1 | -------------------------------------------------------------------------------- |
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2 | Profile data file 'callgrind.out.12046' (creator: callgrind-3.6.0.SVN-Debian) |
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3 | -------------------------------------------------------------------------------- |
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4 | I1 cache: |
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5 | D1 cache: |
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6 | L2 cache: |
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7 | Timerange: Basic block 0 - 44925812 |
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8 | Trigger: Program termination |
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9 | Profiled target: ./velveth output 17 -fasta -short data/test_long.fa (PID 12046, part 1) |
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10 | Events recorded: Ir |
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11 | Events shown: Ir |
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12 | Event sort order: Ir |
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13 | Thresholds: 99 |
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14 | Include dirs: |
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15 | User annotated: |
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16 | Auto-annotation: off |
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17 | |
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18 | -------------------------------------------------------------------------------- |
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19 | Ir |
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20 | -------------------------------------------------------------------------------- |
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21 | 237,911,184 PROGRAM TOTALS |
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22 | |
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23 | -------------------------------------------------------------------------------- |
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24 | Ir file:function |
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25 | -------------------------------------------------------------------------------- |
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26 | 84,679,659 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/gmon/mcount.c:__mcount_internal [/lib/i686/cmov/libc-2.11.2.so] |
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27 | 18,961,700 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/gmon/../sysdeps/i386/i386-mcount.S:mcount [/lib/i686/cmov/libc-2.11.2.so] |
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28 | 18,648,000 ???:findOrInsertOccurenceInSplayTable [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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29 | 16,185,780 ???:printAnnotations [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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30 | 12,529,193 ???:compareKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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31 | 11,150,000 ???:getNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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32 | 8,636,439 ???:findOrInsertOccurenceInSplayTree [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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33 | 7,400,000 ???:reversePushNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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34 | 6,900,031 ???:newTightStringArrayFromStringArray [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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35 | 6,593,889 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/vfprintf.c:vfprintf [/lib/i686/cmov/libc-2.11.2.so] |
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36 | 6,000,000 ???:pushNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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37 | 5,160,006 ???:readFastAFile [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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38 | 4,221,964 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/multiarch/strcspn.S:0x00016aaf [/lib/i686/cmov/libc-2.11.2.so] |
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39 | 3,648,000 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/strncpy.c:strncpy [/lib/i686/cmov/libc-2.11.2.so] |
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40 | 3,371,894 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/memchr.S:memchr [/lib/i686/cmov/libc-2.11.2.so] |
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41 | 2,979,235 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/vfscanf.c:_IO_vfscanf [/lib/i686/cmov/libc-2.11.2.so] |
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42 | 2,380,000 ???:getLength [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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43 | 1,953,870 ???:allocatePointer [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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44 | 1,783,429 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/fileops.c:_IO_file_xsputn@@GLIBC_2.1 [/lib/i686/cmov/libc-2.11.2.so] |
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45 | 1,657,066 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/genops.c:_IO_default_xsputn [/lib/i686/cmov/libc-2.11.2.so] |
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46 | 1,571,639 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iogetline.c:_IO_getline_info [/lib/i686/cmov/libc-2.11.2.so] |
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47 | 1,560,240 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iofgets.c:fgets [/lib/i686/cmov/libc-2.11.2.so] |
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48 | 1,034,308 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/strchrnul.S:strchrnul [/lib/i686/cmov/libc-2.11.2.so] |
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49 | 895,510 ???:copyKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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50 | 845,725 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/memcpy.S:memcpy [/lib/i686/cmov/libc-2.11.2.so] |
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51 | 593,636 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/multiarch/strlen.S:__strlen_sse2 [/lib/i686/cmov/libc-2.11.2.so] |
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52 | 528,088 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iogetline.c:_IO_getline [/lib/i686/cmov/libc-2.11.2.so] |
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53 | 484,800 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/_itoa.c:_itoa_word [/lib/i686/cmov/libc-2.11.2.so] |
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54 | 449,834 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/_itoa.c:_itoa [/lib/i686/cmov/libc-2.11.2.so] |
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55 | 422,115 ???:importReadSet [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth] |
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56 | 378,049 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i486/strcat.S:strcat [/lib/i686/cmov/libc-2.11.2.so] |
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57 | 360,060 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/libioP.h:fgets |
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58 | 297,074 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:_int_malloc [/lib/i686/cmov/libc-2.11.2.so] |
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59 | 267,778 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/strops.c:_IO_str_init_static_internal [/lib/i686/cmov/libc-2.11.2.so] |
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60 | 252,140 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/strtol_l.c:____strtol_l_internal [/lib/i686/cmov/libc-2.11.2.so] |
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61 | 230,274 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:_int_free [/lib/i686/cmov/libc-2.11.2.so] |
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62 | 210,063 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/genops.c:_IO_sputbackc [/lib/i686/cmov/libc-2.11.2.so] |
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63 | 205,065 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/rawmemchr.S:rawmemchr [/lib/i686/cmov/libc-2.11.2.so] |
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64 | 202,275 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/printf-parse.h:vfprintf |
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65 | |
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