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jazz/11-05-04: massif.out.10571

File massif.out.10571, 13.0 KB (added by jazz, 13 years ago)

Line
1	desc: (none)
2	cmd: ./velveth output 17 -fasta -short data/test_long.fa
3	time_unit: i
4	#-----------
5	snapshot=0
6	#-----------
7	time=0
8	mem_heap_B=0
9	mem_heap_extra_B=0
10	mem_stacks_B=0
11	heap_tree=empty
12	#-----------
13	snapshot=1
14	#-----------
15	time=201656
16	mem_heap_B=34099
17	mem_heap_extra_B=125
18	mem_stacks_B=0
19	heap_tree=empty
20	#-----------
21	snapshot=2
22	#-----------
23	time=14964257
24	mem_heap_B=33747
25	mem_heap_extra_B=117
26	mem_stacks_B=0
27	heap_tree=detailed
28	n3: 33747 (heap allocation functions) malloc/new/new[], --alloc-fns, etc.
29	n1: 32792 0x40E2F27: __alloc_dir (opendir.c:186)
30	n1: 32792 0x40E3048: opendir (opendir.c:141)
31	n0: 32792 0x804A33A: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
32	n0: 603 in 5 places, all below massif's threshold (01.00%)
33	n1: 352 0x40AC00D: __fopen_internal (iofopen.c:76)
34	n2: 352 0x40AC0DA: fopen@@GLIBC_2.1 (iofopen.c:107)
35	n1: 352 0x8052839: parseDataAndReadFiles (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
36	n0: 352 0x804A68A: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
37	n0: 0 in 3 places, all below massif's threshold (01.00%)
38	#-----------
39	snapshot=3
40	#-----------
41	time=14972543
42	mem_heap_B=67142659
43	mem_heap_extra_B=133
44	mem_stacks_B=0
45	heap_tree=empty
46	#-----------
47	snapshot=4
48	#-----------
49	time=17159083
50	mem_heap_B=67142659
51	mem_heap_extra_B=133
52	mem_stacks_B=0
53	heap_tree=detailed
54	n2: 67142659 (heap allocation functions) malloc/new/new[], --alloc-fns, etc.
55	n2: 67108904 0x8053302: callocOrExit3 (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
56	n1: 67108864 0x804BD0D: newSplayTable (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
57	n0: 67108864 0x804A56F: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
58	n0: 40 in 2 places, all below massif's threshold (01.00%)
59	n0: 33755 in 6 places, all below massif's threshold (01.00%)
60	#-----------
61	snapshot=5
62	#-----------
63	time=17530320
64	mem_heap_B=67166982
65	mem_heap_extra_B=1730
66	mem_stacks_B=0
67	heap_tree=empty
68	#-----------
69	snapshot=6
70	#-----------
71	time=17787233
72	mem_heap_B=67177069
73	mem_heap_extra_B=2731
74	mem_stacks_B=0
75	heap_tree=empty
76	#-----------
77	snapshot=7
78	#-----------
79	time=18197341
80	mem_heap_B=67193182
81	mem_heap_extra_B=4330
82	mem_stacks_B=0
83	heap_tree=empty
84	#-----------
85	snapshot=8
86	#-----------
87	time=18557236
88	mem_heap_B=67207330
89	mem_heap_extra_B=5734
90	mem_stacks_B=0
91	heap_tree=empty
92	#-----------
93	snapshot=9
94	#-----------
95	time=19017548
96	mem_heap_B=67225408
97	mem_heap_extra_B=7528
98	mem_stacks_B=0
99	heap_tree=empty
100	#-----------
101	snapshot=10
102	#-----------
103	time=19337637
104	mem_heap_B=67237984
105	mem_heap_extra_B=8776
106	mem_stacks_B=0
107	heap_tree=empty
108	#-----------
109	snapshot=11
110	#-----------
111	time=19737808
112	mem_heap_B=67253704
113	mem_heap_extra_B=10336
114	mem_stacks_B=0
115	heap_tree=empty
116	#-----------
117	snapshot=12
118	#-----------
119	time=20137682
120	mem_heap_B=67269424
121	mem_heap_extra_B=11896
122	mem_stacks_B=0
123	heap_tree=empty
124	#-----------
125	snapshot=13
126	#-----------
127	time=20437803
128	mem_heap_B=67281214
129	mem_heap_extra_B=13066
130	mem_stacks_B=0
131	heap_tree=empty
132	#-----------
133	snapshot=14
