoma, Non-Keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179801/GSM179801.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179801-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Corpus Uteri - 202039 + + GSM179802 + RNA + 1 + + Corpus Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179802/GSM179802.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179802-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 209690 + + GSM179803 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179803/GSM179803.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179803-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 209691 + + GSM179804 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179804/GSM179804.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179804-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 209692 + + GSM179805 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179805/GSM179805.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179805-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 209694 + + GSM179806 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: No +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179806/GSM179806.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179806-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 211371 + + GSM179807 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179807/GSM179807.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179807-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 211372 + + GSM179808 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: X +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma, endometrioid and papillary serous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179808/GSM179808.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179808-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 226427 + + GSM179809 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179809/GSM179809.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179809-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 231861 + + GSM179810 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179810/GSM179810.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179810-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pelvic mass - 234316 + + GSM179811 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: 2b +Retreatment N: X +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179811/GSM179811.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179811-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 234327 + + GSM179812 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 11-15 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Malignant granulosa cell tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179812/GSM179812.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179812-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 234329 + + GSM179813 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179813/GSM179813.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179813-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Acetabulum - 234331 + + GSM179814 + RNA + 1 + + Acetabulum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 56 +Prior Therapy: Chemotherapy +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2A +Pathological Question: Grade +Pathological Value: High +Pathological Question: Stage During or Following Multimodality Therapy +Pathological Value: Yes +Primary Site: Pelvis +Pathological Question: Histology +Pathological Value: Dedifferentiated chondrosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179814/GSM179814.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179814-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ileum - 235698 + + GSM179815 + RNA + 1 + + Ileum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Pathological Question: Stage +Pathological Value: 2 +Pathological Question: Symptoms +Pathological Value: A +Primary Site: Ileum +Pathological Question: Histology +Pathological Value: Anaplastic large cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179815/GSM179815.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179815-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 241175 + + GSM179816 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: No +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179816/GSM179816.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179816-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-10-09 + + +Omentum - 241183 + + GSM179817 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179817/GSM179817.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179817-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pelvic lymph node - 241186 + + GSM179818 + RNA + 1 + + Pelvic lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical Question: T +Clinical Value: X +Clinical Question: N +Clinical Value: X +Clinical Question: M +Clinical Value: X +Clinical Question: Stage +Clinical Value: Unknown +Clinical Question: Grade +Clinical Value: X +Primary Site: Skin of scrotum +Clinical Question: Histology +Clinical Value: Metastatic Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179818/GSM179818.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179818-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 241189 + + GSM179819 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179819/GSM179819.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179819-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 241194 + + GSM179820 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179820/GSM179820.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179820-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 241195 + + GSM179821 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179821/GSM179821.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179821-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 241196 + + GSM179822 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179822/GSM179822.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179822-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 241199 + + GSM179823 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179823/GSM179823.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179823-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 241200 + + GSM179824 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 85 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179824/GSM179824.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179824-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 242918 + + GSM179825 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179825/GSM179825.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179825-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 242921 + + GSM179826 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Metastatic Sites +Clinical Value: Lung +Primary Site: Myometrium +Clinical Question: Histology +Clinical Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179826/GSM179826.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179826-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 242924 + + GSM179827 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179827/GSM179827.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179827-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 242925 + + GSM179828 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179828/GSM179828.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179828-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 242928 + + GSM179829 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179829/GSM179829.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179829-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 242929 + + GSM179830 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179830/GSM179830.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179830-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 251039 + + GSM179831 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179831/GSM179831.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179831-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 251041 + + GSM179832 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179832/GSM179832.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179832-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 254351 + + GSM179833 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Sigmoidoscopy +Retreatment T: X +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179833/GSM179833.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179833-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 254355 + + GSM179834 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179834/GSM179834.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179834-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 254378 + + GSM179835 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179835/GSM179835.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179835-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 254387 + + GSM179836 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Question: Stage +Pathological Value: 3C +Pathological Question: Grade +Pathological Value: 3 +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Papillary serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179836/GSM179836.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179836-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 254393 + + GSM179837 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179837/GSM179837.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179837-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 254435 + + GSM179838 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179838/GSM179838.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179838-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 254440 + + GSM179839 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179839/GSM179839.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179839-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Liver - 254443 + + GSM179840 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 1 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179840/GSM179840.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179840-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 256870 + + GSM179841 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179841/GSM179841.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179841-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 256871 + + GSM179842 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 4 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179842/GSM179842.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179842-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 256872 + + GSM179843 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Hematuria +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179843/GSM179843.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179843-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 256875 + + GSM179844 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179844/GSM179844.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179844-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 256876 + + GSM179845 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Digital rectal exam +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179845/GSM179845.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179845-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 256885 + + GSM179846 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179846/GSM179846.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179846-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 256887 + + GSM179847 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179847/GSM179847.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179847-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 256888 + + GSM179848 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Pathological T: 1b +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Brain +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179848/GSM179848.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179848-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 256894 + + GSM179849 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Nocturia +PSA: Normal +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179849/GSM179849.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179849-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 256895 + + GSM179850 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Mixed epithelial tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179850/GSM179850.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179850-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 256944 + + GSM179851 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Adenocarcinoma with squamous metaplasia + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179851/GSM179851.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179851-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 256946 + + GSM179852 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: X +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Endometrium +Histology: Metastatic Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179852/GSM179852.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179852-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervix - 256948 + + GSM179853 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 43 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179853/GSM179853.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179853-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 256957 + + GSM179854 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 33 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Metaplastic Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179854/GSM179854.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179854-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 259729 + + GSM179855 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179855/GSM179855.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179855-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cecum - 259731 + + GSM179856 + RNA + 1 + + Cecum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179856/GSM179856.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179856-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Spleen - 259761 + + GSM179857 + RNA + 1 + + Spleen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Presenting Symptoms: Fever +Presenting Symptoms: Night sweats +Presenting Symptoms: Weight loss +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 1 +Clinical Symptoms: B +Primary Site: Spleen +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179857/GSM179857.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179857-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 259770 + + GSM179858 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179858/GSM179858.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179858-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 259771 + + GSM179859 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179859/GSM179859.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179859-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 259773 + + GSM179860 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179860/GSM179860.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179860-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 260847 + + GSM179861 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179861/GSM179861.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179861-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 260848 + + GSM179862 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179862/GSM179862.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179862-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 260852 + + GSM179863 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179863/GSM179863.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179863-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Abdominal mass - 260853 + + GSM179864 + RNA + 1 + + Abdominal mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: X +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179864/GSM179864.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179864-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Liver - 260857 + + GSM179865 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179865/GSM179865.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179865-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 260858 + + GSM179866 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179866/GSM179866.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179866-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 260859 + + GSM179867 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179867/GSM179867.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179867-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 262790 + + GSM179868 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179868/GSM179868.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179868-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pancreas - 262800 + + GSM179869 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 54 +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2B +Pathological Question: Grade +Pathological Value: 2 +Primary Site: Pancreas +Pathological Question: Histology +Pathological Value: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179869/GSM179869.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179869-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 262801 + + GSM179870 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Presenting Symptoms: Abdominal pain +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Primary Site: Ovary +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179870/GSM179870.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179870-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Thyroid - 262804 + + GSM179871 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 1 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179871/GSM179871.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179871-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 262806 + + GSM179872 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179872/GSM179872.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179872-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 262811 + + GSM179873 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 47 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179873/GSM179873.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179873-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Urinary Bladder - 262812 + + GSM179874 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179874/GSM179874.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179874-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Parotid gland - 262814 + + GSM179875 + RNA + 1 + + Parotid gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological Question: T +Pathological Value: 4a +Pathological Question: N +Pathological Value: 2b +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 4A +Pathological Question: Grade +Pathological Value: 4 +Primary Site: Parotid gland +Pathological Question: Histology +Pathological Value: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179875/GSM179875.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179875-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Abdominal/Pelvic Tissue - 262815 + + GSM179876 + RNA + 1 + + Abdominal/Pelvic Tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Retreatment Question: Stage +Retreatment Value: No AJCC Staging scheme for this site and histology +Retreatment Question: Grade +Retreatment Value: High +Primary Site: Endometrium +Retreatment Question: Histology +Retreatment Value: Metastatic Spindle Cell Sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179876/GSM179876.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179876-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Conncective tissue of abdomen - 262821 + + GSM179877 + RNA + 1 + + Conncective tissue of abdomen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Primary Site: Conncective tissue of abdomen +Pathological Question: Histology +Pathological Value: Gastrointestinal stromal tumor, uncertain malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179877/GSM179877.