{{{
#!html
<div style="text-align: center;"><big style="font-weight: bold;"><big><big>雲端運算技術與生物資訊應用</big></big></big><br>Cloud Computing Technologies and its Bioinformatics Applications<big></big></div>
}}}
[[PageOutline]]

= 課程資訊 Course Info. = 

 * 上課時間： 2011/05/09 (一) ～ 2011/06/06 (一)  15:30 ～ 17:20
 * Date and Time: 15:30 to 17:20, from 9 May 2011 to 6 June 2011, every Monday
 * 上課地點： 陽明大學 圖資大樓 電腦教室 R401
 * Location: R401 PC Room, Library and Information Building, Natioanl Yang-Ming University
 * 系所公告：http://bmi.ym.edu.tw/wp/?p=4532

= 課程大綱 Course Outline =

|| 時段[[BR]]Date || 分類[[BR]]Section || 課程內容 Topics || 投影片[[BR]]Slides || 實作[[BR]]Hands-On || 補充資料[[BR]]Notes ||
|| 05/09 || Introduction ||  - 高速運算於生物資訊之應用 [[BR]] - HPC for Bioinformatics [[BR]] - PC Cluster 101 [[BR]] - 平行運算程式的種類 [[BR]] - Parallel Programming Model || [raw-attachment:wiki:YMU110509:part-1.pdf part-1][[BR]][raw-attachment:wiki:YMU110509:part-2.pdf part-2] || [wiki:YMU110509/Lab1 實作一] || ||
|| 05/16 || Introduction || - Cloud Computing Architecture [[BR]] - Introduction to Hadoop [[BR]] - Hadoop Distributed File System [[BR]] - Hands-on: HDFS commands || [raw-attachment:wiki:YMU110509:part-3.pdf part-3][[BR]][raw-attachment:wiki:YMU110509:part-4.pdf part-4] || || ||
|| 05/23 || Hands-On || - MapReduce Algorithm [[BR]] - Hands-on: Running MapReduce Examples || || [raw-attachment:wiki:YMU110509:part-4.pdf part-4] || ||
|| 05/30 || Hands-On || - Hadoop 相關專案簡介[[BR]] - Introduction to Hadoop Ecosystem [[BR]] - 大型網站架構與 HBase 分散式資料庫 [[BR]] - Large Scale Website and HBase distributed datastore [[BR]] - Pig 簡介 [[BR]] - Introduction to Pig  || || || ||
|| 06/06 || Hands-On || - Bioinformatics Apps using Hadoop [[BR]] - Hands-on: CloudBurst, Crossbow, Contrail || || || ||

= OpenMP =

 * 多核心平行化程式設計 Multi-Cores Programming
 * <官網> [https://computing.llnl.gov/tutorials/openMP/ OpenMP Tutorial]
 * <官網> [https://computing.llnl.gov/tutorials/openMP/exercise.html OpenMP Exercise]
 * [http://www.nersc.gov/nusers/help/tutorials/openmp/ OpenMP Tutorial] at National Energy Research Scientific Computing Center (NERSC)
 * [http://kheresy.wordpress.com/2006/06/09/%E7%B0%A1%E6%98%93%E7%9A%84%E7%A8%8B%E5%BC%8F%E5%B9%B3%E8%A1%8C%E5%8C%96%E6%96%B9%E6%B3%95%EF%BC%8Dopenmp%EF%BC%88%E4%B8%80%EF%BC%89%E7%B0%A1%E4%BB%8B/ 簡易的程式平行化方法－OpenMP（一）簡介]
 * [http://kheresy.wordpress.com/2006/09/13/%E7%B0%A1%E6%98%93%E7%9A%84%E7%A8%8B%E5%BC%8F%E5%B9%B3%E8%A1%8C%E5%8C%96%EF%BC%8Dopenmp%EF%BC%88%E4%BA%8C%EF%BC%89%E8%AA%9E%E6%B3%95%E8%AA%AA%E6%98%8E/ 簡易的程式平行化－OpenMP（二）語法說明]
 * [http://kheresy.wordpress.com/2006/09/15/%E7%B0%A1%E6%98%93%E7%9A%84%E7%A8%8B%E5%BC%8F%E5%B9%B3%E8%A1%8C%E5%8C%96%EF%BC%8Dopenmp%EF%BC%88%E4%B8%89%EF%BC%89%E7%AF%84%E4%BE%8B-parallel%E3%80%81section/ 簡易的程式平行化－OpenMP（三）範例 parallel、section]
 * [http://kheresy.wordpress.com/2006/09/15/%E7%B0%A1%E6%98%93%E7%9A%84%E7%A8%8B%E5%BC%8F%E5%B9%B3%E8%A1%8C%E5%8C%96%EF%BC%8Dopenmp%EF%BC%88%E5%9B%9B%EF%BC%89%E7%AF%84%E4%BE%8B-for/ 簡易的程式平行化－OpenMP（四）範例 for]
 * [http://kheresy.wordpress.com/2006/09/22/%E7%B0%A1%E6%98%93%E7%9A%84%E7%A8%8B%E5%BC%8F%E5%B9%B3%E8%A1%8C%E5%8C%96%EF%BC%8Dopenmp%EF%BC%88%E4%BA%94%EF%BC%89-%E8%AE%8A%E6%95%B8%E7%9A%84%E5%B9%B3%E8%A1%8C%E5%8C%96/ 簡易的程式平行化－OpenMP（五） 變數的平行化]