134	#-----------
135	time=20761645
136	mem_heap_B=67293949
137	mem_heap_extra_B=14155
138	mem_stacks_B=0
139	heap_tree=empty
140	#-----------
141	snapshot=15
142	#-----------
143	time=21227550
144	mem_heap_B=67312303
145	mem_heap_extra_B=15673
146	mem_stacks_B=0
147	heap_tree=empty
148	#-----------
149	snapshot=16
150	#-----------
151	time=21592495
152	mem_heap_B=67326667
153	mem_heap_extra_B=16861
154	mem_stacks_B=0
155	heap_tree=empty
156	#-----------
157	snapshot=17
158	#-----------
159	time=21835594
160	mem_heap_B=67336243
161	mem_heap_extra_B=17653
162	mem_stacks_B=0
163	heap_tree=empty
164	#-----------
165	snapshot=18
166	#-----------
167	time=22200544
168	mem_heap_B=67350607
169	mem_heap_extra_B=18841
170	mem_stacks_B=0
171	heap_tree=empty
172	#-----------
173	snapshot=19
174	#-----------
175	time=22707227
176	mem_heap_B=67370557
177	mem_heap_extra_B=20491
178	mem_stacks_B=0
179	heap_tree=empty
180	#-----------
181	snapshot=20
182	#-----------
183	time=23071884
184	mem_heap_B=67384921
185	mem_heap_extra_B=21679
186	mem_stacks_B=0
187	heap_tree=empty
188	#-----------
189	snapshot=21
190	#-----------
191	time=23538192
192	mem_heap_B=67403275
193	mem_heap_extra_B=23197
194	mem_stacks_B=0
195	heap_tree=empty
196	#-----------
197	snapshot=22
198	#-----------
199	time=23870893
200	mem_heap_B=67416090
201	mem_heap_extra_B=24278
202	mem_stacks_B=0
203	heap_tree=empty
204	#-----------
205	snapshot=23
206	#-----------
207	time=28041902
208	mem_heap_B=67416090
209	mem_heap_extra_B=24278
210	mem_stacks_B=0
211	heap_tree=empty
212	#-----------
213	snapshot=24
214	#-----------
215	time=28241889
216	mem_heap_B=67481549
217	mem_heap_extra_B=24235
218	mem_stacks_B=0
219	heap_tree=empty
220	#-----------
221	snapshot=25
222	#-----------
223	time=28761639
224	mem_heap_B=67462081
225	mem_heap_extra_B=22111
226	mem_stacks_B=0
227	heap_tree=empty
228	#-----------
229	snapshot=26
230	#-----------
231	time=29094279
232	mem_heap_B=67449505
233	mem_heap_extra_B=20863
234	mem_stacks_B=0
235	heap_tree=empty
236	#-----------
237	snapshot=27
238	#-----------
239	time=29281389
240	mem_heap_B=67442431
241	mem_heap_extra_B=20161
242	mem_stacks_B=0
243	heap_tree=empty
244	#-----------
245	snapshot=28
246	#-----------
247	time=29614029
248	mem_heap_B=67429855
249	mem_heap_extra_B=18913
250	mem_stacks_B=0
251	heap_tree=empty
252	#-----------
253	snapshot=29
254	#-----------
255	time=29801139
256	mem_heap_B=67422781
257	mem_heap_extra_B=18211
258	mem_stacks_B=0
259	heap_tree=empty
260	#-----------
261	snapshot=30
262	#-----------
263	time=30133779
264	mem_heap_B=67410205
265	mem_heap_extra_B=16963
266	mem_stacks_B=0
267	heap_tree=empty
268	#-----------
269	snapshot=31
270	#-----------
271	time=30320889
272	mem_heap_B=67403131
273	mem_heap_extra_B=16261
274	mem_stacks_B=0
275	heap_tree=empty
276	#-----------
277	snapshot=32
278	#-----------
279	time=30653529
280	mem_heap_B=67390555
281	mem_heap_extra_B=15013
282	mem_stacks_B=0
283	heap_tree=empty
284	#-----------
285	snapshot=33
286	#-----------
287	time=30840639
288	mem_heap_B=67383481
289	mem_heap_extra_B=14311
290	mem_stacks_B=0
291	heap_tree=empty
292	#-----------
293	snapshot=34
294	#-----------
295	time=31173279
296	mem_heap_B=67370905
297	mem_heap_extra_B=13063
298	mem_stacks_B=0
299	heap_tree=empty
300	#-----------
301	snapshot=35
302	#-----------
303	time=31360389
304	mem_heap_B=67363831
305	mem_heap_extra_B=12361
306	mem_stacks_B=0
307	heap_tree=empty
308	#-----------
309	snapshot=36
310	#-----------