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179877-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 262824 + + GSM179878 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Primary Site: Ovary +Histology: Undifferentiated carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179878/GSM179878.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179878-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 262825 + + GSM179879 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179879/GSM179879.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179879-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 262827 + + GSM179880 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179880/GSM179880.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179880-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 262828 + + GSM179881 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179881/GSM179881.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179881-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 262829 + + GSM179882 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179882/GSM179882.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179882-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 262830 + + GSM179883 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179883/GSM179883.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179883-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Esophagus - 267090 + + GSM179884 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3 +Pathological Question: Grade +Pathological Value: 2 +Primary Site: Gastroesophageal Junction +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179884/GSM179884.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179884-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267091 + + GSM179885 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Pathological T: 1a +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179885/GSM179885.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179885-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267092 + + GSM179886 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 365 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Medullary Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179886/GSM179886.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179886-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267093 + + GSM179887 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179887/GSM179887.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179887-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267096 + + GSM179888 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 11-15 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: 3 +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 2A +Retreatment Grade: X +Retreatment Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179888/GSM179888.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179888-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267098 + + GSM179889 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179889/GSM179889.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179889-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Ovary - 267101 + + GSM179890 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179890/GSM179890.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179890-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267104 + + GSM179891 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 21-25 +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179891/GSM179891.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179891-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267105 + + GSM179892 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179892/GSM179892.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179892-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 267109 + + GSM179893 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 18 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Primary Site: Kidney +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179893/GSM179893.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179893-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectosigmoid - 267110 + + GSM179894 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179894/GSM179894.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179894-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267111 + + GSM179895 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 18 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 1c +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179895/GSM179895.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179895-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267114 + + GSM179896 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179896/GSM179896.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179896-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267116 + + GSM179897 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179897/GSM179897.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179897-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 267117 + + GSM179898 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179898/GSM179898.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179898-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 267118 + + GSM179899 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179899/GSM179899.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179899-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Esophagus - 267119 + + GSM179900 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3 +Pathological Question: Grade +Pathological Value: 3 +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179900/GSM179900.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179900-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 276643 + + GSM179901 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Nocturia +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179901/GSM179901.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179901-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 276644 + + GSM179902 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179902/GSM179902.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179902-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 276649 + + GSM179903 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Nocturia +Presenting Symptoms: Urgency +PSA: Normal +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179903/GSM179903.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179903-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 276652 + + GSM179904 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179904/GSM179904.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179904-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 276659 + + GSM179905 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179905/GSM179905.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179905-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 276662 + + GSM179906 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bloating +Retreatment T: 3b +Retreatment N: X +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179906/GSM179906.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179906-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervix - 276668 + + GSM179907 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 66 +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179907/GSM179907.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179907-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 276669 + + GSM179908 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179908/GSM179908.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179908-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 276671 + + GSM179909 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179909/GSM179909.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179909-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 276675 + + GSM179910 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179910/GSM179910.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179910-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 286630 + + GSM179911 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 80 +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179911/GSM179911.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179911-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 286631 + + GSM179912 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179912/GSM179912.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179912-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 286633 + + GSM179913 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 16-20 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Retreatment T: 3c +Retreatment N: 1 +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179913/GSM179913.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179913-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Pelvic Mass - 286634 + + GSM179914 + RNA + 1 + + Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179914/GSM179914.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179914-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 286641 + + GSM179915 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 65 +Clinical T: 1a +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Brain +Clinical Stage: 4 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179915/GSM179915.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179915-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Spinal cord - 286670 + + GSM179916 + RNA + 1 + + Spinal cord + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Spinal cord +Clinical Question: Histology +Clinical Value: Ependymoma, myxopapillary + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179916/GSM179916.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179916-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 286671 + + GSM179917 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Clinical T: 1c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1C +Clinical Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179917/GSM179917.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179917-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 286674 + + GSM179918 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179918/GSM179918.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179918-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 286675 + + GSM179919 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179919/GSM179919.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179919-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Rectum - 290716 + + GSM179920 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179920/GSM179920.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179920-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Urinary Bladder - 290717 + + GSM179921 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 180 +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179921/GSM179921.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179921-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290718 + + GSM179922 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179922/GSM179922.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179922-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Renal Pelvis - 290719 + + GSM179923 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 0a +Clinical Grade: 2 +Primary Site: Renal Pelvis +Histology: Papillary transitional cell carcinoma, non-invasive + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179923/GSM179923.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179923-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290720 + + GSM179924 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179924/GSM179924.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179924-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290721 + + GSM179925 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179925/GSM179925.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179925-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Urinary Bladder - 290723 + + GSM179926 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179926/GSM179926.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179926-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervical Lymph Node - 290727 + + GSM179927 + RNA + 1 + + Cervical Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Fever +Presenting Symptoms: Lymphadenopathy +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 4 +Clinical Symptoms: B +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Diffuse large B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179927/GSM179927.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179927-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290728 + + GSM179928 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179928/GSM179928.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179928-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 290729 + + GSM179929 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179929/GSM179929.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179929-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 290730 + + GSM179930 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179930/GSM179930.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179930-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 290731 + + GSM179931 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179931/GSM179931.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179931-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 290733 + + GSM179932 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Mammogram: No +Oral contraceptives?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179932/GSM179932.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179932-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 298138 + + GSM179933 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 40 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: is +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 0 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Intraductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179933/GSM179933.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179933-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 305114 + + GSM179934 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179934/GSM179934.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179934-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 305116 + + GSM179935 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179935/GSM179935.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179935-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 305124 + + GSM179936 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179936/GSM179936.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179936-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 305128 + + GSM179937 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Constipation +Presenting Symptoms: Nausea +Presenting Symptoms: Vomiting +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179937/GSM179937.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179937-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 305131 + + GSM179938 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179938/GSM179938.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179938-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 305132 + + GSM179939 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 1 +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Metastatic Sites +Clinical Value: Lungs, Retroperitoneum, Bone +Primary Site: Corpus Uteri +Clinical Question: Histology +Clinical Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179939/GSM179939.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179939-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 308690 + + GSM179940 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179940/GSM179940.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179940-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Uterus - 308692 + + GSM179941 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 1 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179941/GSM179941.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179941-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 308693 + + GSM179942 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179942/GSM179942.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179942-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Omentum - 308696 + + GSM179943 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Metastatic Sites: Peritoneum +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179943/GSM179943.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179943-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Thyroid - 308702 + + GSM179944 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179944/GSM179944.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179944-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Iliac Lymph Node - 309397 + + GSM179945 + RNA + 1 + + Iliac Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: X +Retreatment N: 3 +Retreatment M: 0 +Retreatment Stage: 3C +Primary Site: Skin of vulva +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179945/GSM179945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179945-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 309402 + + GSM179946 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Mammogram: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179946/GSM179946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179946-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Thyroid - 309407 + + GSM179947 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Voice changes +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Multiple Tumours: Yes +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179947/GSM179947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179947-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Colon - 309409 + + GSM179948 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179948/GSM179948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179948-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 309412 + + GSM179949 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179949/GSM179949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179949-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 309415 + + GSM179950 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 3 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 31-35 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179950/GSM179950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179950-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Lung - 309420 + + GSM179951 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179951/GSM179951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179951-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Liver - 309425 + + GSM179952 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 27 +Clinical Question: T +Clinical Value: 1 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 1 +Clinical Question: Grade +Clinical Value: 2 +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: chemoembolization +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179952/GSM179952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179952-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Esophagus - 310512 + + GSM179953 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Radiation +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 11-15 +Presenting Symptoms: Difficulties in swallowing +Presenting Symptoms: Voice changes +Retreatment Question: Grade +Retreatment Value: X +Retreatment Question: T +Retreatment Value: 4a +Retreatment Question: N +Retreatment Value: 0 +Retreatment Question: M +Retreatment Value: 0 +Retreatment Question: Metastatic Sites +Retreatment Value: esophagus +Retreatment Question: Stage +Retreatment Value: 4A +Primary Site: Pyriform sinus +Retreatment Question: Histology +Retreatment Value: Metastatic Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179953/GSM179953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179953-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Prostate - 310528 + + GSM179954 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +PSA: Elevated +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Clinical Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179954/GSM179954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179954-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Kidney - 344191 + + GSM179955 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Chewing Tobacco +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179955/GSM179955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179955-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Cervix - 344194 + + GSM179956 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 2 +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179956/GSM179956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179956-tbl-1.txt + + + + + + + 2007-04-02 + 2007-04-06 + 2007-04-06 + + +Breast - 344197 + + GSM179957 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 41 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM179nnn/GSM179957/GSM179957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM179957-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 1046 + + GSM203622 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203622/GSM203622.