jazz/11-05-04: velvetg_callgrind.log

File velvetg_callgrind.log, 9.1 KB (added by jazz, 13 years ago)
Line 
1--------------------------------------------------------------------------------
2Profile data file 'callgrind.out.12074' (creator: callgrind-3.6.0.SVN-Debian)
3--------------------------------------------------------------------------------
4I1 cache:
5D1 cache:
6L2 cache:
7Timerange: Basic block 0 - 255724005
8Trigger: Program termination
9Profiled target:  ./velvetg output/ -exp_cov 3 -min_contig_lgth 100 (PID 12074, part 1)
10Events recorded:  Ir
11Events shown:     Ir
12Event sort order: Ir
13Thresholds:       99
14Include dirs:     
15User annotated:   
16Auto-annotation:  off
17
18--------------------------------------------------------------------------------
19           Ir
20--------------------------------------------------------------------------------
211,133,262,501  PROGRAM TOTALS
22
23--------------------------------------------------------------------------------
24         Ir  file:function
25--------------------------------------------------------------------------------
26315,606,909  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/gmon/mcount.c:__mcount_internal [/lib/i686/cmov/libc-2.11.2.so]
27154,132,672  ???:sortKmerOccurenceTable [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
28 82,051,170  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/gmon/../sysdeps/i386/i386-mcount.S:mcount [/lib/i686/cmov/libc-2.11.2.so]
29 70,073,902  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/msort.c:msort_with_tmp'2 [/lib/i686/cmov/libc-2.11.2.so]
30 65,347,261  ???:compareKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
31 64,518,474  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/vfprintf.c:vfprintf [/lib/i686/cmov/libc-2.11.2.so]
32 35,642,775  ???:importPreGraph [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
33 28,902,293  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/fileops.c:_IO_file_xsputn@@GLIBC_2.1 [/lib/i686/cmov/libc-2.11.2.so]
34 28,382,502  ???:findKmerInKmerOccurenceTable [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
35 21,318,610  ???:getNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
36 19,936,918  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/multiarch/strcspn.S:0x00016aaf [/lib/i686/cmov/libc-2.11.2.so]
37 19,162,980  ???:pushNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
38 16,785,494  ???:reversePushNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
39 14,856,700  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/getc.c:getc [/lib/i686/cmov/libc-2.11.2.so]
40 14,626,580  ???:getKmerKey [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
41 14,404,676  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/strchrnul.S:strchrnul [/lib/i686/cmov/libc-2.11.2.so]
42 10,411,954  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/vfscanf.c:_IO_vfscanf [/lib/i686/cmov/libc-2.11.2.so]
43  9,781,770  ???:compareKmerOccurences [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
44  9,503,620  ???:exportGraph [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
45  8,113,875  ???:addPreNodeToPreGraph_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
46  8,029,051  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/memcpy.S:memcpy [/lib/i686/cmov/libc-2.11.2.so]
47  6,900,031  ???:newTightStringArrayFromStringArray [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
48  6,318,945  ???:velvetFprintf [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
49  5,403,930  ???:writeNucleotideAtPosition [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
50  5,258,405  ???:readPreGraphFile [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
51  5,219,890  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/libioP.h:getc
52  4,921,640  ???:getNodeInGraph [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
53  4,829,141  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/msort.c:msort_with_tmp [/lib/i686/cmov/libc-2.11.2.so]
54  4,697,435  ???:referenceGraphKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
55  4,281,887  ???:createPreNodes [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
56  3,660,047  ???:getNucleotideChar [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
57  3,483,445  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/memchr.S:memchr [/lib/i686/cmov/libc-2.11.2.so]
58  3,093,659  ???:appendDescriptors_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
59  3,014,816  ???:__moddi3 [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
60  2,783,529  ???:getLength [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
61  2,741,875  ???:expandNode [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
62  2,683,447  ???:exportPreGraph_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
63  2,574,090  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/printf-parse.h:vfprintf
64  2,532,002  ???:exportLongNodeSequence [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
65  2,142,560  ???:getKmerOccurenceNodeID [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
66  2,091,809  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iogetline.c:_IO_getline_info [/lib/i686/cmov/libc-2.11.2.so]
67  2,079,635  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iofgets.c:fgets [/lib/i686/cmov/libc-2.11.2.so]
68  1,989,520  ???:incrementVirtualCoverage [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
69  1,989,520  ???:incrementOriginalVirtualCoverage [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
70  1,734,000  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/strncpy.c:strncpy [/lib/i686/cmov/libc-2.11.2.so]
71  1,662,050  ???:recordKmerOccurence [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
72  1,561,590  ???:getNodeStatus [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
73  1,384,006  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/strtol_l.c:____strtol_l_internal [/lib/i686/cmov/libc-2.11.2.so]
74  1,377,360  ???:getKmerOccurencePosition [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
75  1,157,676  ???:getAnnotationLength [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
76  1,116,176  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:_int_malloc [/lib/i686/cmov/libc-2.11.2.so]
77  1,111,243  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/./strtol_l.c:____strtoll_l_internal [/lib/i686/cmov/libc-2.11.2.so]
78  1,095,011  ???:newPreGraph_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
79  1,083,373  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/printf_fp.c:__printf_fp [/lib/i686/cmov/libc-2.11.2.so]
80  1,072,848  ???:popNucleotide [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
81  1,070,127  ???:getNodeLength [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
82    997,647  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/genops.c:_IO_sputbackc [/lib/i686/cmov/libc-2.11.2.so]
83    987,620  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/ctype/../include/ctype.h:__ctype_b_loc [/lib/i686/cmov/libc-2.11.2.so]
84    766,425  ???:copyKmers [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
85    703,912  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/iogetline.c:_IO_getline [/lib/i686/cmov/libc-2.11.2.so]
86    647,412  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/_itoa.c:_itoa_word [/lib/i686/cmov/libc-2.11.2.so]
87    566,611  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:_int_free [/lib/i686/cmov/libc-2.11.2.so]
88    538,280  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/rawmemchr.S:rawmemchr [/lib/i686/cmov/libc-2.11.2.so]
89    519,352  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/_itoa.c:_itoa [/lib/i686/cmov/libc-2.11.2.so]
90    517,285  ???:createPreArc_pg [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
91    497,296  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdlib/../sysdeps/i386/mul_1.S:__mpn_mul_1 [/lib/i686/cmov/libc-2.11.2.so]
92    479,925  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/libioP.h:fgets
93    473,840  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/string/../sysdeps/i386/i686/multiarch/strlen.S:__strlen_sse2 [/lib/i686/cmov/libc-2.11.2.so]
94    468,910  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/stdio-common/printf_fp.c:hack_digit.12400 [/lib/i686/cmov/libc-2.11.2.so]
95    422,115  ???:importReadSet [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
96    414,388  ???:fh_consolidate [/home/jazz/11-05-04_velvet_test/velvet_1.1.03/velvetg]
97    399,846  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:calloc [/lib/i686/cmov/libc-2.11.2.so]
98    360,105  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/malloc/malloc.c:free [/lib/i686/cmov/libc-2.11.2.so]
99    350,764  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/strops.c:_IO_str_init_static_internal [/lib/i686/cmov/libc-2.11.2.so]
100    327,658  /build/buildd-eglibc_2.11.2-10-i386-GapcyD/eglibc-2.11.2/libio/genops.c:__uflow [/lib/i686/cmov/libc-2.11.2.so]
101