| 1 | -------------------------------------------------------------------------------- |
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| 2 | Command: ./velveth output 17 -fasta -short data/test_long.fa |
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| 3 | Massif arguments: (none) |
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| 4 | ms_print arguments: massif.out.10571 |
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| 5 | -------------------------------------------------------------------------------- |
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| 6 | |
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| 7 | |
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| 8 | MB |
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| 9 | 66.60^ @@@@@@@@@@# |
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| 10 | | :@:::::::::@:::::::::::::::::::::::::::::::::::::::::@ # |
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| 11 | | :@:::: ::::@ : : : @ # |
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| 12 | | :@:::: ::::@ : : : @ # |
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| 13 | | :@:::: ::::@ : : : @ # |
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| 14 | | :@:::: ::::@ : : : @ # |
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| 15 | | :@:::: ::::@ : : : @ # |
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| 16 | | :@:::: ::::@ : : : @ # |
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| 17 | | :@:::: ::::@ : : : @ # |
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| 18 | | :@:::: ::::@ : : : @ # |
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| 19 | | :@:::: ::::@ : : : @ # |
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| 20 | | :@:::: ::::@ : : : @ # |
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| 21 | | :@:::: ::::@ : : : @ # |
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| 22 | | :@:::: ::::@ : : : @ # |
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| 23 | | :@:::: ::::@ : : : @ # |
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| 24 | | :@:::: ::::@ : : : @ # |
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| 25 | | :@:::: ::::@ : : : @ # |
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| 26 | | :@:::: ::::@ : : : @ # |
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| 27 | | :@:::: ::::@ : : : @ # |
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| 28 | | :@:::: ::::@ : : : @ # |
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| 29 | 0 +----------------------------------------------------------------------->Mi |
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| 30 | 0 120.8 |
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| 31 | |
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| 32 | Number of snapshots: 71 |
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| 33 | Detailed snapshots: [2, 4, 57, 67, 68 (peak)] |
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| 34 | |
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| 35 | -------------------------------------------------------------------------------- |
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| 36 | n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B) |
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| 37 | -------------------------------------------------------------------------------- |
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| 38 | 0 0 0 0 0 0 |
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| 39 | 1 201,656 34,224 34,099 125 0 |
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| 40 | 2 14,964,257 33,864 33,747 117 0 |
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| 41 | 99.65% (33,747B) (heap allocation functions) malloc/new/new[], --alloc-fns, etc. |
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| 42 | ->96.83% (32,792B) 0x40E2F27: __alloc_dir (opendir.c:186) |
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| 43 | | ->96.83% (32,792B) 0x40E3048: opendir (opendir.c:141) |
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| 44 | | ->96.83% (32,792B) 0x804A33A: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 45 | | |
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| 46 | ->01.78% (603B) in 5 places, all below massif's threshold (01.00%) |
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| 47 | | |
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| 48 | ->01.04% (352B) 0x40AC00D: __fopen_internal (iofopen.c:76) |
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| 49 | ->01.04% (352B) 0x40AC0DA: fopen@@GLIBC_2.1 (iofopen.c:107) |
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| 50 | ->01.04% (352B) 0x8052839: parseDataAndReadFiles (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 51 | | ->01.04% (352B) 0x804A68A: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 52 | | |
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| 53 | ->00.00% (0B) in 1+ places, all below ms_print's threshold (01.00%) |
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| 54 | |
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| 55 | -------------------------------------------------------------------------------- |
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| 56 | n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B) |
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| 57 | -------------------------------------------------------------------------------- |
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| 58 | 3 14,972,543 67,142,792 67,142,659 133 0 |
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| 59 | 4 17,159,083 67,142,792 67,142,659 133 0 |
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| 60 | 100.00% (67,142,659B) (heap allocation functions) malloc/new/new[], --alloc-fns, etc. |
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| 61 | ->99.95% (67,108,904B) 0x8053302: callocOrExit3 (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 62 | | ->99.95% (67,108,864B) 0x804BD0D: newSplayTable (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 63 | | | ->99.95% (67,108,864B) 0x804A56F: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 64 | | | |
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| 65 | | ->00.00% (40B) in 1+ places, all below ms_print's threshold (01.00%) |
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| 66 | | |
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| 67 | ->00.05% (33,755B) in 1+ places, all below ms_print's threshold (01.00%) |
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| 68 | |
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| 69 | -------------------------------------------------------------------------------- |