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203622-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 5238 + + GSM203623 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Intracystic carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203623/GSM203623.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203623-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 84137 + + GSM203624 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203624/GSM203624.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203624-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 89120 + + GSM203625 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 24 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203625/GSM203625.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203625-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 101109 + + GSM203626 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203626/GSM203626.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203626-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 143651 + + GSM203627 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203627/GSM203627.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203627-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 151616 + + GSM203628 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: is +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 0 +Pathological Grade: X +Primary Site: Breast +Histology: Lobular carcinoma in-situ + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203628/GSM203628.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203628-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 154210 + + GSM203629 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Vaginal bleeding +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203629/GSM203629.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203629-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 161532 + + GSM203630 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203630/GSM203630.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203630-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Small bowel - 170807 + + GSM203631 + RNA + 1 + + Small bowel + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Presenting Symptoms: Vaginal bleeding +Retreatment T: 3c +Retreatment N: 0 +Retreatment M: X +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203631/GSM203631.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203631-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 170819 + + GSM203632 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203632/GSM203632.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203632-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Spleen - 181032 + + GSM203633 + RNA + 1 + + Spleen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical Stage: 4 +Clinical Symptoms: A +Primary Site: Spleen +Histology: Splenic marginal zone B-cell lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203633/GSM203633.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203633-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 181037 + + GSM203634 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203634/GSM203634.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203634-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 187243 + + GSM203635 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203635/GSM203635.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203635-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Omentum - 187245 + + GSM203636 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: T +Pathological Value: 3C +Pathological Question: N +Pathological Value: x +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3C +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Serous surface papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203636/GSM203636.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203636-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 187246 + + GSM203637 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203637/GSM203637.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203637-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 187251 + + GSM203638 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Abdominal pain +Pathological T: 1b +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Primary Site: Ovary +Histology: Mucinous cystic tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203638/GSM203638.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203638-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 193025 + + GSM203639 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203639/GSM203639.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203639-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 199395 + + GSM203640 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigars +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203640/GSM203640.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203640-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 205690 + + GSM203641 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203641/GSM203641.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203641-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 205691 + + GSM203642 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203642/GSM203642.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203642-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-10-09 + + +Lung - 205700 + + GSM203643 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203643/GSM203643.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203643-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 205701 + + GSM203644 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Renal Pelvis +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203644/GSM203644.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203644-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 205706 + + GSM203645 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203645/GSM203645.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203645-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 205709 + + GSM203646 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 58 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203646/GSM203646.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203646-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Rectum - 207530 + + GSM203647 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 150 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Diagnosis made by: Colonoscopy +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2A +Clinical Grade: 3 +Clinical Dukes Stage: B +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203647/GSM203647.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203647-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 207531 + + GSM203648 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203648/GSM203648.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203648-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Neck mass - 211374 + + GSM203649 + RNA + 1 + + Neck mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203649/GSM203649.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203649-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 211376 + + GSM203650 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 25 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203650/GSM203650.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203650-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 211382 + + GSM203651 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2a +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203651/GSM203651.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203651-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Hemidiaphragm - 211385 + + GSM203652 + RNA + 1 + + Hemidiaphragm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3 +Retreatment Grade: 3 +Primary Site: Retroperitoneum +Histology: Metastatic Dedifferentiated liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203652/GSM203652.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203652-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 211386 + + GSM203653 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203653/GSM203653.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203653-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Omentum - 211387 + + GSM203654 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: T +Pathological Value: 3c +Pathological Question: N +Pathological Value: X +Pathological Question: M +Pathological Value: X +Pathological Question: Stage +Pathological Value: Unknown +Primary Site: Peritoneum +Pathological Question: Histology +Pathological Value: Metastatic Serous surface papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203654/GSM203654.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203654-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 228541 + + GSM203655 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 36 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203655/GSM203655.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203655-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 228543 + + GSM203656 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 61-65 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 37 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Renal Pelvis +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203656/GSM203656.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203656-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 228547 + + GSM203657 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203657/GSM203657.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203657-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 231860 + + GSM203658 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Pathological T: 2 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203658/GSM203658.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203658-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 234318 + + GSM203659 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1a +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: X +Pathological Multiple Tumors: Yes +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203659/GSM203659.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203659-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 234323 + + GSM203660 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 34 +Clinical Question: T +Clinical Value: 3 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3A +Clinical Question: Grade +Clinical Value: 3 +Clinical Question: Multiple Tumors +Clinical Value: Yes +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Cholangiocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203660/GSM203660.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203660-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 234328 + + GSM203661 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 20-30 +Gender: Female +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 19 +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Primary Site: Ovary +Histology: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203661/GSM203661.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203661-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 235700 + + GSM203662 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 2 +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Osseous +Clinical Stage: 4 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203662/GSM203662.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203662-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 254389 + + GSM203663 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203663/GSM203663.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203663-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Brain - 254394 + + GSM203664 + RNA + 1 + + Brain + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Brain +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Lung +Histology: Metastatic Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203664/GSM203664.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203664-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 254397 + + GSM203665 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional(clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203665/GSM203665.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203665-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Stomach - 254399 + + GSM203666 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Asian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Primary Site: Stomach +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203666/GSM203666.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203666-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 254400 + + GSM203667 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203667/GSM203667.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203667-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 254401 + + GSM203668 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203668/GSM203668.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203668-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 254402 + + GSM203669 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 200 +Prior Therapy: Chemotherapy +Mammogram: No +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Pathological T: 4d +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Inflammatory Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203669/GSM203669.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203669-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Rectum - 254405 + + GSM203670 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203670/GSM203670.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203670-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 262818 + + GSM203671 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 1b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 1 +Retreatment Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203671/GSM203671.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203671-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 262820 + + GSM203672 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1B +Clinical Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203672/GSM203672.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203672-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 262826 + + GSM203673 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203673/GSM203673.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203673-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 267095 + + GSM203674 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 2 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203674/GSM203674.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203674-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pancreas - 276642 + + GSM203675 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Exocrine Pancreas +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203675/GSM203675.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203675-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 276695 + + GSM203676 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment Question: T +Retreatment Value: 3 +Retreatment Question: N +Retreatment Value: x +Retreatment Question: M +Retreatment Value: 1 +Retreatment Question: Metastatic Sites +Retreatment Value: Bone +Retreatment Question: Stage +Retreatment Value: 4 +Retreatment Question: Grade +Retreatment Value: X +Primary Site: Liver +Retreatment Question: Histology +Retreatment Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203676/GSM203676.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203676-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 284060 + + GSM203677 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203677/GSM203677.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203677-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Adrenal Gland - 284061 + + GSM203678 + RNA + 1 + + Adrenal Gland + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Adrenal Gland +Clinical Question: Histology +Clinical Value: Pheochromocytoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203678/GSM203678.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203678-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 286672 + + GSM203679 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203679/GSM203679.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203679-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 286673 + + GSM203680 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 32 +Pathological T: 3a +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203680/GSM203680.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203680-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ileum - 290715 + + GSM203681 + RNA + 1 + + Ileum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Pathological Question: Metastatic Sites +Pathological Value: Hepatic +Primary Site: Ileum +Pathological Question: Histology +Pathological Value: Carcinoid tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203681/GSM203681.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203681-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Jejunum - 290725 + + GSM203682 + RNA + 1 + + Jejunum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Immunotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Retreatment T: X +Retreatment N: 0 +Retreatment M: 1c +Retreatment Metastatic Sites: Pulmonary +Retreatment Stage: 4 +Primary Site: Melanoma of Skin +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203682/GSM203682.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203682-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Thyroid - 290726 + + GSM203683 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203683/GSM203683.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203683-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 290734 + + GSM203684 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203684/GSM203684.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203684-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 298074 + + GSM203685 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Pathological T: 1c +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203685/GSM203685.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203685-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 308691 + + GSM203686 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203686/GSM203686.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203686-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 308695 + + GSM203687 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203687/GSM203687.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203687-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 308699 + + GSM203688 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 54 +Screening studies performed?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203688/GSM203688.