1 | -------------------------------------------------------------------------------- |
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2 | Profile data file 'callgrind.out.12074' (creator: callgrind-3.6.0.SVN-Debian) |
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3 | -------------------------------------------------------------------------------- |
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4 | I1 cache: |
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5 | D1 cache: |
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6 | L2 cache: |
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7 | Timerange: Basic block 0 - 255724005 |
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8 | Trigger: Program termination |
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9 | Profiled target: ./velvetg output/ -exp_cov 3 -min_contig_lgth 100 (PID 12074, part 1) |
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10 | Events recorded: Ir |
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11 | Events shown: Ir |
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12 | Event sort order: Ir |
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13 | Thresholds: 99 |
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14 | Include dirs: |
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15 | User annotated: |
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16 | Auto-annotation: off |
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17 | |
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18 | -------------------------------------------------------------------------------- |
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19 | Ir |
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20 | -------------------------------------------------------------------------------- |
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21 | 1,133,262,501 PROGRAM TOTALS |
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22 | |
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23 | -------------------------------------------------------------------------------- |
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24 | Ir file:function |
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25 | -------------------------------------------------------------------------------- |
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26 | 315,606,909 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/gmon/mcount.c:__mcount_internal [/lib/i686/cmov/libc-2.11.2.so] |
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27 | 154,132,672 ???:sortKmerOccurenceTable [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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28 | 82,051,170 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/gmon/../sysdeps/i386/i386-mcount.S:mcount [/lib/i686/cmov/libc-2.11.2.so] |
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29 | 70,073,902 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/msort.c:msort_with_tmp'2 [/lib/i686/cmov/libc-2.11.2.so] |
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30 | 65,347,261 ???:compareKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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31 | 64,518,474 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/vfprintf.c:vfprintf [/lib/i686/cmov/libc-2.11.2.so] |
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32 | 35,642,775 ???:importPreGraph [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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33 | 28,902,293 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/fileops.c:_IO_file_xsputn@@GLIBC_2.1 [/lib/i686/cmov/libc-2.11.2.so] |
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34 | 28,382,502 ???:findKmerInKmerOccurenceTable [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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35 | 21,318,610 ???:getNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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36 | 19,936,918 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/multiarch/strcspn.S:0x00016aaf [/lib/i686/cmov/libc-2.11.2.so] |
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37 | 19,162,980 ???:pushNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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38 | 16,785,494 ???:reversePushNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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39 | 14,856,700 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/getc.c:getc [/lib/i686/cmov/libc-2.11.2.so] |
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40 | 14,626,580 ???:getKmerKey [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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41 | 14,404,676 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/strchrnul.S:strchrnul [/lib/i686/cmov/libc-2.11.2.so] |
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42 | 10,411,954 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/vfscanf.c:_IO_vfscanf [/lib/i686/cmov/libc-2.11.2.so] |
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43 | 9,781,770 ???:compareKmerOccurences [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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44 | 9,503,620 ???:exportGraph [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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45 | 8,113,875 ???:addPreNodeToPreGraph_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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46 | 8,029,051 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/memcpy.S:memcpy [/lib/i686/cmov/libc-2.11.2.so] |
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47 | 6,900,031 ???:newTightStringArrayFromStringArray [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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48 | 6,318,945 ???:velvetFprintf [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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49 | 5,403,930 ???:writeNucleotideAtPosition [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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50 | 5,258,405 ???:readPreGraphFile [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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51 | 5,219,890 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/libioP.h:getc |
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52 | 4,921,640 ???:getNodeInGraph [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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53 | 4,829,141 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/msort.c:msort_with_tmp [/lib/i686/cmov/libc-2.11.2.so] |
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54 | 4,697,435 ???:referenceGraphKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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55 | 4,281,887 ???:createPreNodes [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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56 | 3,660,047 ???:getNucleotideChar [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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57 | 3,483,445 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/memchr.S:memchr [/lib/i686/cmov/libc-2.11.2.so] |