311	time=31693029
312	mem_heap_B=67351244
313	mem_heap_extra_B=11124
314	mem_stacks_B=0
315	heap_tree=empty
316	#-----------
317	snapshot=37
318	#-----------
319	time=31880139
320	mem_heap_B=67344062
321	mem_heap_extra_B=10530
322	mem_stacks_B=0
323	heap_tree=empty
324	#-----------
325	snapshot=38
326	#-----------
327	time=32212779
328	mem_heap_B=67331294
329	mem_heap_extra_B=9474
330	mem_stacks_B=0
331	heap_tree=empty
332	#-----------
333	snapshot=39
334	#-----------
335	time=32399889
336	mem_heap_B=67324112
337	mem_heap_extra_B=8880
338	mem_stacks_B=0
339	heap_tree=empty
340	#-----------
341	snapshot=40
342	#-----------
343	time=32732529
344	mem_heap_B=67311344
345	mem_heap_extra_B=7824
346	mem_stacks_B=0
347	heap_tree=empty
348	#-----------
349	snapshot=41
350	#-----------
351	time=32919639
352	mem_heap_B=67304162
353	mem_heap_extra_B=7230
354	mem_stacks_B=0
355	heap_tree=empty
356	#-----------
357	snapshot=42
358	#-----------
359	time=33252279
360	mem_heap_B=67291394
361	mem_heap_extra_B=6174
362	mem_stacks_B=0
363	heap_tree=empty
364	#-----------
365	snapshot=43
366	#-----------
367	time=33439389
368	mem_heap_B=67284212
369	mem_heap_extra_B=5580
370	mem_stacks_B=0
371	heap_tree=empty
372	#-----------
373	snapshot=44
374	#-----------
375	time=33772029
376	mem_heap_B=67271444
377	mem_heap_extra_B=4524
378	mem_stacks_B=0
379	heap_tree=empty
380	#-----------
381	snapshot=45
382	#-----------
383	time=33959139
384	mem_heap_B=67264262
385	mem_heap_extra_B=3930
386	mem_stacks_B=0
387	heap_tree=empty
388	#-----------
389	snapshot=46
390	#-----------
391	time=34291779
392	mem_heap_B=67251494
393	mem_heap_extra_B=2874
394	mem_stacks_B=0
395	heap_tree=empty
396	#-----------
397	snapshot=47
398	#-----------
399	time=34478889
400	mem_heap_B=67244312
401	mem_heap_extra_B=2280
402	mem_stacks_B=0
403	heap_tree=empty
404	#-----------
405	snapshot=48
406	#-----------
407	time=34811529
408	mem_heap_B=67231544
409	mem_heap_extra_B=1224
410	mem_stacks_B=0
411	heap_tree=empty
412	#-----------
413	snapshot=49
414	#-----------
415	time=34998639
416	mem_heap_B=67224362
417	mem_heap_extra_B=630
418	mem_stacks_B=0
419	heap_tree=empty
420	#-----------
421	snapshot=50
422	#-----------
423	time=35009034
424	mem_heap_B=67223963
425	mem_heap_extra_B=597
426	mem_stacks_B=0
427	heap_tree=empty
428	#-----------
429	snapshot=51
430	#-----------
431	time=35019429
432	mem_heap_B=67223564
433	mem_heap_extra_B=564
434	mem_stacks_B=0
435	heap_tree=empty
436	#-----------
437	snapshot=52
438	#-----------
439	time=35029824
440	mem_heap_B=67223165
441	mem_heap_extra_B=531
442	mem_stacks_B=0
443	heap_tree=empty
444	#-----------
445	snapshot=53
446	#-----------
447	time=35040219
448	mem_heap_B=67222766
449	mem_heap_extra_B=498
450	mem_stacks_B=0
451	heap_tree=empty
452	#-----------
453	snapshot=54
454	#-----------
455	time=35050614
456	mem_heap_B=67222367
457	mem_heap_extra_B=465
458	mem_stacks_B=0
459	heap_tree=empty
460	#-----------
461	snapshot=55
462	#-----------
463	time=35061009
464	mem_heap_B=67221968
465	mem_heap_extra_B=432
466	mem_stacks_B=0
467	heap_tree=empty
468	#-----------
469	snapshot=56
470	#-----------
471	time=35071404
472	mem_heap_B=67221569
473	mem_heap_extra_B=399
474	mem_stacks_B=0
475	heap_tree=empty
476	#-----------
477	snapshot=57
478	#-----------
479	time=35081799
480	mem_heap_B=67221170
481	mem_heap_extra_B=366
482	mem_stacks_B=0
483	heap_tree=detailed
484	n2: 67221170 (heap allocation functions) malloc/new/new[], --alloc-fns, etc.