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203688-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Soft Tissue of Neck - 308701 + + GSM203689 + RNA + 1 + + Soft Tissue of Neck + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.1 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Clinical Question: Stage +Clinical Value: No AJCC staging for unknown primary +Primary Site: Unknown +Clinical Question: Histology +Clinical Value: Metastatic Keratinizing Squamous Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203689/GSM203689.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203689-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 308707 + + GSM203690 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Breast +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203690/GSM203690.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203690-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 309390 + + GSM203691 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203691/GSM203691.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203691-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 309391 + + GSM203692 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203692/GSM203692.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203692-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 309393 + + GSM203693 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 1 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203693/GSM203693.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203693-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 309394 + + GSM203694 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 24 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203694/GSM203694.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203694-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Axillary lymph node - 309395 + + GSM203695 + RNA + 1 + + Axillary lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Mammogram: Yes +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Metastatic Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203695/GSM203695.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203695-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 309406 + + GSM203696 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203696/GSM203696.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203696-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 309410 + + GSM203697 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203697/GSM203697.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203697-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Thyroid - 309411 + + GSM203698 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Primary Site: Thyroid +Histology: Medullary carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203698/GSM203698.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203698-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 309414 + + GSM203699 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203699/GSM203699.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203699-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 309417 + + GSM203700 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203700/GSM203700.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203700-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 309418 + + GSM203701 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: Yes +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological ER: Negative +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203701/GSM203701.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203701-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 309419 + + GSM203702 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203702/GSM203702.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203702-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pancreas - 309421 + + GSM203703 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 2 +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203703/GSM203703.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203703-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 310511 + + GSM203704 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203704/GSM203704.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203704-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 310513 + + GSM203705 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Sigmoidoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203705/GSM203705.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203705-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 310516 + + GSM203706 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Vaginal bleeding +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203706/GSM203706.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203706-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 310517 + + GSM203707 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203707/GSM203707.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203707-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 310519 + + GSM203708 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 153 +Prior Therapy: Chemotherapy +Mammogram: Yes +Pathological T: 1b +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203708/GSM203708.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203708-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 310520 + + GSM203709 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 10 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203709/GSM203709.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203709-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 310521 + + GSM203710 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 120 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Tubulo-papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203710/GSM203710.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203710-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 310525 + + GSM203711 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +PSA: Elevated +# of years PSA Tested?: 16-20 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203711/GSM203711.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203711-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 310526 + + GSM203712 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203712/GSM203712.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203712-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 311854 + + GSM203713 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203713/GSM203713.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203713-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Urinary Bladder - 311858 + + GSM203714 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Prior Therapy: Surgical +Pathological T: 2b +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203714/GSM203714.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203714-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 311859 + + GSM203715 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Dribbling +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 6-10 +Pathological T: 3b +Pathological N: 1 +Pathological M: X +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203715/GSM203715.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203715-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 311866 + + GSM203716 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 77 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Papillary Serous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203716/GSM203716.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203716-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 311869 + + GSM203717 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203717/GSM203717.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203717-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 311870 + + GSM203718 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 47 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Adenocarcinoma with mixed subtypes + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203718/GSM203718.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203718-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pelvic Mass - 311872 + + GSM203719 + RNA + 1 + + Pelvic Mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2B +Clinical Grade: 3 +Primary Site: Ovary +Histology: Metastatic Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203719/GSM203719.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203719-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Soft tissue of arm - 311876 + + GSM203720 + RNA + 1 + + Soft tissue of arm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 4 +Primary Site: Soft tissue of arm +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203720/GSM203720.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203720-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Soft Tissue Thigh - 311878 + + GSM203721 + RNA + 1 + + Soft Tissue Thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 210 +Prior Therapy: Radiation +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 4 +Clinical Staged During or Following Multimodality Therapy: Yes +Primary Site: Soft Tissue Thigh +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203721/GSM203721.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203721-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 317475 + + GSM203722 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Asian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 200 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203722/GSM203722.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203722-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 317481 + + GSM203723 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203723/GSM203723.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203723-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341507 + + GSM203724 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203724/GSM203724.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203724-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 341508 + + GSM203725 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2B +Primary Site: Ovary +Histology: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203725/GSM203725.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203725-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 341510 + + GSM203726 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 55 +Mammogram: Yes +Oophorectomy?: No +Pathological T: 3 +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203726/GSM203726.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203726-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 341513 + + GSM203727 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 29 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203727/GSM203727.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203727-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341516 + + GSM203728 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 1 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203728/GSM203728.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203728-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 341517 + + GSM203729 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203729/GSM203729.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203729-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 341522 + + GSM203730 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 49 +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203730/GSM203730.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203730-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341526 + + GSM203731 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: is +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 0 +Pathological Grade: 1 +Primary Site: Colon +Histology: Carcinoma in situ arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203731/GSM203731.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203731-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 341530 + + GSM203732 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 90 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203732/GSM203732.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203732-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341541 + + GSM203733 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203733/GSM203733.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203733-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Omentum - 341544 + + GSM203734 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203734/GSM203734.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203734-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 341546 + + GSM203735 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203735/GSM203735.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203735-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 341548 + + GSM203736 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203736/GSM203736.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203736-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 341549 + + GSM203737 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Clinical T: 2b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2B +Clinical Grade: X +Primary Site: Cervix Uteri +Histology: Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203737/GSM203737.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203737-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Urinary bladder - 341550 + + GSM203738 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203738/GSM203738.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203738-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pelvic mass - 341551 + + GSM203739 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Presenting Symptoms: Abdominal pain +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3B +Clinical Grade: 2 +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203739/GSM203739.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203739-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 341552 + + GSM203740 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 100 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: Yes +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203740/GSM203740.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203740-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 341553 + + GSM203741 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203741/GSM203741.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203741-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 341554 + + GSM203742 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 1b1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B1 +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203742/GSM203742.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203742-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 341555 + + GSM203743 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Vomiting +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203743/GSM203743.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203743-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 341556 + + GSM203744 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203744/GSM203744.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203744-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Sigmoid colon - 341558 + + GSM203745 + RNA + 1 + + Sigmoid colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological Question: Stage +Pathological Value: No AJCC scheme for unknown primary +Primary Site: Unknown +Pathological Question: Histology +Pathological Value: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203745/GSM203745.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203745-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 344186 + + GSM203746 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203746/GSM203746.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203746-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Retroperitoneum - 344193 + + GSM203747 + RNA + 1 + + Retroperitoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 10 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Retroperitoneum +Histology: Dedifferentiated liposarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203747/GSM203747.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203747-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 344195 + + GSM203748 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203748/GSM203748.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203748-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Mesenteric Lymph Node - 344203 + + GSM203749 + RNA + 1 + + Mesenteric Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 3 +Clinical Symptoms: A +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Follicular lymphoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203749/GSM203749.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203749-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 345983 + + GSM203750 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 34 +Pathological Question: T +Pathological Value: 1 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3C +Pathological Question: Grade +Pathological Value: 2 +Primary Site: Liver +Pathological Question: Histology +Pathological Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203750/GSM203750.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203750-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 345987 + + GSM203751 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Clinical Question: T +Clinical Value: 3 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 3A +Clinical Question: Grade +Clinical Value: 3 +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203751/GSM203751.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203751-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 345988 + + GSM203752 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203752/GSM203752.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203752-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Bladder - 345992 + + GSM203753 + RNA + 1 + + Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 48 +Pathological T: 4 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Prostate +Histology: Small Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203753/GSM203753.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203753-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 345997 + + GSM203754 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 51-55 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 87 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: Yes +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203754/GSM203754.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203754-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 346004 + + GSM203755 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Black tarry stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203755/GSM203755.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203755-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pectoral Muscle - 346005 + + GSM203756 + RNA + 1 + + Pectoral Muscle + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Hormonal Treatment +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Retreatment T: 2 +Retreatment N: 1a +Retreatment M: 0 +Retreatment Stage: 2B +Retreatment Grade: 3 +Retreatment ER: Negative +Retreatment PR: Negative +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Metastatic Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203756/GSM203756.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203756-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pelvic Tissue - 348055 + + GSM203757 + RNA + 1 + + Pelvic Tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Clinical Question: T +Clinical Value: x +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: Unknown +Clinical Question: Grade +Clinical Value: 3 +Primary Site: Endometrium +Clinical Question: Histology +Clinical Value: Metastatic Malignant Mixed Mullerian Tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203757/GSM203757.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203757-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 348057 + + GSM203758 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203758/GSM203758.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203758-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 348058 + + GSM203759 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological ER: Positive +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203759/GSM203759.