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58 | 3,093,659 ???:appendDescriptors_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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59 | 3,014,816 ???:__moddi3 [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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60 | 2,783,529 ???:getLength [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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61 | 2,741,875 ???:expandNode [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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62 | 2,683,447 ???:exportPreGraph_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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63 | 2,574,090 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/printf-parse.h:vfprintf |
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64 | 2,532,002 ???:exportLongNodeSequence [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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65 | 2,142,560 ???:getKmerOccurenceNodeID [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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66 | 2,091,809 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iogetline.c:_IO_getline_info [/lib/i686/cmov/libc-2.11.2.so] |
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67 | 2,079,635 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iofgets.c:fgets [/lib/i686/cmov/libc-2.11.2.so] |
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68 | 1,989,520 ???:incrementVirtualCoverage [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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69 | 1,989,520 ???:incrementOriginalVirtualCoverage [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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70 | 1,734,000 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/strncpy.c:strncpy [/lib/i686/cmov/libc-2.11.2.so] |
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71 | 1,662,050 ???:recordKmerOccurence [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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72 | 1,561,590 ???:getNodeStatus [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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73 | 1,384,006 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/strtol_l.c:____strtol_l_internal [/lib/i686/cmov/libc-2.11.2.so] |
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74 | 1,377,360 ???:getKmerOccurencePosition [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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75 | 1,157,676 ???:getAnnotationLength [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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76 | 1,116,176 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:_int_malloc [/lib/i686/cmov/libc-2.11.2.so] |
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77 | 1,111,243 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/./strtol_l.c:____strtoll_l_internal [/lib/i686/cmov/libc-2.11.2.so] |
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78 | 1,095,011 ???:newPreGraph_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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79 | 1,083,373 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/printf_fp.c:__printf_fp [/lib/i686/cmov/libc-2.11.2.so] |
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80 | 1,072,848 ???:popNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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81 | 1,070,127 ???:getNodeLength [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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82 | 997,647 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/genops.c:_IO_sputbackc [/lib/i686/cmov/libc-2.11.2.so] |
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83 | 987,620 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/ctype/../include/ctype.h:__ctype_b_loc [/lib/i686/cmov/libc-2.11.2.so] |
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84 | 766,425 ???:copyKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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85 | 703,912 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iogetline.c:_IO_getline [/lib/i686/cmov/libc-2.11.2.so] |
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86 | 647,412 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/_itoa.c:_itoa_word [/lib/i686/cmov/libc-2.11.2.so] |
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87 | 566,611 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:_int_free [/lib/i686/cmov/libc-2.11.2.so] |
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88 | 538,280 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/rawmemchr.S:rawmemchr [/lib/i686/cmov/libc-2.11.2.so] |
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89 | 519,352 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/_itoa.c:_itoa [/lib/i686/cmov/libc-2.11.2.so] |
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90 | 517,285 ???:createPreArc_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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91 | 497,296 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/../sysdeps/i386/mul_1.S:__mpn_mul_1 [/lib/i686/cmov/libc-2.11.2.so] |
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92 | 479,925 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/libioP.h:fgets |
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93 | 473,840 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/multiarch/strlen.S:__strlen_sse2 [/lib/i686/cmov/libc-2.11.2.so] |
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94 | 468,910 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/printf_fp.c:hack_digit.12400 [/lib/i686/cmov/libc-2.11.2.so] |
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95 | 422,115 ???:importReadSet [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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96 | 414,388 ???:fh_consolidate [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg] |
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97 | 399,846 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:calloc [/lib/i686/cmov/libc-2.11.2.so] |
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98 | 360,105 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:free [/lib/i686/cmov/libc-2.11.2.so] |
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99 | 350,764 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/strops.c:_IO_str_init_static_internal [/lib/i686/cmov/libc-2.11.2.so] |
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100 | 327,658 /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/genops.c:__uflow [/lib/i686/cmov/libc-2.11.2.so] |
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101 | |
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