485	n2: 67169154 0x8053302: callocOrExit3 (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
486	n1: 67108864 0x804BD0D: newSplayTable (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
487	n0: 67108864 0x804A56F: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
488	n0: 60290 in 6 places, all below massif's threshold (01.00%)
489	n0: 52016 in 6 places, all below massif's threshold (01.00%)
490	#-----------
491	snapshot=58
492	#-----------
493	time=35092194
494	mem_heap_B=67220771
495	mem_heap_extra_B=333
496	mem_stacks_B=0
497	heap_tree=empty
498	#-----------
499	snapshot=59
500	#-----------
501	time=35102589
502	mem_heap_B=67220372
503	mem_heap_extra_B=300
504	mem_stacks_B=0
505	heap_tree=empty
506	#-----------
507	snapshot=60
508	#-----------
509	time=35112984
510	mem_heap_B=67219973
511	mem_heap_extra_B=267
512	mem_stacks_B=0
513	heap_tree=empty
514	#-----------
515	snapshot=61
516	#-----------
517	time=35123379
518	mem_heap_B=67219574
519	mem_heap_extra_B=234
520	mem_stacks_B=0
521	heap_tree=empty
522	#-----------
523	snapshot=62
524	#-----------
525	time=35133774
526	mem_heap_B=67219175
527	mem_heap_extra_B=201
528	mem_stacks_B=0
529	heap_tree=empty
530	#-----------
531	snapshot=63
532	#-----------
533	time=35151119
534	mem_heap_B=67211965
535	mem_heap_extra_B=211
536	mem_stacks_B=0
537	heap_tree=empty
538	#-----------
539	snapshot=64
540	#-----------
541	time=45076553
542	mem_heap_B=68260517
543	mem_heap_extra_B=235
544	mem_stacks_B=0
545	heap_tree=empty
546	#-----------
547	snapshot=65
548	#-----------
549	time=59040855
550	mem_heap_B=68784793
551	mem_heap_extra_B=247
552	mem_stacks_B=0
553	heap_tree=empty
554	#-----------
555	snapshot=66
556	#-----------
557	time=76547560
558	mem_heap_B=69309069
559	mem_heap_extra_B=259
560	mem_stacks_B=0
561	heap_tree=empty
562	#-----------
563	snapshot=67
564	#-----------
565	time=108199950
566	mem_heap_B=69833345
567	mem_heap_extra_B=271
568	mem_stacks_B=0
569	heap_tree=detailed
570	n3: 69833345 (heap allocation functions) malloc/new/new[], --alloc-fns, etc.
571	n2: 67161154 0x8053302: callocOrExit3 (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
572	n1: 67108864 0x804BD0D: newSplayTable (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
573	n0: 67108864 0x804A56F: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
574	n0: 52290 in 6 places, all below massif's threshold (01.00%)
575	n1: 2621380 0x804A88D: allocatePointer (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
576	n2: 2621380 0x804AF21: findOrInsertOccurenceInSplayTree (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
577	n1: 1572828 0x804C572: printAnnotations (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
578	n1: 1572828 0x804CE67: inputSequenceArrayIntoSplayTableAndArchive (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
579	n0: 1572828 0x804A5ED: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
580	n1: 1048552 0x804C66B: printAnnotations (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
581	n1: 1048552 0x804CE67: inputSequenceArrayIntoSplayTableAndArchive (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
582	n0: 1048552 0x804A5ED: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
583	n0: 50811 in 8 places, all below massif's threshold (01.00%)
584	#-----------
585	snapshot=68
586	#-----------
587	time=126669294
588	mem_heap_B=69833345
589	mem_heap_extra_B=271
590	mem_stacks_B=0
591	heap_tree=peak
592	n3: 69833345 (heap allocation functions) malloc/new/new[], --alloc-fns, etc.
593	n2: 67161154 0x8053302: callocOrExit3 (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
594	n1: 67108864 0x804BD0D: newSplayTable (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
595	n0: 67108864 0x804A56F: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
596	n0: 52290 in 6 places, all below massif's threshold (01.00%)
597	n1: 2621380 0x804A88D: allocatePointer (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
598	n2: 2621380 0x804AF21: findOrInsertOccurenceInSplayTree (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
599	n1: 1572828 0x804C572: printAnnotations (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
600	n1: 1572828 0x804CE67: inputSequenceArrayIntoSplayTableAndArchive (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
601	n0: 1572828 0x804A5ED: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
602	n1: 1048552 0x804C66B: printAnnotations (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
603	n1: 1048552 0x804CE67: inputSequenceArrayIntoSplayTableAndArchive (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
604	n0: 1048552 0x804A5ED: main (in /home/jazz/11-05-04_velvet_test/velvet_1.1.03/velveth)
605	n0: 50811 in 8 places, all below massif's threshold (01.00%)
606	#-----------
607	snapshot=69
608	#-----------
609	time=126680439
610	mem_heap_B=68885
611	mem_heap_extra_B=139
612	mem_stacks_B=0
613	heap_tree=empty
614	#-----------
615	snapshot=70
616	#-----------
617	time=126688877
618	mem_heap_B=68553
619	mem_heap_extra_B=87
620	mem_stacks_B=0
621	heap_tree=empty

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