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203759-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cerebellar tissue - 348059 + + GSM203760 + RNA + 1 + + Cerebellar tissue + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Pathological T: X +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Brain +Pathological Stage: 4 +Pathological Grade: X +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Lung +Histology: Metastatic Non-small cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203760/GSM203760.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203760-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pancreas - 348060 + + GSM203761 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Exocrine Pancreas +Histology: Ductal adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203761/GSM203761.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203761-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 348061 + + GSM203762 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Mixed endometrioid and serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203762/GSM203762.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203762-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 348062 + + GSM203763 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 33 +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203763/GSM203763.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203763-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 348063 + + GSM203764 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 9 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203764/GSM203764.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203764-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 348064 + + GSM203765 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 23 +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203765/GSM203765.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203765-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 348066 + + GSM203766 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 6 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 1 +Primary Site: Ovary +Histology: Mucinous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203766/GSM203766.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203766-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Thyroid - 348067 + + GSM203767 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 1 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3 +Primary Site: Thyroid +Histology: Papillary adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203767/GSM203767.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203767-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 348069 + + GSM203768 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1C +Clinical Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203768/GSM203768.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203768-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 348070 + + GSM203769 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203769/GSM203769.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203769-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 351885 + + GSM203770 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 37 +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203770/GSM203770.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203770-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 351887 + + GSM203771 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203771/GSM203771.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203771-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 362570 + + GSM203772 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203772/GSM203772.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203772-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Unspecified soft tissue from abdomen or pelvis - 362571 + + GSM203773 + RNA + 1 + + Unspecified soft tissue from abdomen or pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3c +Retreatment N: X +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Grade: X +Primary Site: Ovary +Histology: Metastatic Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203773/GSM203773.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203773-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Thyroid - 362572 + + GSM203774 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203774/GSM203774.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203774-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Liver - 362575 + + GSM203775 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 54 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203775/GSM203775.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203775-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 362581 + + GSM203776 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Pathological Question: Stage +Pathological Value: No AJCC scheme for this site and histology +Primary Site: Myometrium +Pathological Question: Histology +Pathological Value: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203776/GSM203776.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203776-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 362588 + + GSM203777 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 4 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203777/GSM203777.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203777-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 362600 + + GSM203778 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Hesitancy +Presenting Symptoms: Nocturia +Presenting Symptoms: Urgency +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 4 +Pathological N: X +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203778/GSM203778.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203778-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 362601 + + GSM203779 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 61-65 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203779/GSM203779.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203779-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Rectosigmoid - 362602 + + GSM203780 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 12 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203780/GSM203780.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203780-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 362603 + + GSM203781 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary serous cystadenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203781/GSM203781.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203781-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 362605 + + GSM203782 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 45 +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203782/GSM203782.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203782-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 362607 + + GSM203783 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203783/GSM203783.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203783-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 366607 + + GSM203784 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 124 +Prior Therapy: Chemotherapy +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203784/GSM203784.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203784-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 371430 + + GSM203785 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203785/GSM203785.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203785-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Prostate - 371433 + + GSM203786 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203786/GSM203786.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203786-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Lung - 371434 + + GSM203787 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Persistent Cough +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Mucinous bronchioloalveolar carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203787/GSM203787.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203787-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Rectum - 371435 + + GSM203788 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 25 +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Rectum +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203788/GSM203788.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203788-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 371436 + + GSM203789 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 54 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: X +Pathological Multiple Tumors: Yes +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203789/GSM203789.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203789-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 371438 + + GSM203790 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 83 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203790/GSM203790.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203790-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 371439 + + GSM203791 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Clinical T: 2b +Clinical N: 0 +Clinical M: 1 +Clinical Metastatic Sites: Pulmonary +Clinical Stage: 4B +Clinical Grade: 3 +Primary Site: Cervix Uteri +Histology: Small cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203791/GSM203791.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203791-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Breast - 371441 + + GSM203792 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 38 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 21-25 +Oophorectomy?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203792/GSM203792.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203792-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Urinary bladder - 371445 + + GSM203793 + RNA + 1 + + Urinary bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 3a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203793/GSM203793.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203793-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Omentum - 371446 + + GSM203794 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: Stage +Clinical Value: No AJCC Scheme for unknown primary +Primary Site: Unknown +Clinical Question: Histology +Clinical Value: Metastatic Mucinous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203794/GSM203794.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203794-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Ovary - 371447 + + GSM203795 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203795/GSM203795.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203795-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 383397 + + GSM203796 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203796/GSM203796.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203796-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Pelvic mass - 383398 + + GSM203797 + RNA + 1 + + Pelvic mass + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Pathological T: 3a +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Metastatic Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203797/GSM203797.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203797-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Uterus - 383401 + + GSM203798 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 54 +Pathological T: 1c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Malignant mixed Mullerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203798/GSM203798.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203798-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Cervix Uteri - 383409 + + GSM203799 + RNA + 1 + + Cervix Uteri + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological Staged During or Following Multimodality Therapy: Yes +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203799/GSM203799.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203799-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Colon - 383410 + + GSM203800 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203800/GSM203800.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203800-tbl-1.txt + + + + + + + 2007-06-22 + 2007-06-25 + 2007-06-25 + + +Kidney - 388910 + + GSM203801 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM203nnn/GSM203801/GSM203801.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM203801-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 267100 + + GSM231868 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231868/GSM231868.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231868-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 305117 + + GSM231869 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 2 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231869/GSM231869.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231869-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Fallopian Tube - 309423 + + GSM231870 + RNA + 1 + + Fallopian Tube + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 4 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Fallopian Tube +Histology: Serous cystadenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231870/GSM231870.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231870-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Cervix - 311868 + + GSM231871 + RNA + 1 + + Cervix + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Have you ever been diagnosed as having HPV on your PAP smear?: No +Pathological T: 3a +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma, non-keratinizing + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231871/GSM231871.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231871-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 317490 + + GSM231872 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +PSA: Elevated +# of years PSA Tested?: 11-15 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231872/GSM231872.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231872-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 341534 + + GSM231873 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 120 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231873/GSM231873.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231873-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 344201 + + GSM231874 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 42 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231874/GSM231874.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231874-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 345961 + + GSM231875 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Black tarry stools +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Presenting Symptoms: Nausea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231875/GSM231875.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231875-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 345963 + + GSM231876 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231876/GSM231876.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231876-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 345966 + + GSM231877 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231877/GSM231877.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231877-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 345968 + + GSM231878 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231878/GSM231878.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231878-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 345971 + + GSM231879 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231879/GSM231879.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231879-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 345975 + + GSM231880 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Hispanic +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231880/GSM231880.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231880-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 345976 + + GSM231881 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 48 +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 2c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231881/GSM231881.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231881-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 345993 + + GSM231882 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 2b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231882/GSM231882.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231882-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Liver - 345994 + + GSM231883 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Rectum +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231883/GSM231883.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231883-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 345995 + + GSM231884 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 48 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: Yes +Pathological T: 1c +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231884/GSM231884.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231884-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 346001 + + GSM231885 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231885/GSM231885.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231885-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 346010 + + GSM231886 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 30-40 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 56 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231886/GSM231886.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231886-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 346011 + + GSM231887 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231887/GSM231887.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231887-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 362584 + + GSM231888 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 111 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231888/GSM231888.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231888-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 362589 + + GSM231889 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 26 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231889/GSM231889.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231889-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Liver - 362591 + + GSM231890 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Clinical Question: T +Clinical Value: 2 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 2 +Clinical Question: Grade +Clinical Value: 2 +Primary Site: Liver +Clinical Question: Histology +Clinical Value: Hepatocellular carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231890/GSM231890.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231890-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 362593 + + GSM231891 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 1 +Primary Site: Lung +Histology: Neuroendocrine carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231891/GSM231891.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231891-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 362594 + + GSM231892 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231892/GSM231892.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231892-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 362596 + + GSM231893 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231893/GSM231893.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231893-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 362598 + + GSM231894 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231894/GSM231894.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231894-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 362599 + + GSM231895 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231895/GSM231895.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231895-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 362608 + + GSM231896 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 4 +Primary Site: Lung +Histology: Large cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231896/GSM231896.