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| 70 | n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B) |
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| 71 | -------------------------------------------------------------------------------- |
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| 72 | 5 17,530,320 67,168,712 67,166,982 1,730 0 |
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| 73 | 6 17,787,233 67,179,800 67,177,069 2,731 0 |
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| 74 | 7 18,197,341 67,197,512 67,193,182 4,330 0 |
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| 75 | 8 18,557,236 67,213,064 67,207,330 5,734 0 |
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| 76 | 9 19,017,548 67,232,936 67,225,408 7,528 0 |
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| 77 | 10 19,337,637 67,246,760 67,237,984 8,776 0 |
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| 78 | 11 19,737,808 67,264,040 67,253,704 10,336 0 |
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| 79 | 12 20,137,682 67,281,320 67,269,424 11,896 0 |
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| 80 | 13 20,437,803 67,294,280 67,281,214 13,066 0 |
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| 81 | 14 20,761,645 67,308,104 67,293,949 14,155 0 |
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| 82 | 15 21,227,550 67,327,976 67,312,303 15,673 0 |
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| 83 | 16 21,592,495 67,343,528 67,326,667 16,861 0 |
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| 84 | 17 21,835,594 67,353,896 67,336,243 17,653 0 |
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| 85 | 18 22,200,544 67,369,448 67,350,607 18,841 0 |
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| 86 | 19 22,707,227 67,391,048 67,370,557 20,491 0 |
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| 87 | 20 23,071,884 67,406,600 67,384,921 21,679 0 |
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| 88 | 21 23,538,192 67,426,472 67,403,275 23,197 0 |
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| 89 | 22 23,870,893 67,440,368 67,416,090 24,278 0 |
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| 90 | 23 28,041,902 67,440,368 67,416,090 24,278 0 |
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| 91 | 24 28,241,889 67,505,784 67,481,549 24,235 0 |
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| 92 | 25 28,761,639 67,484,192 67,462,081 22,111 0 |
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| 93 | 26 29,094,279 67,470,368 67,449,505 20,863 0 |
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| 94 | 27 29,281,389 67,462,592 67,442,431 20,161 0 |
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| 95 | 28 29,614,029 67,448,768 67,429,855 18,913 0 |
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| 96 | 29 29,801,139 67,440,992 67,422,781 18,211 0 |
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| 97 | 30 30,133,779 67,427,168 67,410,205 16,963 0 |
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| 98 | 31 30,320,889 67,419,392 67,403,131 16,261 0 |
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| 99 | 32 30,653,529 67,405,568 67,390,555 15,013 0 |
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| 100 | 33 30,840,639 67,397,792 67,383,481 14,311 0 |
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| 101 | 34 31,173,279 67,383,968 67,370,905 13,063 0 |
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| 102 | 35 31,360,389 67,376,192 67,363,831 12,361 0 |
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| 103 | 36 31,693,029 67,362,368 67,351,244 11,124 0 |
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| 104 | 37 31,880,139 67,354,592 67,344,062 10,530 0 |
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| 105 | 38 32,212,779 67,340,768 67,331,294 9,474 0 |
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| 106 | 39 32,399,889 67,332,992 67,324,112 8,880 0 |
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| 107 | 40 32,732,529 67,319,168 67,311,344 7,824 0 |
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| 108 | 41 32,919,639 67,311,392 67,304,162 7,230 0 |
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| 109 | 42 33,252,279 67,297,568 67,291,394 6,174 0 |
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| 110 | 43 33,439,389 67,289,792 67,284,212 5,580 0 |
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| 111 | 44 33,772,029 67,275,968 67,271,444 4,524 0 |
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| 112 | 45 33,959,139 67,268,192 67,264,262 3,930 0 |
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| 113 | 46 34,291,779 67,254,368 67,251,494 2,874 0 |
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| 114 | 47 34,478,889 67,246,592 67,244,312 2,280 0 |
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| 115 | 48 34,811,529 67,232,768 67,231,544 1,224 0 |
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| 116 | 49 34,998,639 67,224,992 67,224,362 630 0 |
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| 117 | 50 35,009,034 67,224,560 67,223,963 597 0 |
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| 118 | 51 35,019,429 67,224,128 67,223,564 564 0 |
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| 119 | 52 35,029,824 67,223,696 67,223,165 531 0 |
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| 120 | 53 35,040,219 67,223,264 67,222,766 498 0 |
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| 121 | 54 35,050,614 67,222,832 67,222,367 465 0 |
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| 122 | 55 35,061,009 67,222,400 67,221,968 432 0 |
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| 123 | 56 35,071,404 67,221,968 67,221,569 399 0 |
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| 124 | 57 35,081,799 67,221,536 67,221,170 366 0 |
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| 125 | 100.00% (67,221,170B) (heap allocation functions) malloc/new/new[], --alloc-fns, etc. |
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| 126 | ->99.92% (67,169,154B) 0x8053302: callocOrExit3 (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 127 | | ->99.83% (67,108,864B) 0x804BD0D: newSplayTable (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 128 | | | ->99.83% (67,108,864B) 0x804A56F: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 129 | | | |
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| 130 | | ->00.09% (60,290B) in 1+ places, all below ms_print's threshold (01.00%) |
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| 131 | | |
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| 132 | ->00.08% (52,016B) in 1+ places, all below ms_print's threshold (01.00%) |
