jazz/11-05-04: velveth_callgrind.log

File velveth_callgrind.log, 5.5 KB (added by jazz, 13 years ago)
Line 
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2Profile data file 'callgrind.out.12046' (creator: callgrind-3.6.0.SVN-Debian)
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4I1 cache:
5D1 cache:
6L2 cache:
7Timerange: Basic block 0 - 44925812
8Trigger: Program termination
9Profiled target:  ./velveth output 17 -fasta -short data/test_long.fa (PID 12046, part 1)
10Events recorded:  Ir
11Events shown:     Ir
12Event sort order: Ir
13Thresholds:       99
14Include dirs:     
15User annotated:   
16Auto-annotation:  off
17
18--------------------------------------------------------------------------------
19         Ir
20--------------------------------------------------------------------------------
21237,911,184  PROGRAM TOTALS
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23--------------------------------------------------------------------------------
24        Ir  file:function
25--------------------------------------------------------------------------------
2684,679,659  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/gmon/mcount.c:__mcount_internal [/lib/i686/cmov/libc-2.11.2.so]
2718,961,700  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/gmon/../sysdeps/i386/i386-mcount.S:mcount [/lib/i686/cmov/libc-2.11.2.so]
2818,648,000  ???:findOrInsertOccurenceInSplayTable [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
2916,185,780  ???:printAnnotations [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
3012,529,193  ???:compareKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
3111,150,000  ???:getNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
32 8,636,439  ???:findOrInsertOccurenceInSplayTree [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
33 7,400,000  ???:reversePushNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
34 6,900,031  ???:newTightStringArrayFromStringArray [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
35 6,593,889  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/vfprintf.c:vfprintf [/lib/i686/cmov/libc-2.11.2.so]
36 6,000,000  ???:pushNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
37 5,160,006  ???:readFastAFile [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
38 4,221,964  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/multiarch/strcspn.S:0x00016aaf [/lib/i686/cmov/libc-2.11.2.so]
39 3,648,000  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/strncpy.c:strncpy [/lib/i686/cmov/libc-2.11.2.so]
40 3,371,894  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/memchr.S:memchr [/lib/i686/cmov/libc-2.11.2.so]
41 2,979,235  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/vfscanf.c:_IO_vfscanf [/lib/i686/cmov/libc-2.11.2.so]
42 2,380,000  ???:getLength [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
43 1,953,870  ???:allocatePointer [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
44 1,783,429  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/fileops.c:_IO_file_xsputn@@GLIBC_2.1 [/lib/i686/cmov/libc-2.11.2.so]
45 1,657,066  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/genops.c:_IO_default_xsputn [/lib/i686/cmov/libc-2.11.2.so]
46 1,571,639  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iogetline.c:_IO_getline_info [/lib/i686/cmov/libc-2.11.2.so]
47 1,560,240  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iofgets.c:fgets [/lib/i686/cmov/libc-2.11.2.so]
48 1,034,308  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/strchrnul.S:strchrnul [/lib/i686/cmov/libc-2.11.2.so]
49   895,510  ???:copyKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
50   845,725  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/memcpy.S:memcpy [/lib/i686/cmov/libc-2.11.2.so]
51   593,636  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/multiarch/strlen.S:__strlen_sse2 [/lib/i686/cmov/libc-2.11.2.so]
52   528,088  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iogetline.c:_IO_getline [/lib/i686/cmov/libc-2.11.2.so]
53   484,800  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/_itoa.c:_itoa_word [/lib/i686/cmov/libc-2.11.2.so]
54   449,834  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/_itoa.c:_itoa [/lib/i686/cmov/libc-2.11.2.so]
55   422,115  ???:importReadSet [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth]
56   378,049  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i486/strcat.S:strcat [/lib/i686/cmov/libc-2.11.2.so]
57   360,060  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/libioP.h:fgets
58   297,074  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:_int_malloc [/lib/i686/cmov/libc-2.11.2.so]
59   267,778  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/strops.c:_IO_str_init_static_internal [/lib/i686/cmov/libc-2.11.2.so]
60   252,140  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/strtol_l.c:____strtol_l_internal [/lib/i686/cmov/libc-2.11.2.so]
61   230,274  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:_int_free [/lib/i686/cmov/libc-2.11.2.so]
62   210,063  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/genops.c:_IO_sputbackc [/lib/i686/cmov/libc-2.11.2.so]
63   205,065  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/rawmemchr.S:rawmemchr [/lib/i686/cmov/libc-2.11.2.so]
64   202,275  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/printf-parse.h:vfprintf
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