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231896-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 362609 + + GSM231897 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.7 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 37 +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231897/GSM231897.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231897-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 366583 + + GSM231898 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231898/GSM231898.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231898-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 366585 + + GSM231899 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231899/GSM231899.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231899-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 366592 + + GSM231900 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Clinical Multiple Tumors: Yes +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231900/GSM231900.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231900-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Supraclavicular lymph node - 366594 + + GSM231901 + RNA + 1 + + Supraclavicular lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Lymphadenopathy +Have you ever had mononucleousis?: No +Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No +Clinical Stage: 2 +Clinical Symptoms: A +Primary Site: Lymph Nodes (Nodal Lymphoma) +Histology: Malignant lymphoma, small B-cell lymphocytic + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231901/GSM231901.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231901-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 366595 + + GSM231902 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 182 +Prior Therapy: Chemotherapy +Prior Therapy: Hormonal Treatment +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 4b +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: Yes +Pathological ER: Negative +Pathological PR: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231902/GSM231902.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231902-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 366597 + + GSM231903 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 13 +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Lymph Nodes +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Kidney +Histology: Renal cell carcinoma, sarcomatoid + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231903/GSM231903.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231903-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 366598 + + GSM231904 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 4 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231904/GSM231904.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231904-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 366602 + + GSM231905 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231905/GSM231905.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231905-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Urinary Bladder - 366609 + + GSM231906 + RNA + 1 + + Urinary Bladder + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Primary Site: Urinary Bladder +Histology: Urothelial (transitional cell) carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231906/GSM231906.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231906-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 366614 + + GSM231907 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 8 +Presenting Symptoms: SOB +Workplace or household smokers?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231907/GSM231907.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231907-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 366620 + + GSM231908 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231908/GSM231908.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231908-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ureter - 383399 + + GSM231909 + RNA + 1 + + Ureter + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 3 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 3 +Clinical Multiple Tumours: Yes +Primary Site: Renal Pelvis +Histology: Papillary transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231909/GSM231909.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231909-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 383404 + + GSM231910 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231910/GSM231910.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231910-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 383405 + + GSM231911 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 1 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231911/GSM231911.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231911-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 383408 + + GSM231912 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 210 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 4 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231912/GSM231912.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231912-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 383413 + + GSM231913 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Bloating +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Primary Site: Ovary +Histology: Mucinous cystic tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231913/GSM231913.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231913-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 383890 + + GSM231914 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : Yes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231914/GSM231914.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231914-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 383903 + + GSM231915 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Constipation +Presenting Symptoms: Diarrhea +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231915/GSM231915.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231915-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 383906 + + GSM231916 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Pathological T: 1b +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231916/GSM231916.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231916-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 383909 + + GSM231917 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 26-30 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231917/GSM231917.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231917-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 383911 + + GSM231918 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231918/GSM231918.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231918-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 383913 + + GSM231919 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 15 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231919/GSM231919.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231919-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 384490 + + GSM231920 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 39 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231920/GSM231920.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231920-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 384492 + + GSM231921 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231921/GSM231921.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231921-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Pancreas - 384493 + + GSM231922 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Cigars +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 38 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 4 +Primary Site: Exocrine Pancreas +Histology: Carcinoma with osteoclast-like giant cells + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231922/GSM231922.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231922-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Retroperitoneum - 384494 + + GSM231923 + RNA + 1 + + Retroperitoneum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Retroperitoneum +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231923/GSM231923.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231923-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 384496 + + GSM231924 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 17 +Presenting Symptoms: Vaginal bleeding +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3B +Clinical Grade: 3 +Primary Site: Ovary +Histology: Clear cell adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231924/GSM231924.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231924-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 384499 + + GSM231925 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 11 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231925/GSM231925.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231925-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 384502 + + GSM231926 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 58 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231926/GSM231926.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231926-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 384503 + + GSM231927 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 64 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231927/GSM231927.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231927-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 384504 + + GSM231928 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 41 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231928/GSM231928.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231928-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 384507 + + GSM231929 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231929/GSM231929.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231929-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 384508 + + GSM231930 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 37 +Presenting Symptoms: Abdominal pain +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 3 +Primary Site: Ovary +Histology: Sertoli-Leydig cell tumor, poorly differentiated + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231930/GSM231930.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231930-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 384509 + + GSM231931 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231931/GSM231931.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231931-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 388891 + + GSM231932 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 6-10 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 0-5 +Pathological T: 1c +Pathological N: 1mi +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231932/GSM231932.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231932-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 388892 + + GSM231933 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3b +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Pulmonary +Pathological Stage: 4 +Pathological Grade: 4 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231933/GSM231933.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231933-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Rectum - 388893 + + GSM231934 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 19 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Diarrhea +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 2 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231934/GSM231934.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231934-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 388900 + + GSM231935 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: X +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231935/GSM231935.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231935-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 388907 + + GSM231936 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231936/GSM231936.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231936-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 388908 + + GSM231937 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3 +Retreatment N: 1 +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231937/GSM231937.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231937-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 388909 + + GSM231938 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231938/GSM231938.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231938-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 388935 + + GSM231939 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 9 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 2 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231939/GSM231939.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231939-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Liver - 388936 + + GSM231940 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological Question: T +Pathological Value: 3 +Pathological Question: N +Pathological Value: 0 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 3A +Pathological Question: Grade +Pathological Value: 3 +Pathological Question: Symptoms +Primary Site: Liver +Pathological Question: Histology +Pathological Value: Cholangiocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231940/GSM231940.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231940-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Stomach - 388950 + + GSM231941 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Have you ever had esophagitis/reflux?: No +Clinical Question: Stage +Clinical Value: No AJCC Scheme for this site and histology +Primary Site: Stomach +Clinical Question: Histology +Clinical Value: Solitary fibrous tumor, benign + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231941/GSM231941.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231941-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 388951 + + GSM231942 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 76 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231942/GSM231942.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231942-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Thyroid - 388953 + + GSM231943 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Difficulties in swallowing +Pathological T: 1 +Pathological N: 1a +Pathological M: X +Pathological Stage: Unknown +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231943/GSM231943.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231943-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 388954 + + GSM231944 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231944/GSM231944.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231944-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Soft Tissue of arm - 388980 + + GSM231945 + RNA + 1 + + Soft Tissue of arm + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 2b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3 +Retreatment Grade: 3 +Primary Site: Soft Tissue of arm +Histology: Pleomorphic sarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231945/GSM231945.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231945-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Small intestine - 403725 + + GSM231946 + RNA + 1 + + Small intestine + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical Stage: Unknown +Clinical Symptoms: A +Primary Site: Small intestine +Histology: Malignant lymphoma, large B-cell, diffuse, immunoblastic, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231946/GSM231946.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231946-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 403728 + + GSM231947 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal mass +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231947/GSM231947.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231947-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Cervical lymph node - 403729 + + GSM231948 + RNA + 1 + + Cervical lymph node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 1 +Retreatment M: X +Retreatment Stage: Unknown +Retreatment Grade: X +Primary Site: Oral cavity +Histology: Metastatic Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231948/GSM231948.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231948-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Vulva - 403730 + + GSM231949 + RNA + 1 + + Vulva + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Pathological T: 2 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Primary Site: Vulva +Histology: Squamous cell carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231949/GSM231949.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231949-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 403732 + + GSM231950 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Presenting Symptoms: SOB +Presenting Symptoms: Weight Loss +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231950/GSM231950.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231950-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 403734 + + GSM231951 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 2c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 2 +Pathological Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231951/GSM231951.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231951-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Lung - 403738 + + GSM231952 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Hemoptysis +Presenting Symptoms: Persistent Cough +Workplace or household smokers?: Yes +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231952/GSM231952.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231952-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 403739 + + GSM231953 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231953/GSM231953.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231953-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 403740 + + GSM231954 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Clinical T: 2 +Clinical N: 0 +Clinical M: X +Clinical Stage: Unknown +Clinical Grade: 2 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231954/GSM231954.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231954-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404990 + + GSM231955 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 3 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231955/GSM231955.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231955-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404991 + + GSM231956 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: Yes +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231956/GSM231956.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231956-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 404992 + + GSM231957 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 50 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Clinical T: 3b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 4 +Clinical Gleason Score: 8-10 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231957/GSM231957.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231957-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404993 + + GSM231958 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 17 +Presenting Symptoms: Bright red stools +Presenting Symptoms: Constipation +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231958/GSM231958.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231958-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404994 + + GSM231959 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 15 +Presenting Symptoms: Abdominal Pain +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 1 +Pathological Metastatic Sites: Hepatic +Pathological Stage: 4 +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231959/GSM231959.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231959-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 404995 + + GSM231960 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Abdominal mass +Presenting Symptoms: Abdominal pain +Pathological T: 2b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 2 +Primary Site: Ovary +Histology: Endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231960/GSM231960.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231960-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404996 + + GSM231961 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 3 +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231961/GSM231961.