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| 133 | |
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| 134 | -------------------------------------------------------------------------------- |
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| 135 | n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B) |
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| 136 | -------------------------------------------------------------------------------- |
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| 137 | 58 35,092,194 67,221,104 67,220,771 333 0 |
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| 138 | 59 35,102,589 67,220,672 67,220,372 300 0 |
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| 139 | 60 35,112,984 67,220,240 67,219,973 267 0 |
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| 140 | 61 35,123,379 67,219,808 67,219,574 234 0 |
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| 141 | 62 35,133,774 67,219,376 67,219,175 201 0 |
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| 142 | 63 35,151,119 67,212,176 67,211,965 211 0 |
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| 143 | 64 45,076,553 68,260,752 68,260,517 235 0 |
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| 144 | 65 59,040,855 68,785,040 68,784,793 247 0 |
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| 145 | 66 76,547,560 69,309,328 69,309,069 259 0 |
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| 146 | 67 108,199,950 69,833,616 69,833,345 271 0 |
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| 147 | 100.00% (69,833,345B) (heap allocation functions) malloc/new/new[], --alloc-fns, etc. |
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| 148 | ->96.17% (67,161,154B) 0x8053302: callocOrExit3 (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 149 | | ->96.10% (67,108,864B) 0x804BD0D: newSplayTable (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 150 | | | ->96.10% (67,108,864B) 0x804A56F: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 151 | | | |
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| 152 | | ->00.07% (52,290B) in 1+ places, all below ms_print's threshold (01.00%) |
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| 153 | | |
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| 154 | ->03.75% (2,621,380B) 0x804A88D: allocatePointer (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 155 | | ->03.75% (2,621,380B) 0x804AF21: findOrInsertOccurenceInSplayTree (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 156 | | ->02.25% (1,572,828B) 0x804C572: printAnnotations (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 157 | | | ->02.25% (1,572,828B) 0x804CE67: inputSequenceArrayIntoSplayTableAndArchive (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 158 | | | ->02.25% (1,572,828B) 0x804A5ED: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 159 | | | |
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| 160 | | ->01.50% (1,048,552B) 0x804C66B: printAnnotations (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 161 | | ->01.50% (1,048,552B) 0x804CE67: inputSequenceArrayIntoSplayTableAndArchive (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 162 | | ->01.50% (1,048,552B) 0x804A5ED: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 163 | | |
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| 164 | ->00.07% (50,811B) in 1+ places, all below ms_print's threshold (01.00%) |
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| 165 | |
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| 166 | -------------------------------------------------------------------------------- |
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| 167 | n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B) |
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| 168 | -------------------------------------------------------------------------------- |
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| 169 | 68 126,669,294 69,833,616 69,833,345 271 0 |
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| 170 | 100.00% (69,833,345B) (heap allocation functions) malloc/new/new[], --alloc-fns, etc. |
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| 171 | ->96.17% (67,161,154B) 0x8053302: callocOrExit3 (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 172 | | ->96.10% (67,108,864B) 0x804BD0D: newSplayTable (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 173 | | | ->96.10% (67,108,864B) 0x804A56F: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 174 | | | |
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| 175 | | ->00.07% (52,290B) in 1+ places, all below ms_print's threshold (01.00%) |
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| 176 | | |
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| 177 | ->03.75% (2,621,380B) 0x804A88D: allocatePointer (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 178 | | ->03.75% (2,621,380B) 0x804AF21: findOrInsertOccurenceInSplayTree (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 179 | | ->02.25% (1,572,828B) 0x804C572: printAnnotations (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 180 | | | ->02.25% (1,572,828B) 0x804CE67: inputSequenceArrayIntoSplayTableAndArchive (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 181 | | | ->02.25% (1,572,828B) 0x804A5ED: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 182 | | | |
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| 183 | | ->01.50% (1,048,552B) 0x804C66B: printAnnotations (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 184 | | ->01.50% (1,048,552B) 0x804CE67: inputSequenceArrayIntoSplayTableAndArchive (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 185 | | ->01.50% (1,048,552B) 0x804A5ED: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth) |
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| 186 | | |
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| 187 | ->00.07% (50,811B) in 1+ places, all below ms_print's threshold (01.00%) |
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| 188 | |
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| 189 | -------------------------------------------------------------------------------- |
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| 190 | n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B) |
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| 191 | -------------------------------------------------------------------------------- |
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| 192 | 69 126,680,439 69,024 68,885 139 0 |
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| 193 | 70 126,688,877 68,640 68,553 87 0 |
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