Index: /GSEXmlParser/GSEXmlParser.cpp
===================================================================
--- /GSEXmlParser/GSEXmlParser.cpp	(revision 26)
+++ /GSEXmlParser/GSEXmlParser.cpp	(revision 26)
@@ -0,0 +1,127 @@
+#include "GSEXmlParser.h"
+
+void   Data::Dump()
+{
+    LOG("Sample iid: " << iid);
+    LOG("Source: " << source);
+    LOG("Supplementary-Data Type: " << supp_type);
+    LOG("Supplementary-Data: " << supp_data);
+    LOG("\n-------- Description --------");
+    for(int i = 0; i < desc.GetCount(); i++)
+        LOG("   " << desc.GetKey(i) << " ..... " << desc[i]);
+    LOG("-------- Description --------\n");
+}
+
+String   Data::ToXML()
+{
+    String descs; //descriptions
+    for(int i = 0; i < desc.GetCount(); i++)
+        descs << XmlTag("Description")("name", desc.GetKey(i)).Text(desc[i]);
+
+    return XmlTag("Sample")("iid", iid)(
+                     XmlTag("Source").Text(source) + 
+                     XmlTag("Supplementary-Data")("type", supp_type).Text(supp_data) +
+                     XmlTag("Descriptions") (descs) 
+                 );
+}
+
+void   GSEParser::Dump()
+{
+	LOG("\n======== GSE XML ========\n");
+	for (int i=0; i < data.GetCount(); i++) {
+		data[i].Dump();
+	}
+}
+
+void GSEParser::LoadXML(String filename) {
+	//Load XML File
+    //LOG("\n---- GSE 2109 XML ----");
+    String gse;
+    gse = LoadFile(GetDataFile(filename));
+    XmlNode rnode = ParseXML(gse);
+    
+    //Clear Data Array
+    data.Clear();
+    
+    //Get Root Node    
+    const XmlNode &xnode = rnode["MINiML"];
+    
+    //Save Data Array, one by one
+    Vector<String> lines, des;
+    String str, lstr, rstr;
+    for (int i=0; i<xnode.GetCount(); i++) {
+       if (xnode[i].GetTag()=="Sample") {  
+          //LOG("Sample(iid):" << xnode[i].Attr("iid"));
+          //LOG("Source:" << xnode[i]["Channel"]["Source"].GatherText());
+          //LOG("\n-------- Description --------");
+          Data d;
+          d.iid = xnode[i].Attr("iid");
+          d.source = xnode[i]["Channel"]["Source"].GatherText();
+          d.supp_type = xnode[i]["Supplementary-Data"].Attr("type");
+          d.supp_data = xnode[i]["Supplementary-Data"].GatherText();
+          lines = Split(xnode[i]["Description"].GatherText(),'\n');
+          for (int j=0; j<lines.GetCount(); j++) {
+              if (lines[j].Find("=") > -1) {
+                  des = Split(lines[j], '=');
+              } else if (lines[j].Find(":") > -1) {
+                  des = Split(lines[j], ':');
+              }
+              if (des.GetCount()>1) {
+                  lstr = TrimSpace(des[0]);
+                  rstr = TrimSpace(des[1]);                  
+                  //LOG(lstr << ":" << rstr);
+                  String& v = d.desc.GetAdd(lstr);
+                  v = rstr;
+              }
+          }
+          data.Add(d);
+          //LOG("-------- Description --------\n");
+       }
+    }
+    //    
+}
+
+String   GSEParser::ToXML()
+{
+	String datas; // Datas
+    for (int i = 0; i < data.GetCount(); i++) {
+        datas << data[i].ToXML();
+    }
+    return XmlHeader() + XmlTag("GSEFAMILY")(datas);
+}
+
+String TrimSpace(String str) {
+	while (str.StartsWith(" ") && str.GetLength()) {
+		str = str.Mid(1);
+	}
+	while (str.EndsWith(" ") && str.GetLength()) {
+		str = str.Left(str.GetLength()-1);
+	}
+	return str;
+}
+
+CONSOLE_APP_MAIN
+{
+	String in, out, arg_flag;
+	in = "GSE2109_family.xml";
+	out = "GSEFamily.xml";
+	
+	const Vector<String>& cmdline = CommandLine();
+	for(int i = 0; i < cmdline.GetCount(); i++) {
+		if (cmdline[i].StartsWith("-")){
+			arg_flag = cmdline[i];			
+		} else if (arg_flag.IsEqual("-i")) {
+			in = cmdline[i];
+			//Cout() << "in: " << in << "\n";
+		} else if (arg_flag.IsEqual("-o")) {
+			out = cmdline[i];
+			//Cout() << "out: " << out << "\n";
+		}
+	}
+	
+	GSEParser parser;
+	parser.LoadXML(in);
+	SaveFile(out,parser.ToXML());
+	
+}
+
Index: /GSEXmlParser/GSEXmlParser.h
===================================================================
--- /GSEXmlParser/GSEXmlParser.h	(revision 26)
+++ /GSEXmlParser/GSEXmlParser.h	(revision 26)
@@ -0,0 +1,28 @@
+#ifndef _GSEXmlParser_GSEXmlParser_h
+#define _GSEXmlParser_GSEXmlParser_h
+
+#include <Core/Core.h>
+#include <stdio.h>
+
+using namespace Upp;
+using namespace std;
+
+String TrimSpace(String str);
+
+struct Data {
+    String                    iid;
+    String                    source;
+    VectorMap<String, String> desc; //Description
+    String                    supp_type; //Supplementary-Data Type
+    String                    supp_data; //Supplementary-Data
+    void   Dump();
+    String   ToXML();	    
+};
+
+struct   GSEParser {
+	Array<Data>           data;
+	void     Dump();
+    String   ToXML();
+    void     LoadXML(String filename);	
+};
+#endif
Index: /GSEXmlParser/GSEXmlParser.upp
===================================================================
--- /GSEXmlParser/GSEXmlParser.upp	(revision 26)
+++ /GSEXmlParser/GSEXmlParser.upp	(revision 26)
@@ -0,0 +1,10 @@
+uses
+	Core;
+
+file
+	GSEXmlParser.h,
+	GSEXmlParser.cpp;
+
+mainconfig
+	"" = "";
+