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231961-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 404997 + + GSM231962 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231962/GSM231962.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231962-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 404998 + + GSM231963 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 90 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 1 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231963/GSM231963.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231963-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 404999 + + GSM231964 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Abdominal Pain +Diagnosis made by: Colonoscopy +Pathological T: 4 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 3 +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231964/GSM231964.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231964-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 405000 + + GSM231965 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Vaginal bleeding +Pathological T: 1a +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Primary Site: Ovary +Histology: Mixed epithelial tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231965/GSM231965.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231965-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 405001 + + GSM231966 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 72 +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231966/GSM231966.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231966-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 405002 + + GSM231967 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 42 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231967/GSM231967.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231967-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Thyroid - 405003 + + GSM231968 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 4a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 4A +Primary Site: Thyroid +Histology: Carcinoma, undifferentiated + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231968/GSM231968.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231968-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 405004 + + GSM231969 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Clinical T: 3a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231969/GSM231969.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231969-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Esophagus - 407830 + + GSM231970 + RNA + 1 + + Esophagus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 19 +Have you ever had esophagitis/reflux?: Yes +Pathological Question: T +Pathological Value: 2 +Pathological Question: N +Pathological Value: 1 +Pathological Question: M +Pathological Value: 0 +Pathological Question: Stage +Pathological Value: 2B +Pathological Question: Grade +Pathological Value: 4 +Primary Site: Esophagus +Pathological Question: Histology +Pathological Value: Signet ring cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231970/GSM231970.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231970-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 409599 + + GSM231971 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 61-65 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231971/GSM231971.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231971-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 409601 + + GSM231972 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231972/GSM231972.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231972-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Thyroid - 409602 + + GSM231973 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1 +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Multiple Tumours: Yes +Primary Site: Thyroid +Histology: Papillary carcinoma, follicular variant + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231973/GSM231973.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231973-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 409603 + + GSM231974 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Primary Site: Ovary +Histology: Serous Adenocarinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231974/GSM231974.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231974-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 409605 + + GSM231975 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: X +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231975/GSM231975.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231975-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 409606 + + GSM231976 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Pathological T: 1c +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231976/GSM231976.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231976-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 409608 + + GSM231977 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231977/GSM231977.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231977-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 409625 + + GSM231978 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +PSA: Elevated +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231978/GSM231978.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231978-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 409628 + + GSM231979 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 40-50 +Gender: Male +Ethnic Background: African-American +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 28 +Presenting Symptoms: Nocturia +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, Acinar Type + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231979/GSM231979.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231979-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 409630 + + GSM231980 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Primary Site: Ovary +Histology: Papillary serous tumor of low malignant potential + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231980/GSM231980.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231980-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Ovary - 415960 + + GSM231981 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 1 +Primary Site: Ovary +Histology: Endometrioid Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231981/GSM231981.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231981-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 415961 + + GSM231982 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 46 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231982/GSM231982.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231982-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 415963 + + GSM231983 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 21 +Pathological T: 1a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231983/GSM231983.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231983-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 415970 + + GSM231984 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: Yes +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231984/GSM231984.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231984-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Thyroid - 415971 + + GSM231985 + RNA + 1 + + Thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Primary Site: Thyroid +Histology: Papillary carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231985/GSM231985.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231985-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Kidney - 415976 + + GSM231986 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 32 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231986/GSM231986.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231986-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Rectum - 416801 + + GSM231987 + RNA + 1 + + Rectum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Chewing Tobacco +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 11 +Presenting Symptoms: Bright red stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Dukes Stage: C +Primary Site: Rectum +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231987/GSM231987.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231987-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Colon - 416802 + + GSM231988 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Black tarry stools +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231988/GSM231988.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231988-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Uterus - 416804 + + GSM231989 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 76 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Primary Site: Endometrium +Histology: Serous adenocarcinoma (papillary serous) + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231989/GSM231989.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231989-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Prostate - 416811 + + GSM231990 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +PSA: Elevated +Cancer discovered by digital exam?: No +Current status of disease: Under Therapy +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231990/GSM231990.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231990-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Soft tissue of thigh - 417511 + + GSM231991 + RNA + 1 + + Soft tissue of thigh + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 1b +Pathological N: X +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Primary Site: Soft tissue of thigh +Histology: Leiomyosarcoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231991/GSM231991.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231991-tbl-1.txt + + + + + + + 2007-09-27 + 2007-09-28 + 2007-09-28 + + +Breast - 421723 + + GSM231992 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 41-45 +Oral contraceptives?: No +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 26-30 +Pathological T: 2 +Pathological N: 0(i+) +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM231nnn/GSM231992/GSM231992.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM231992-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Prostate - 345962 + + GSM277677 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +PSA: Elevated +# of years PSA Tested?: 6-10 +Cancer discovered by digital exam?: Yes +Pathological T: 3a +Pathological N: 0 +Pathological M: X +Pathological Stage: Unknown +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277677/GSM277677.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277677-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Lung - 346006 + + GSM277678 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 35 +Presenting Symptoms: Hemoptysis +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277678/GSM277678.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277678-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Breast - 346007 + + GSM277679 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: American Indian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 27 +Mammogram: Yes +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: Yes +Fibrocystic disease?: No +Hormonal therapy (# of Years)?: 6-10 +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277679/GSM277679.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277679-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Colon - 362604 + + GSM277680 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 14 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: A +Primary Site: Colon +Histology: Mucinous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277680/GSM277680.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277680-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Breast - 366601 + + GSM277681 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 8 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 11-15 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: No +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 3 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: Yes +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277681/GSM277681.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277681-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Breast - 383892 + + GSM277682 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 39 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 11-15 +Oophorectomy?: Yes +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 3 +Pathological N: 3a +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277682/GSM277682.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277682-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Prostate - 383893 + + GSM277683 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: American Indian +Tobacco Use : Yes +Years of Tobacco Use: 11-15 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 39 +PSA: Elevated +# of years PSA Tested?: 0-5 +Cancer discovered by digital exam?: No +Pathological T: 3a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Gleason Score: 7 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277683/GSM277683.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277683-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Kidney - 383894 + + GSM277684 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 1 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Papillary renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277684/GSM277684.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277684-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Breast - 383895 + + GSM277685 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 22 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 0-5 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: Yes +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 1a +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 3 +Pathological ER: Negative +Pathological PR: Negative +Pathological HER/2 Neu: Positive +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277685/GSM277685.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277685-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Rectosigmoid Colon - 383898 + + GSM277686 + RNA + 1 + + Rectosigmoid Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Rectosigmoid +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277686/GSM277686.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277686-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Liver - 383899 + + GSM277687 + RNA + 1 + + Liver + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Hepatic +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Multiple Tumors: No +Retreatment Stage During or Following Multimodality Therapy: Yes +Retreatment Dukes Stage: D +Primary Site: Colon +Histology: Metastatic Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277687/GSM277687.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277687-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Breast - 383901 + + GSM277688 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 31 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 0-5 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Clinical T: 2 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2A +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical ER: Positive +Clinical PR: Positive +Clinical HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277688/GSM277688.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277688-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Colon - 383907 + + GSM277689 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 5 +Presenting Symptoms: Abdominal Pain +Presenting Symptoms: Vomiting +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277689/GSM277689.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277689-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Colon - 383910 + + GSM277690 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 90-100 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 16 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277690/GSM277690.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277690-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +breast - 383914 + + GSM277691 + RNA + 1 + + breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 40-50 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 26 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 6-10 +Oral contraceptives?: Yes +Number of years of use? (Oral contraceptives): 16-20 +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: Yes +Pathological T: 2 +Pathological N: 2a +Pathological M: 0 +Pathological Stage: 3A +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277691/GSM277691.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277691-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Omentum - 383917 + + GSM277692 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Metastatic Sites: Omentum +Clinical Stage: Unknown +Clinical Grade: 2 +Primary Site: Unknown Primary +Histology: Metastatic Carcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277692/GSM277692.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277692-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Breast - 383918 + + GSM277693 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Mammogram: Yes +Number of years in which a mammogram was obtained?: 16-20 +Oral contraceptives?: Yes +Oophorectomy?: No +Fibrocystic disease?: Yes +Hormonal therapy (# of Years)?: 11-15 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological ER: Positive +Pathological PR: Positive +Pathological HER/2 Neu: Negative +Primary Site: Breast +Histology: Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277693/GSM277693.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277693-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Prostate - 403711 + + GSM277694 + RNA + 1 + + Prostate + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +PSA: Elevated +Cancer discovered by digital exam?: No +Clinical T: 2a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 2 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Clinical Gleason Score: 5-6 +Primary Site: Prostate +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277694/GSM277694.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277694-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Lung - 405008 + + GSM277695 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Workplace or household smokers?: No +Pathological T: 1 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277695/GSM277695.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277695-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Lung - 416790 + + GSM277696 + RNA + 1 + + Lung + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 60 +Presenting Symptoms: Persistent Cough +Presenting Symptoms: SOB +Workplace or household smokers?: No +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1A +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Lung +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277696/GSM277696.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277696-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Omentum - 416792 + + GSM277697 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 28 +Prior Therapy: Radiation +Presenting Symptoms: Bloating +Presenting Symptoms: Vaginal bleeding +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277697/GSM277697.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277697-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Uterus - 416793 + + GSM277698 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 41 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277698/GSM277698.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277698-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Cecum - 416807 + + GSM277699 + RNA + 1 + + Cecum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 14 +Presenting Symptoms: Bright red stools +Pathological T: 4 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277699/GSM277699.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277699-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Kidney - 416808 + + GSM277700 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Type of Tobacco Use: Cigars +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 62 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277700/GSM277700.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277700-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Pancreas - 421716 + + GSM277701 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 49 +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 3 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Adenocarcinoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277701/GSM277701.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277701-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Pelvic Lymph Node - 421718 + + GSM277702 + RNA + 1 + + Pelvic Lymph Node + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Have you ever been diagnosed as having HPV on your PAP smear?: No +Clinical T: 1b1 +Clinical N: 1 +Clinical M: 0 +Clinical Stage: 3B +Clinical Grade: 2 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Cervix Uteri +Histology: Squamous cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277702/GSM277702.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277702-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Ovary - 421727 + + GSM277703 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3c +Pathological N: X +Pathological M: 1 +Pathological Metastatic Sites: Pleura +Pathological Stage: 4 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277703/GSM277703.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277703-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +thyroid - 421735 + + GSM277704 + RNA + 1 + + thyroid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 4a +Pathological N: 1b +Pathological M: 0 +Pathological Stage: 4A +Pathological Multiple Tumours: Yes +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Thyroid +Histology: Carcinoma, anaplastic + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277704/GSM277704.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277704-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +skin from abdomen - 421736 + + GSM277705 + RNA + 1 + + skin from abdomen + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Prior Therapy: Chemotherapy +Prior Therapy: Radiation +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 6-10 +Mammogram: Yes +Retreatment T: X +Retreatment N: X +Retreatment M: 1 +Retreatment Metastatic Sites: Skin +Retreatment Stage: 4 +Retreatment Grade: 2 +Retreatment Multiple Tumors: No +Retreatment Stage During or Following Multimodality Therapy: Yes +Retreatment ER: Positive +Retreatment PR: Positive +Retreatment HER/2 Neu: Negative +Primary Site: Breast +Histology: Metastatic Lobular Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277705/GSM277705.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277705-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Renal Pelvis - 421739 + + GSM277706 + RNA + 1 + + Renal Pelvis + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 54 +Clinical T: 1 +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumours: No +Clinical Staged During or Following Multimodality Therapy: No +Primary Site: Renal Pelvis +Histology: Transitional cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277706/GSM277706.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277706-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Breast - 421742 + + GSM277707 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 7 +Mammogram: Yes +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: Yes +Mammogram calcifications?: No +Hormonal therapy (# of Years)?: 16-20 +Pathological T: 4b +Pathological N: 0(i-) +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Primary Site: Breast +Histology: Metaplastic squamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277707/GSM277707.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277707-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Rectosigmoid - 421744 + + GSM277708 + RNA + 1 + + Rectosigmoid + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 22 +Presenting Symptoms: Bright red stools +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: B +Primary Site: Colon +Histology: Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277708/GSM277708.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277708-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Ovary - 423081 + + GSM277709 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 0-5 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277709/GSM277709.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277709-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Uterus - 426410 + + GSM277710 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2a +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277710/GSM277710.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277710-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Cecum - 426411 + + GSM277711 + RNA + 1 + + Cecum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 19 +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Adenocarcinoma arising in a villous adenoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277711/GSM277711.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277711-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Kidney - 426412 + + GSM277712 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 30 +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277712/GSM277712.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277712-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Ovary - 426414 + + GSM277713 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Chemotherapy +Presenting Symptoms: Abdominal pain +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: Yes +Primary Site: Ovary +Histology: Mixed Adenocarcinoma, Endometrioid and Clear Cell Types + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277713/GSM277713.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277713-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Ovary - 426417 + + GSM277714 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 16-20 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 20 +Prior Therapy: Chemotherapy +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: X +Retreatment N: 2 +Retreatment M: 1 +Retreatment Metastatic Sites: Other +Retreatment Stage: 4 +Retreatment Grade: X +Retreatment Stage During or Following Multimodality Therapy: Yes +Retreatment Dukes Stage: C +Primary Site: Colon +Histology: Metastatic Mucinous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277714/GSM277714.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277714-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Ovary - 426418 + + GSM277715 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 30-40 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 21-25 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3b +Retreatment N: 0 +Retreatment M: 0 +Retreatment Stage: 3B +Retreatment Grade: 3 +Retreatment Staged During or Following Multimodality Therapy: Yes +Primary Site: Cervix Uteri +Histology: Adenosquamous carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277715/GSM277715.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277715-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Uterus - 426419 + + GSM277716 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 20 +Pathological T: 1b +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Mixed clear cell and endometrioid adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277716/GSM277716.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277716-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Kidney - 426420 + + GSM277717 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 16 +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Chromophobe renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277717/GSM277717.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277717-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Kidney - 426429 + + GSM277718 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Type of Tobacco Use: Pipe +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 23 +Clinical T: 1a +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Conventional (clear cell) renal carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277718/GSM277718.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277718-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Uterus - 426431 + + GSM277719 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 80-90 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 41-45 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 48 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277719/GSM277719.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277719-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Common Bile Duct - 432618 + + GSM277720 + RNA + 1 + + Common Bile Duct + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 36-40 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical Question: T +Clinical Value: 3 +Clinical Question: N +Clinical Value: 0 +Clinical Question: M +Clinical Value: 0 +Clinical Question: Stage +Clinical Value: 2a +Clinical Question: Grade +Clinical Value: 2 +Clinical Question: Multiple Tumors +Clinical Value: No +Clinical Question: Stage During or Following Multimodality Therapy +Clinical Value: No +Clinical Question: Symptoms +Clinical Value: Jaundice +Primary Site: Common Bile Duct +Clinical Question: Histology +Clinical Value: Cholangiocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277720/GSM277720.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277720-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Uterus - 433390 + + GSM277721 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 45 +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277721/GSM277721.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277721-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Omentum - 433392 + + GSM277722 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.1 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Presenting Symptoms: Abdominal pain +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: X +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Malignant mixed muellerian tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277722/GSM277722.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277722-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Kidney - 433393 + + GSM277723 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1 +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Renal mixed papillary sarcomatoid + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277723/GSM277723.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277723-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Uterus - 433394 + + GSM277724 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277724/GSM277724.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277724-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Uterus - 433399 + + GSM277725 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.3 +Patient Age: 60-70 +Gender: Female +Tobacco Use : Yes +Years of Tobacco Use: 31-35 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 60 +Pathological T: 1c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Clear cell adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277725/GSM277725.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277725-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Pancreas - 433405 + + GSM277726 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.6 +Patient Age: 40-50 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 6-10 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Colloid Adenocarcinoma w/Intraductal Papillary Mucinous Tumor + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277726/GSM277726.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277726-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Uterus - 433408 + + GSM277727 + RNA + 1 + + Uterus + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Pathological T: 1b +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 1B +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Endometrium +Histology: Endometrioid carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277727/GSM277727.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277727-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Colon - 438159 + + GSM277728 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.9 +Patient Age: 40-50 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Days from Patient Diagnosis to Excision: 13 +Screening studies performed?: Yes +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 2 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: C +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277728/GSM277728.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277728-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Inguinal Lymph Nodes - 438165 + + GSM277729 + RNA + 1 + + Inguinal Lymph Nodes + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.8 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 56-60 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Prior Therapy: Surgical +Relapse Since Primary Treatment: Yes +Number of Years Until Relapse: 0-5 +Retreatment T: 3b +Retreatment N: 3 +Retreatment M: 0 +Retreatment Stage: 3C +Retreatment Multiple Tumors: No +Retreatment Stage During or Following Multimodality Therapy: Yes +Primary Site: Melanoma of Skin +Histology: Metastatic Malignant melanoma, NOS + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277729/GSM277729.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277729-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Stomach - 438174 + + GSM277730 + RNA + 1 + + Stomach + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.0 +Patient Age: 70-80 +Gender: Female +Ethnic Background: African-American +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 58 +Have you ever had esophagitis/reflux?: Yes +Pathological T: 3 +Pathological N: 3 +Pathological M: 0 +Pathological Stage: 4 +Pathological Grade: 4 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Stomach +Histology: Signet Ring Cell Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277730/GSM277730.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277730-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Colon - 440432 + + GSM277731 + RNA + 1 + + Colon + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.0 +Patient Age: 80-90 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bright red stools +Screening studies performed?: No +Diagnosis made by: Colonoscopy +Pathological T: 3 +Pathological N: 1 +Pathological M: 1 +Pathological Metastatic Sites: Other +Pathological Stage: 4 +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Pathological Dukes Stage: D +Primary Site: Colon +Histology: Mucinous Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277731/GSM277731.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277731-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +ovary - 440433 + + GSM277732 + RNA + 1 + + ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: Yes +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Adenocarcinoma, endometrioid and papillary serous + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277732/GSM277732.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277732-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Ovary - 440438 + + GSM277733 + RNA + 1 + + Ovary + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: Yes +Family History of Cancer?: Yes +Days from Patient Diagnosis to Excision: 21 +Presenting Symptoms: Abdominal pain +Presenting Symptoms: Bloating +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277733/GSM277733.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277733-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Breast - 440439 + + GSM277734 + RNA + 1 + + Breast + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.7 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Mammogram: Yes +Number of years in which a mammogram was obtained?: 26-30 +Oral contraceptives?: No +Oophorectomy?: No +Fibrocystic disease?: No +Mammogram calcifications?: No +Pathological T: 2 +Pathological N: 0 +Pathological M: 0 +Pathological Stage: 2A +Pathological Grade: 2 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Breast +Histology: Invasive Ductal Carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277734/GSM277734.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277734-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Kidney - 440442 + + GSM277735 + RNA + 1 + + Kidney + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 2.1 +Patient Age: 50-60 +Gender: Male +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Clinical T: 1b +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 1 +Clinical Grade: 2 +Clinical Multiple Tumors: Yes +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Kidney +Histology: Renal cell carcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277735/GSM277735.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277735-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Pancreas - 443468 + + GSM277736 + RNA + 1 + + Pancreas + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.2 +Patient Age: 50-60 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 26-30 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: Yes +Family History of Cancer?: No +Pathological T: 3 +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 2B +Pathological Grade: 1 +Pathological Multiple Tumours: No +Pathological Staged During or Following Multimodality Therapy: No +Primary Site: Exocrine Pancreas +Histology: Mucinous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277736/GSM277736.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277736-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Omentum - 443471 + + GSM277737 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.5 +Patient Age: 60-70 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : No +Alcohol Consumption?: No +Family History of Cancer?: No +Presenting Symptoms: Bloating +Pathological T: 3c +Pathological N: 1 +Pathological M: 0 +Pathological Stage: 3C +Pathological Grade: 3 +Pathological Multiple Tumors: No +Pathological Stage During or Following Multimodality Therapy: No +Primary Site: Ovary +Histology: Papillary Serous Adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277737/GSM277737.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277737-tbl-1.txt + + + + + + + 2008-03-27 + 2008-03-28 + 2008-03-28 + + +Omentum - 443473 + + GSM277738 + RNA + 1 + + Omentum + Homo sapiens + +none + total RNA + + +Quality metric = 28S to 18S: 1.4 +Patient Age: 70-80 +Gender: Female +Ethnic Background: Caucasian +Tobacco Use : Yes +Years of Tobacco Use: 46-50 +Type of Tobacco Use: Cigarettes +Alcohol Consumption?: No +Family History of Cancer?: Yes +Clinical T: 3c +Clinical N: 0 +Clinical M: 0 +Clinical Stage: 3C +Clinical Grade: 3 +Clinical Multiple Tumors: No +Clinical Stage During or Following Multimodality Therapy: No +Primary Site: Fallopian Tube +Histology: Papillary serous adenocarcinoma + + + + + + +ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM277nnn/GSM277738/GSM277738.CEL.gz + + + + ID_REF + The name of the probe set, blank for control probes + + + VALUE + The signal value calculated by MAS5, normalized + + + ABS_CALL + The detection value calculated by the MAS5 + + + DETECTION P-VALUE + The detection p-value calculated by the MAS5 + + +GSM277738-tbl-1.txt + + + + + + + 2004-12-23 + 2005-01-15 + 2008-03-27 + + +Expression Project for Oncology (expO) + + GSE2109 + https://expo.intgen.org/geo/ + +The mission of expO is to build on the technologies and outcomes of the Human Genome Project to accelerate improved clinical management of cancer patients. + +IGC's Expression Project for Oncology (expO) seeks to integrate longitudinal clinical annotation with gene expression data for a unique and powerful portrait of human malignancies, providing critical perspective on diagnostic markers, prognostic indicators, and therapeutic targets. + +The goal of expO and its consortium supporters is to procure tissue samples under standard conditions and perform gene expression analyses on a clinically annotated set of deidentified tumor samples. The tumor data is updated with clinical outcomes and is released into the public domain without intellectual property restriction. + +Series-matrices are available at ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/SeriesMatrix/GSE2109/. + +For more information, see http://www.intgen.org/ + + + + cancer portraits + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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